AT1G15970

Methyladenine glycosylase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012176
Physical Location & Seq
Reverse (-)
5486273 .. 5489132
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15970.1

Sequence Viewer

Length: 1059 bp
ATGTCGGTTCCTCCTAGATTCCGGTCCGTAAATTCCGATGAGCGAGAGTTCCGATCAGTTCTTGGTCCTACCGGGAACAAGCTGCAGAGGAAACCACCGGGGATGAAACTGGAGAAGCCGATGATGGAGAAGACCATCATCGACTCAAAAGATGAGAAAGCGAAGAAACCAACTACTCCGGCTTCACCAAGGACGACTCTGAAGCAATGCTCGTCTCTTTGCTCTTCGATTTTGAGAAAGAATAGTGCTTCAATGACTGCTTCGTATTCCTCTGATGCTTCGTCTTCGTGTGAGTCATCGCCTTTGAGCGTGGCGTCTTCTTCGAGCTGTAAGAAGGTTGTGAGGCGAAGTGGGTCTGTCTCTTCTACAAGGAAGCTGAGTGTTGGGAAAGAAGAAGAGAAGGTTTCTGGTGATTGCTTCGCTGATGGTCGTAAAAGGTGTGCTTGGATCACACCTAAAGCTGACCCGTGCTATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAAGAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTCTCATGGACCGACATTCTCTCCAGAAGACATATACTCAGGGAAGTTTTTATGGACTTCGATCCAGTCGCTGTAGCTGAATTGAATGACAAAAAGTTAACAGCGCCAGGTACTGCTGCCATTTCCTTACTATCAGAGGTCAAGATACGATCAATCCTCGATAACTCACGCCATGTGCGCAAGATTATAGCTGAATGTGGATCATTGAAGAAGTACATGTGGAACTTTGTGAACAACAAGCCTACACAGAGCCAATTCAGGTATCAGCGCCAAGTCCCTGTGAAGACATCGAAAGCTGAGTTTATAAGCAAAGATCTTGTACGCAGAGGCTTTCGCAGCGTTAGTCCAACAGTTATTTACTCCTTCATGCAAGCAGCTGGACTCACGAATGATCATCTCATAGGCTGCTTCAGATACCAAGACTGTTGCGTAGATGCAGAGACAACAACAACAACGAAGGCGAAGAAGAAGAACGAGAGAGAGAGTGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

352

Amino Acids

39.3

Weight (kDa)

9.45

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 153 - 326 5.2e-63 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15970 AT1G15970 AT1G75090 AT1G80850
fragaria_vesca FvH4_2g40160
malus_domestica MD08G1035300.v1.1
prunus_persica Prupe.1G382800_v2.0.a1
pyrus_communis pycom08g02790
rosa_chinensis RchiOBHm_Chr6g0300571
rosa_laevigata RLG00000011323
rosa_multiflora Rmu_sc0021182.1_g000001 Rmu_sc0026329.1_g000001
rosa_roxburghii Rroxscaffold_7G00167660
rosa_rugosa Rorug06G0297300
rosa_samantha Rh6AG409800 Rh6BG416900 Rh6CG424800 Rh6DG410300
rosa_wichuraiana Rw6G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 869
Acc16I TGCGCA 1 cut(s) 743
AclWI GGATC 3 cut(s) 455, 620, 772
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 2 cut(s) 221, 958
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 4 cut(s) 510, 676, 779, 885
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 3 cut(s) 252, 649, 772
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 9 cut(s) 82, 327, 376, 461, 526, 641, 755, 860, 941
AluI AGCT 9 cut(s) 82, 327, 376, 461, 526, 641, 755, 860, 941
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 3 cut(s) 219, 364, 998
AlwI GGATC 3 cut(s) 455, 620, 772
AlwNI CAGNNNCTG 2 cut(s) 635, 677
ApeKI GCWGC 5 cut(s) 82, 680, 900, 938, 969
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 3 cut(s) 670, 744, 834
AspS9I GGNCC 3 cut(s) 24, 65, 573
AsuC2I CCSGG 2 cut(s) 73, 99
AsuHPI GGTGA 2 cut(s) 177, 422
AvaII GGWCC 3 cut(s) 24, 65, 573
BbsI GAAGAC 5 cut(s) 137, 276, 309, 598, 854
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 5 cut(s) 69, 667, 912, 950, 956
BccI CCATC 3 cut(s) 118, 143, 419
BciT130I CCWGG 1 cut(s) 672
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 2 cut(s) 73, 99
BcoDI GTCTC 3 cut(s) 219, 364, 998
BfaI CTAG 2 cut(s) 15, 557
BfmI CTRYAG 2 cut(s) 83, 636
BfoI RGCGCY 2 cut(s) 671, 835
BglII AGATCT 1 cut(s) 877
BisI GCNGC 5 cut(s) 83, 681, 901, 939, 970
BlsI GCNGC 5 cut(s) 84, 682, 902, 940, 971
Bme1390I CCNGG 3 cut(s) 73, 99, 672
Bme18I GGWCC 3 cut(s) 24, 65, 573
BmgT120I GGNCC 3 cut(s) 24, 65, 573
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 3 cut(s) 73, 99, 672
BmsI GCATC 2 cut(s) 265, 988
BpiI GAAGAC 5 cut(s) 137, 276, 309, 598, 854
BpmI CTGGAG 2 cut(s) 131, 571
BpuMI CCSGG 2 cut(s) 73, 99
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 98, 188
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 569, 599
Bse1I ACTGG 2 cut(s) 114, 629
Bse3DI GCAATG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 2 cut(s) 98, 188
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 3 cut(s) 368, 616, 852
BseNI ACTGG 2 cut(s) 114, 629
BseXI GCAGC 5 cut(s) 69, 667, 912, 950, 956
BsiHKAI GWGCWC 1 cut(s) 556
BsiSI CCGG 4 cut(s) 22, 72, 98, 179
BslFI GGGAC 1 cut(s) 824
BsmAI GTCTC 3 cut(s) 219, 364, 998
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 824
Bsp1286I GDGCHC 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
BspCNI CTCAG 3 cut(s) 369, 615, 853
BspLI GGNNCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 3 cut(s) 455, 620, 772
BspQI GCTCTTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 114, 629
BssECI CCNNGG 2 cut(s) 98, 188
BssMI GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 916, 989
Bst6I CTCTTC 3 cut(s) 229, 367, 390
BstACI GRCGYC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 936
BstDEI CTNAG 3 cut(s) 377, 602, 861
BstF5I GGATG 1 cut(s) 108
BstH2I RGCGCY 2 cut(s) 671, 835
BstHHI GCGC 3 cut(s) 670, 744, 834
BstKTI GATC 7 cut(s) 56, 450, 628, 716, 767, 880, 958
BstMAI GTCTC 3 cut(s) 219, 364, 998
BstMBI GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
BstMWI GCNNNNNNNGC 2 cut(s) 741, 900
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 3 cut(s) 71, 97, 670
BstSFI CTRYAG 2 cut(s) 83, 636
BstV1I GCAGC 5 cut(s) 69, 667, 912, 950, 956
BstV2I GAAGAC 5 cut(s) 137, 276, 309, 598, 854
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 936
CaiI CAGNNNCTG 2 cut(s) 635, 677
CfoI GCGC 3 cut(s) 670, 744, 834
Cfr13I GGNCC 3 cut(s) 24, 65, 573
CpoI CGGWCCG 1 cut(s) 24
CseI GACGC 1 cut(s) 303
Csp6I GTAC 4 cut(s) 509, 675, 778, 884
CspI CGGWCCG 1 cut(s) 24
CviAII CATG 6 cut(s) 485, 512, 570, 737, 781, 931
CviQI GTAC 4 cut(s) 509, 675, 778, 884
DdeI CTNAG 3 cut(s) 377, 602, 861
DpnI GATC 7 cut(s) 55, 449, 627, 715, 766, 879, 957
DpnII GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
Eam1104I CTCTTC 3 cut(s) 229, 367, 390
EarI CTCTTC 3 cut(s) 229, 367, 390
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 24, 65, 573
Eco57I CTGAAG 2 cut(s) 221, 958
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 6 cut(s) 488, 515, 573, 740, 784, 934
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FaqI GGGAC 1 cut(s) 824
FatI CATG 6 cut(s) 484, 511, 569, 736, 780, 930
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 5 cut(s) 83, 681, 901, 939, 970
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 5 cut(s) 83, 681, 901, 939, 970
FspBI CTAG 2 cut(s) 15, 557
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 3 cut(s) 669, 743, 833
GluI GCNGC 5 cut(s) 83, 681, 901, 939, 970
GsuI CTGGAG 2 cut(s) 131, 571
HaeII RGCGCY 2 cut(s) 671, 835
HapII CCGG 4 cut(s) 22, 72, 98, 179
HgaI GACGC 1 cut(s) 303
HhaI GCGC 3 cut(s) 670, 744, 834
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 6 cut(s) 488, 515, 573, 740, 784, 934
Hin6I GCGC 3 cut(s) 668, 742, 832
HinP1I GCGC 3 cut(s) 668, 742, 832
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 18, 143, 196, 293, 945
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 4 cut(s) 22, 72, 98, 179
HphI GGTGA 2 cut(s) 177, 422
Hpy166II GTNNAC 2 cut(s) 663, 796
Hpy188I TCNGA 6 cut(s) 37, 53, 201, 274, 700, 977
Hpy188III TCNNGA 3 cut(s) 588, 706, 949
Hpy8I GTNNAC 2 cut(s) 663, 796
HpyAV CCTTC 4 cut(s) 328, 394, 937, 1015
HpyCH4III ACNGT 2 cut(s) 916, 989
HpyCH4V TGCA 3 cut(s) 85, 934, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 741, 900
HpyF3I CTNAG 3 cut(s) 377, 602, 861
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 6 cut(s) 488, 515, 573, 740, 784, 934
HspAI GCGC 3 cut(s) 668, 742, 832
Ksp22I TGATCA 1 cut(s) 955
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
LguI GCTCTTC 1 cut(s) 229
Lsp1109I GCAGC 5 cut(s) 69, 667, 912, 950, 956
LweI GCATC 2 cut(s) 265, 988
MaeI CTAG 2 cut(s) 15, 557
MalI GATC 7 cut(s) 55, 449, 627, 715, 766, 879, 957
MboI GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 3 cut(s) 31, 644, 818
MlyI GAGTC 4 cut(s) 137, 190, 302, 939
MmeI TCCRAC 1 cut(s) 935
MnlI CCTC 8 cut(s) 21, 81, 280, 336, 554, 694, 731, 884
MseI TTAA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 4 cut(s) 22, 72, 98, 179
MspR9I CCNGG 3 cut(s) 73, 99, 672
MvaI CCWGG 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 741, 900
NciI CCSGG 2 cut(s) 73, 99
NdeII GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
NlaIII CATG 6 cut(s) 488, 515, 573, 740, 784, 934
NlaIV GGNNCC 1 cut(s) 9
NsbI TGCGCA 1 cut(s) 743
NspI RCATGY 1 cut(s) 784
PciI ACATGT 1 cut(s) 780
PciSI GCTCTTC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 5 cut(s) 84, 682, 902, 940, 971
PleI GAGTC 4 cut(s) 137, 190, 301, 939
PpsI GAGTC 4 cut(s) 137, 190, 301, 939
PscI ACATGT 1 cut(s) 780
PsiI TTATAA 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 3 cut(s) 24, 65, 573
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 2 cut(s) 635, 677
PsuI RGATCY 1 cut(s) 877
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 4 cut(s) 510, 676, 779, 885
RsaNI GTAC 4 cut(s) 509, 675, 778, 884
Rsr2I CGGWCCG 1 cut(s) 24
RsrII CGGWCCG 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 5 cut(s) 83, 681, 901, 939, 970
Sau3AI GATC 7 cut(s) 53, 447, 625, 713, 764, 877, 955
Sau96I GGNCC 3 cut(s) 24, 65, 573
SchI GAGTC 4 cut(s) 137, 190, 302, 939
ScrFI CCNGG 3 cut(s) 73, 99, 672
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 2 cut(s) 265, 988
SfcI CTRYAG 2 cut(s) 83, 636
SinI GGWCC 3 cut(s) 24, 65, 573
Sse9I AATT 3 cut(s) 31, 644, 818
SspMI CTAG 2 cut(s) 15, 557
StyD4I CCNGG 3 cut(s) 71, 97, 670
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 916, 989
TaqI TCGA 6 cut(s) 141, 227, 323, 624, 723, 854
TaqII GACCGA 1 cut(s) 590
TasI AATT 3 cut(s) 31, 644, 818
TatI WGTACW 2 cut(s) 508, 777
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TseI GCWGC 5 cut(s) 82, 680, 900, 938, 969
TspDTI ATGAA 2 cut(s) 119, 919
TspGWI ACGGA 1 cut(s) 16
VpaK11BI GGWCC 3 cut(s) 24, 65, 573
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 784
XspI CTAG 2 cut(s) 15, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.