Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373293.1

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Reverse (-)

402 .. 1013

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgtttggtccacagagtggtaaggactcgtgggttggtcttccttttgtgtatgacaaggttaggattggggattgtggttttaggctcaataggtgtgagaagtttttggacattttcgcaagggaagggtgtagaatggtggaaatgtcgtgtgccgagcacgatagggatgctgcagggtcacaatttgtcacacacacaatggggagagtgttggagaaattcagattggagtcctcgccgattaatactaaagggtatgagactttgttgaacttggtggagaatacggctggggatagctttgagttgtactatgggttgtttatgtataacaagaatgcaatggagcagctggagaggctggacatggcattcgaggatcttaagaaagagttgtttgggaatttgcatgaggtttgtaggagacagttgtttgggagtgctgaacgggtcgaagccttaagagaagaagaggatgcagaaccgcaggagttgctttcgactggtagtcaaatcggaagcaatgaggatcctcggaatggtgctaaaaaaggttacgaaaatggtcatgcttctctgaattcagctcctgtgtatctacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

203

Amino Acids

23.07

Weight (kDa)

5.07

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	17
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	3 cut(s)	393, 530, 543
AcsI	RAATTY	3 cut(s)	224, 409, 586
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	17, 545
AflII	CTTAAG	2 cut(s)	389, 466
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	3 cut(s)	306, 358, 593
AluI	AGCT	3 cut(s)	306, 358, 593
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	260, 424
AlwI	GGATC	3 cut(s)	393, 530, 543
AlwNI	CAGNNNCTG	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	176, 355
ApoI	RAATTY	3 cut(s)	224, 409, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	535
BauI	CACGAG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	163, 367
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcoDI	GTCTC	2 cut(s)	260, 424
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	2 cut(s)	389, 466
BisI	GCNGC	2 cut(s)	177, 356
BlsI	GCNGC	2 cut(s)	178, 357
Bme18I	GGWCC	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	2 cut(s)	163, 472
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 545
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	2 cut(s)	354, 535
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	2 cut(s)	178, 487
BseLI	CCNNNNNNNGG	2 cut(s)	17, 545
BseMI	GCAATG	2 cut(s)	354, 535
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	163, 367
BseYI	CCCAGC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	17, 545
BsmAI	GTCTC	2 cut(s)	260, 424
BsmI	GAATGC	2 cut(s)	349, 377
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	385, 535
BspACI	CCGC	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	3 cut(s)	393, 530, 543
BspTI	CTTAAG	2 cut(s)	389, 466
BsrDI	GCAATG	2 cut(s)	354, 535
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	2 cut(s)	385, 535
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	471
BstAFI	CTTAAG	2 cut(s)	389, 466
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstF5I	GGATG	2 cut(s)	178, 487
BstKTI	GATC	2 cut(s)	388, 538
BstMAI	GTCTC	2 cut(s)	260, 424
BstMBI	GATC	2 cut(s)	385, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 499
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	163, 367
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	385, 535
BstYI	RGATCY	2 cut(s)	385, 535
BtsCI	GGATG	2 cut(s)	178, 487
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	373, 416, 575
CviJI	RGCY	7 cut(s)	88, 296, 306, 358, 367, 464, 593
CviKI_1	RGCY	7 cut(s)	88, 296, 306, 358, 367, 464, 593
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	2 cut(s)	387, 537
DpnII	GATC	2 cut(s)	385, 535
DraIII	CACNNNGTG	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	586
FaeI	CATG	3 cut(s)	376, 419, 578
FaiI	YATR	8 cut(s)	54, 264, 321, 332, 336, 374, 417, 576
FatI	CATG	3 cut(s)	372, 415, 574
Fnu4HI	GCNGC	2 cut(s)	177, 356
FokI	GGATG	2 cut(s)	185, 494
Fsp4HI	GCNGC	2 cut(s)	177, 356
GluI	GCNGC	2 cut(s)	177, 356
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	380
Hin1II	CATG	3 cut(s)	376, 419, 578
HinfI	GANTC	2 cut(s)	26, 236
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	4 cut(s)	230, 524, 543, 585
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	179, 347, 415, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 499
Hsp92II	CATG	3 cut(s)	376, 419, 578
Kzo9I	GATC	2 cut(s)	385, 535
LmnI	GCTCC	2 cut(s)	352, 598
LpnPI	CCDG	6 cut(s)	165, 282, 344, 353, 479, 495
Lsp1109I	GCAGC	2 cut(s)	163, 367
LweI	GCATC	2 cut(s)	163, 472
MaeIII	GTNAC	3 cut(s)	183, 193, 560
MalI	GATC	2 cut(s)	387, 537
MboI	GATC	2 cut(s)	385, 535
MboII	GAAGA	3 cut(s)	32, 485, 488
MflI	RGATCY	2 cut(s)	385, 535
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	188, 224, 409, 586
MlyI	GAGTC	2 cut(s)	20, 245
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	250, 357, 376, 412, 472, 526, 549
MseI	TTAA	3 cut(s)	249, 390, 467
MspA1I	CMGCKG	1 cut(s)	358
MspCI	CTTAAG	2 cut(s)	389, 466
Mva1269I	GAATGC	2 cut(s)	349, 377
MwoI	GCNNNNNNNGC	2 cut(s)	364, 499
NdeII	GATC	2 cut(s)	385, 535
NlaIII	CATG	3 cut(s)	376, 419, 578
NlaIV	GGNNCC	1 cut(s)	537
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	183, 193
PctI	GAATGC	2 cut(s)	349, 377
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	178, 357
PleI	GAGTC	2 cut(s)	20, 244
PpsI	GAGTC	2 cut(s)	20, 244
PshBI	ATTAAT	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	385, 535
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	249, 390, 467
SatI	GCNGC	2 cut(s)	177, 356
Sau3AI	GATC	2 cut(s)	385, 535
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	2 cut(s)	20, 245
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	63, 98, 308, 360, 423, 562, 595
SfaNI	GCATC	2 cut(s)	163, 472
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	8
SmlI	CTYRAG	2 cut(s)	389, 466
SmoI	CTYRAG	2 cut(s)	389, 466
Sse9I	AATT	4 cut(s)	188, 224, 409, 586
SsiI	CCGC	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	381, 459, 506
TasI	AATT	4 cut(s)	188, 224, 409, 586
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	249, 390, 467
Tru9I	TTAA	3 cut(s)	249, 390, 467
TseFI	GTSAC	2 cut(s)	183, 193
TseI	GCWGC	2 cut(s)	176, 355
Tsp45I	GTSAC	2 cut(s)	183, 193
Van91I	CCANNNNNTGG	1 cut(s)	17
Vha464I	CTTAAG	2 cut(s)	389, 466
VpaK11BI	GGWCC	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	3 cut(s)	224, 409, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.