AT1G80850

Methyladenine glycosylase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012176
Physical Location & Seq
Reverse (-)
30385449 .. 30387602
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80850.1

Sequence Viewer

Length: 984 bp
ATGTCGGCTCCACCGCGAGTTCGGTCTGTGGATTCATCCGACCGAGAATTCAGATCAGTTCTTGGTCCCGCCGGCAATAAGCTGCAGCAGAAACCGTTGTCAAAGCCGGTGAAGAAGCCTGTGGCTGAGAAAACCAAAAACCTAACCTTTACGGAGAAAATGCCGCAATGCTCGCCTCTAAGCCCTCCAATTCTGAGACGTAATGGTATTTCGATGACTGCTTCGTATTCTTCAGATGCGTCGTCTTCTTGCGAGTCGTCGCCGTTAAGTATGACGTCTACTTCGAGTGGAAAGAGGGTTTTGCGGCGAAGTGGGTCAGTTTCTTCTTCCTCTTCACTGAGAAGAAATCTGACGGAGGAGAGAGATGAGAAGGCTAGTGATTGCTTCTGTGACGGTCGTAAAAGATGCGCTTGGATCACCCCTAAATCTGATCAATGTTACATTGCCTTCCATGATGAAGAATGGGGAGTTCCTGTCCATGATGACAAGAGACTTTTCGAGTTATTAAGCTTGTCTGGTGCTCTTGCTGAACTATCTTGGAAAGACATTCTTTCCAAAAGACAACTATTCAGGGAGGTTTTCATGGACTTTGATCCAATTGCAATATCTGAATTAACAAATAAAAAGATAACATCCCCTGAGATTGCTGCCACCACGTTACTATCAGAGCAAAAGCTACGGTCAATCCTCGAGAATGCTAACCAAGTTTGCAAGATAATAGGTGCATTTGGATCATTTGACAAGTACATTTGGAACTTCGTTAACCAGAAACCTACTCAGAGCCAATTCCGGTACCCACGTCAAGTCCCTGTGAAGACTTCGAAAGCCGAGTTGATAAGCAAAGATCTTGTACGCAGAGGTTTTCGCAGTGTAAGTCCAACGGTTATTTACTCGTTCATGCAAACAGCTGGTCTCACAAACGACCATCTCACTTGCTGCTTCAGACACCATGACTGCATGACAAAGGACGAGACTGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

327

Amino Acids

36.74

Weight (kDa)

9.32

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 142 - 316 2e-63 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15970 AT1G15970 AT1G75090 AT1G80850
fragaria_vesca FvH4_2g40160
malus_domestica MD08G1035300.v1.1
prunus_persica Prupe.1G382800_v2.0.a1
pyrus_communis pycom08g02790
rosa_chinensis RchiOBHm_Chr6g0300571
rosa_laevigata RLG00000011323
rosa_multiflora Rmu_sc0021182.1_g000001 Rmu_sc0026329.1_g000001
rosa_roxburghii Rroxscaffold_7G00167660
rosa_rugosa Rorug06G0297300
rosa_samantha Rh6AG409800 Rh6BG416900 Rh6CG424800 Rh6DG410300
rosa_wichuraiana Rw6G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
Acc65I GGTACC 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 792
AccI GTMKAC 1 cut(s) 278
AccII CGCG 1 cut(s) 16
AciI CCGC 4 cut(s) 14, 69, 164, 304
AclWI GGATC 3 cut(s) 422, 587, 739
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 2 cut(s) 216, 925
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 3 cut(s) 746, 794, 852
AjiI CACGTC 1 cut(s) 800
AluBI AGCT 4 cut(s) 82, 510, 676, 908
AluI AGCT 4 cut(s) 82, 510, 676, 908
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 4 cut(s) 190, 484, 917, 965
AlwI GGATC 3 cut(s) 422, 587, 739
Ama87I CYCGRG 1 cut(s) 689
ApeKI GCWGC 4 cut(s) 82, 85, 647, 936
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 4 cut(s) 265, 297, 895, 927
Asp718I GGTACC 1 cut(s) 792
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 121, 409
AsuII TTCGAA 1 cut(s) 821
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 784, 817
BanI GGYRCC 1 cut(s) 792
BbsI GAAGAC 2 cut(s) 237, 821
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 4 cut(s) 69, 97, 634, 923
BccI CCATC 1 cut(s) 933
BceAI ACGGC 1 cut(s) 247
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 4 cut(s) 190, 484, 917, 965
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 844
BisI GCNGC 6 cut(s) 83, 86, 164, 305, 648, 937
BlsI GCNGC 6 cut(s) 84, 87, 165, 306, 649, 938
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 689
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 9, 67, 794
BmsI GCATC 2 cut(s) 226, 395
BpiI GAAGAC 2 cut(s) 237, 821
Bpu14I TTCGAA 1 cut(s) 821
BsaHI GRCGYC 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 917
BsaWI WCCGGW 1 cut(s) 789
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bse118I RCCGGY 2 cut(s) 71, 106
Bse1I ACTGG 1 cut(s) 979
Bse3DI GCAATG 2 cut(s) 173, 441
BseGI GGATG 2 cut(s) 35, 632
BseMI GCAATG 2 cut(s) 173, 441
BseMII CTCAG 5 cut(s) 117, 185, 329, 630, 791
BseNI ACTGG 1 cut(s) 979
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 4 cut(s) 69, 97, 634, 923
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 2 cut(s) 43, 397
BshNI GGYRCC 1 cut(s) 792
BsiEI CGRYCG 2 cut(s) 43, 397
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 3 cut(s) 72, 107, 790
BslFI GGGAC 2 cut(s) 51, 791
BsmAI GTCTC 4 cut(s) 190, 484, 917, 965
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 51, 791
BsmI GAATGC 1 cut(s) 700
Bso31I GGTCTC 1 cut(s) 917
BsoBI CYCGRG 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 6 cut(s) 53, 414, 430, 592, 731, 844
BspACI CCGC 4 cut(s) 14, 69, 164, 304
BspCNI CTCAG 5 cut(s) 118, 186, 330, 631, 790
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 9, 67, 794
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 3 cut(s) 422, 587, 739
BspT104I TTCGAA 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 792
BspTNI GGTCTC 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 173, 441
BsrFI RCCGGY 2 cut(s) 71, 106
BsrI ACTGG 1 cut(s) 979
BssAI RCCGGY 2 cut(s) 71, 106
BssMI GATC 6 cut(s) 53, 414, 430, 592, 731, 844
BssNI GRCGYC 1 cut(s) 275
Bst4CI ACNGT 4 cut(s) 96, 395, 681, 883
Bst6I CTCTTC 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 2 cut(s) 73, 173
BstDEI CTNAG 6 cut(s) 126, 179, 194, 338, 639, 777
BstF5I GGATG 2 cut(s) 35, 632
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 6 cut(s) 56, 417, 433, 595, 734, 847
BstMAI GTCTC 4 cut(s) 190, 484, 917, 965
BstMBI GATC 6 cut(s) 53, 414, 430, 592, 731, 844
BstMCI CGRYCG 2 cut(s) 43, 397
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 69, 97, 634, 923
BstV2I GAAGAC 2 cut(s) 237, 821
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 2 cut(s) 35, 632
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 2 cut(s) 335, 874
Cac8I GCNNGC 2 cut(s) 73, 173
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 2 cut(s) 71, 106
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 228
Csp6I GTAC 3 cut(s) 745, 793, 851
CviAII CATG 6 cut(s) 452, 479, 583, 898, 950, 958
CviQI GTAC 3 cut(s) 745, 793, 851
DdeI CTNAG 6 cut(s) 126, 179, 194, 338, 639, 777
DpnI GATC 6 cut(s) 55, 416, 432, 594, 733, 846
DpnII GATC 6 cut(s) 53, 414, 430, 592, 731, 844
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 917
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 216, 925
Eco88I CYCGRG 1 cut(s) 689
EcoRI GAATTC 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 6 cut(s) 455, 482, 586, 901, 953, 961
FaiI YATR 7 cut(s) 272, 453, 480, 584, 899, 951, 959
FalI AAGNNNNNCTT 4 cut(s) 394, 426, 534, 566
FaqI GGGAC 2 cut(s) 51, 791
FatI CATG 6 cut(s) 451, 478, 582, 897, 949, 957
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 6 cut(s) 83, 86, 164, 305, 648, 937
FokI GGATG 2 cut(s) 22, 619
Fsp4HI GCNGC 6 cut(s) 83, 86, 164, 305, 648, 937
FspBI CTAG 1 cut(s) 375
GlaI GCGC 1 cut(s) 409
GluI GCNGC 6 cut(s) 83, 86, 164, 305, 648, 937
HapII CCGG 3 cut(s) 72, 107, 790
HgaI GACGC 1 cut(s) 228
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 6 cut(s) 455, 482, 586, 901, 953, 961
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 2 cut(s) 32, 254
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 3 cut(s) 72, 107, 790
HphI GGTGA 2 cut(s) 121, 409
Hpy166II GTNNAC 2 cut(s) 279, 763
Hpy188III TCNNGA 1 cut(s) 691
Hpy8I GTNNAC 2 cut(s) 279, 763
Hpy99I CGWCG 2 cut(s) 244, 262
HpyAV CCTTC 2 cut(s) 364, 457
HpyCH4III ACNGT 4 cut(s) 96, 395, 681, 883
HpyCH4IV ACGT 4 cut(s) 199, 275, 656, 799
HpyCH4V TGCA 6 cut(s) 85, 602, 711, 725, 901, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 6 cut(s) 126, 179, 194, 338, 639, 777
HpySE526I ACGT 4 cut(s) 199, 275, 656, 799
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 6 cut(s) 455, 482, 586, 901, 953, 961
HspAI GCGC 1 cut(s) 408
KpnI GGTACC 1 cut(s) 796
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 6 cut(s) 53, 414, 430, 592, 731, 844
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 4 cut(s) 69, 97, 634, 923
LweI GCATC 2 cut(s) 226, 395
MaeI CTAG 1 cut(s) 375
MaeII ACGT 4 cut(s) 199, 275, 656, 799
MaeIII GTNAC 3 cut(s) 389, 437, 657
MalI GATC 6 cut(s) 55, 416, 432, 594, 733, 846
MboI GATC 6 cut(s) 53, 414, 430, 592, 731, 844
MboII GAAGA 9 cut(s) 124, 222, 237, 315, 318, 324, 354, 470, 826
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 6 cut(s) 47, 189, 597, 611, 785, 979
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 63, 902
MnlI CCTC 8 cut(s) 186, 195, 288, 340, 349, 568, 698, 851
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 5 cut(s) 266, 506, 614, 762, 982
MspA1I CMGCKG 1 cut(s) 908
MspI CCGG 3 cut(s) 72, 107, 790
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 700
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 172
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 6 cut(s) 53, 414, 430, 592, 731, 844
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 6 cut(s) 455, 482, 586, 901, 953, 961
NlaIV GGNNCC 3 cut(s) 9, 67, 794
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 389
NspV TTCGAA 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 1 cut(s) 700
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 6 cut(s) 84, 87, 165, 306, 649, 938
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 9, 67, 794
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 3 cut(s) 746, 794, 852
RsaNI GTAC 3 cut(s) 745, 793, 851
SaqAI TTAA 5 cut(s) 266, 506, 614, 762, 982
SatI GCNGC 6 cut(s) 83, 86, 164, 305, 648, 937
Sau3AI GATC 6 cut(s) 53, 414, 430, 592, 731, 844
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 2 cut(s) 226, 395
SfcI CTRYAG 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 689
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 6 cut(s) 47, 189, 597, 611, 785, 979
SsiI CCGC 4 cut(s) 14, 69, 164, 304
SspMI CTAG 1 cut(s) 375
TaaI ACNGT 4 cut(s) 96, 395, 681, 883
TaiI ACGT 4 cut(s) 202, 278, 659, 802
TaqI TCGA 5 cut(s) 212, 284, 498, 690, 821
TaqII GACCGA 2 cut(s) 12, 57
TasI AATT 6 cut(s) 47, 189, 597, 611, 785, 979
TatI WGTACW 1 cut(s) 744
TauI GCSGC 2 cut(s) 166, 307
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 5 cut(s) 266, 506, 614, 762, 982
Tru9I TTAA 5 cut(s) 266, 506, 614, 762, 982
TscAI CASTG 2 cut(s) 342, 874
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 4 cut(s) 82, 85, 647, 936
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 24, 471, 571, 886
TspGWI ACGGA 2 cut(s) 167, 368
TspRI CASTG 2 cut(s) 342, 874
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 47
XhoI CTCGAG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 375
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.