Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Reverse (-)

38871979 .. 38874014

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0318300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCAGAGGTCGATTGCGAGTCTGGGTGGGTCCCTCGTCAAAAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCATCCGTACTCTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCAGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGGTTGGCTTTTGGCAACATTTTCTGTTTTACACTGGCTTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

200

Amino Acids

22.79

Weight (kDa)

9.18

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	278, 370
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	93, 258, 407
AgsI	TTSAA	1 cut(s)	556
AluBI	AGCT	3 cut(s)	63, 263, 281
AluI	AGCT	3 cut(s)	63, 263, 281
Alw21I	GWGCWC	2 cut(s)	65, 319
Alw26I	GTCTC	2 cut(s)	231, 413
AlwI	GGATC	2 cut(s)	278, 370
AlwNI	CAGNNNCTG	1 cut(s)	443
AspA2I	CCTAGG	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	65, 319
BccI	CCATC	2 cut(s)	143, 556
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	231, 413
BfaI	CTAG	2 cut(s)	225, 461
BglI	GCCNNNNNGGC	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	31, 32, 107
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	46, 266, 460
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 529, 559
Bse1I	ACTGG	2 cut(s)	380, 595
Bse3DI	GCAATG	3 cut(s)	305, 422, 522
BseDI	CCNNGG	3 cut(s)	46, 266, 460
BseGI	GGATG	1 cut(s)	86
BseMI	GCAATG	3 cut(s)	305, 422, 522
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	380, 595
BseRI	GAGGAG	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	65, 319
BsiSI	CCGG	2 cut(s)	71, 110
BslFI	GGGAC	3 cut(s)	16, 457, 519
BsmAI	GTCTC	2 cut(s)	231, 413
BsmFI	GGGAC	3 cut(s)	16, 457, 519
Bsp1286I	GDGCHC	2 cut(s)	65, 319
Bsp143I	GATC	3 cut(s)	270, 362, 466
BspACI	CCGC	1 cut(s)	427
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	31, 32, 107
BspPI	GGATC	2 cut(s)	278, 370
BsrDI	GCAATG	3 cut(s)	305, 422, 522
BsrI	ACTGG	2 cut(s)	380, 595
BssECI	CCNNGG	3 cut(s)	46, 266, 460
BssMI	GATC	3 cut(s)	270, 362, 466
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	3 cut(s)	273, 365, 469
BstMAI	GTCTC	2 cut(s)	231, 413
BstMBI	GATC	3 cut(s)	270, 362, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 443
BstSCI	CCNGG	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	273, 588
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	92, 257, 406
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	45, 63, 106, 263, 281, 379, 564, 594
CviKI_1	RGCY	8 cut(s)	45, 63, 106, 263, 281, 379, 564, 594
CviQI	GTAC	3 cut(s)	92, 257, 406
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	272, 364, 468
DpnII	GATC	3 cut(s)	270, 362, 466
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	362
FaiI	YATR	7 cut(s)	144, 255, 348, 360, 481, 503, 510
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	3 cut(s)	16, 457, 519
FatI	CATG	1 cut(s)	358
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	225, 461
HapII	CCGG	2 cut(s)	71, 110
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	5 cut(s)	19, 410, 440, 521, 542
HpaII	CCGG	2 cut(s)	71, 110
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	4 cut(s)	100, 152, 197, 395
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	3 cut(s)	70, 86, 189
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	4, 146, 310, 437, 446, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 443
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	362
KflI	GGGWCCC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	270, 362, 466
LmnI	GCTCC	3 cut(s)	111, 268, 502
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	2 cut(s)	225, 461
MaeIII	GTNAC	2 cut(s)	350, 535
MalI	GATC	3 cut(s)	272, 364, 468
MboI	GATC	3 cut(s)	270, 362, 466
MboII	GAAGA	3 cut(s)	88, 329, 339
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	65, 319
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	4 cut(s)	28, 419, 530, 536
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	4 cut(s)	41, 44, 96, 409
Mph1103I	ATGCAT	1 cut(s)	148
MspI	CCGG	2 cut(s)	71, 110
MspR9I	CCNGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	385, 443
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	3 cut(s)	270, 362, 466
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	3 cut(s)	31, 32, 107
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	535
NsiI	ATGCAT	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 135
PfeI	GAWTC	1 cut(s)	440
PleI	GAGTC	4 cut(s)	27, 418, 529, 536
PpsI	GAGTC	4 cut(s)	27, 418, 529, 536
PpuMI	RGGWCCY	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	31, 32, 107
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	3 cut(s)	93, 258, 407
RsaNI	GTAC	3 cut(s)	92, 257, 406
SacI	GAGCTC	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	270, 362, 466
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	28, 419, 530, 536
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	65, 319
SetI	ASST	6 cut(s)	11, 65, 265, 283, 466, 561
SfaNI	GCATC	1 cut(s)	95
SinI	GGWCC	1 cut(s)	30
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	2 cut(s)	225, 461
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	11, 99, 129, 184
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	440
TscAI	CASTG	2 cut(s)	280, 595
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	2 cut(s)	79, 283
TspRI	CASTG	2 cut(s)	280, 595
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	460
XspI	CTAG	2 cut(s)	225, 461
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.