AT1G75090

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012176
Physical Location & Seq
Reverse (-)
28187447 .. 28189765
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75090.1

Sequence Viewer

Length: 990 bp
ATGTCTATAGTCTCTAAGCTTCGTTCTCCGGTTAAACCAATAGATGAGTCACGAGCTATCCTCTGTTCGACCGGGAACAGATTTAAGGTTACGAAAACAGAAATGACGAAGAAGCCACAACTGAATCCACGAGTGACGAAATCTCCGGCGACGAAGAAGCCCGATTCCAATTTCTCAGTTTCGACTGATGATTCCTCTTCTTCTTCTTCATCCTCGGAACGTTCGTCAGTGAACACGACAAACTCTGGGAAAGTAACCACTCCGTCGAAACGGAACGGAGTTGAGAAGCTCAATAATGTCGTTGCCTCCGTCGCCGTCGTTGAAGACATTAGTCCTAAAATTCCGGGACCGGTCAAGAGATGCCACTGGATCACACCTAATTCAGACCCGATCTATGTTTTGTTCCACGACGAGGAATGGGGTGTTCCAGTTCGTGATGACAAGAAACTCTTCGAGCTACTTGTCTTCTCACAAGCTTTGGCTGAGTTTAGCTGGCCTTCAATCCTACGCAGAAGAGACGACTTTAGGAAGCTCTTTGAAGAGTTTGATCCTTCAGCTATAGCACAATTCACAGAGAAGAGGTTGATGTCTCTTAGAGTTAATGGGTGTCTAATTCTATCCGAACAGAAACTGCGAGCAATTGTAGAGAACGCGAAATCTGTTCTCAAGGTCAAGCAGGAATTTGGATCGTTCAGTAATTATTGTTGGAGATTTGTGAACCACAAGCCATTAAGAAATGGCTATCGATATGGTCGTCAAGTACCGGTTAAGTCCCCAAAGGCAGAGTACATTAGCAAAGATATGATGCAGAGAGGGTTTCGCTGCGTTGGTCCTACTGTTATGTATTCCTTCTTGCAGGCCTCTGGCATTGTTAATGATCATCTCACAGCTTGTTTCAGATACCAAGAATGTAATGTTGAGACTGAGAGAGAAACAAAAAGCCATGAGACTGAAACCAAACTGGATCTGCATTCTCCATTACTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

329

Amino Acids

37.35

Weight (kDa)

9.45

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 127 - 300 6.5e-67 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15970 AT1G15970 AT1G75090 AT1G80850
fragaria_vesca FvH4_2g40160
malus_domestica MD08G1035300.v1.1
prunus_persica Prupe.1G382800_v2.0.a1
pyrus_communis pycom08g02790
rosa_chinensis RchiOBHm_Chr6g0300571
rosa_laevigata RLG00000011323
rosa_multiflora Rmu_sc0021182.1_g000001 Rmu_sc0026329.1_g000001
rosa_roxburghii Rroxscaffold_7G00167660
rosa_rugosa Rorug06G0297300
rosa_samantha Rh6AG409800 Rh6BG416900 Rh6CG424800 Rh6DG410300
rosa_wichuraiana Rw6G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 653
AclI AACGTT 1 cut(s) 220
AclWI GGATC 4 cut(s) 377, 542, 694, 972
AcsI RAATTY 2 cut(s) 339, 680
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 2 cut(s) 762, 788
AfiI CCNNNNNNNGG 1 cut(s) 412
AgeI ACCGGT 2 cut(s) 349, 763
AgsI TTSAA 3 cut(s) 323, 501, 539
AluBI AGCT 9 cut(s) 19, 56, 289, 457, 476, 492, 532, 557, 890
AluI AGCT 9 cut(s) 19, 56, 289, 457, 476, 492, 532, 557, 890
Alw26I GTCTC 5 cut(s) 16, 510, 594, 914, 941
AlwI GGATC 4 cut(s) 377, 542, 694, 972
AlwNI CAGNNNCTG 1 cut(s) 631
AoxI GGCC 2 cut(s) 494, 858
ApeKI GCWGC 1 cut(s) 822
ApoI RAATTY 2 cut(s) 339, 680
AsiGI ACCGGT 2 cut(s) 349, 763
Asp700I GAANNNNTTC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 347, 830
AsuC2I CCSGG 2 cut(s) 73, 345
AvaII GGWCC 2 cut(s) 347, 830
BauI CACGAG 2 cut(s) 51, 129
BbsI GAAGAC 2 cut(s) 330, 457
BbvI GCAGC 1 cut(s) 809
BceAI ACGGC 1 cut(s) 299
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 2 cut(s) 73, 345
BcoDI GTCTC 5 cut(s) 16, 510, 594, 914, 941
BfmI CTRYAG 2 cut(s) 6, 558
BisI GCNGC 1 cut(s) 823
BlsI GCNGC 1 cut(s) 824
Bme1390I CCNGG 2 cut(s) 73, 345
Bme18I GGWCC 2 cut(s) 347, 830
BmgT120I GGNCC 2 cut(s) 347, 830
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 73, 345
BmsI GCATC 2 cut(s) 350, 795
BoxI GACNNNNGTC 1 cut(s) 330
BpiI GAAGAC 2 cut(s) 330, 457
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 73, 345
Bsa29I ATCGAT 1 cut(s) 745
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 3 cut(s) 28, 349, 763
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 2 cut(s) 349, 763
Bse1I ACTGG 3 cut(s) 371, 428, 966
BseCI ATCGAT 1 cut(s) 745
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 189, 474, 915
BseNI ACTGG 3 cut(s) 371, 428, 966
BseXI GCAGC 1 cut(s) 809
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 496, 860
BshTI ACCGGT 2 cut(s) 349, 763
BshVI ATCGAT 1 cut(s) 745
BsiEI CGRYCG 1 cut(s) 72
BsiSI CCGG 6 cut(s) 29, 72, 146, 344, 350, 764
BslFI GGGAC 2 cut(s) 360, 757
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 5 cut(s) 16, 510, 594, 914, 941
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 360, 757
BsmI GAATGC 1 cut(s) 970
BsnI GGCC 2 cut(s) 496, 860
Bsp143I GATC 6 cut(s) 369, 390, 547, 686, 877, 964
BspANI GGCC 2 cut(s) 496, 860
BspCNI CTCAG 3 cut(s) 188, 475, 916
BspDI ATCGAT 1 cut(s) 745
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 4 cut(s) 377, 542, 694, 972
BsrFI RCCGGY 2 cut(s) 349, 763
BsrI ACTGG 3 cut(s) 371, 428, 966
BssAI RCCGGY 2 cut(s) 349, 763
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 6 cut(s) 369, 390, 547, 686, 877, 964
BssSI CACGAG 2 cut(s) 51, 129
Bst2BI CACGAG 2 cut(s) 51, 129
Bst4CI ACNGT 1 cut(s) 838
Bst6I CTCTTC 5 cut(s) 202, 455, 508, 534, 572
BstC8I GCNNGC 3 cut(s) 494, 636, 858
BstDEI CTNAG 5 cut(s) 15, 175, 483, 593, 924
BstF5I GGATG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 653
BstKTI GATC 6 cut(s) 372, 393, 550, 689, 880, 967
BstMAI GTCTC 5 cut(s) 16, 510, 594, 914, 941
BstMBI GATC 6 cut(s) 369, 390, 547, 686, 877, 964
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 71, 343
BstSFI CTRYAG 2 cut(s) 6, 558
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 809
BstV2I GAAGAC 2 cut(s) 330, 457
BstX2I RGATCY 1 cut(s) 964
BstYI RGATCY 1 cut(s) 964
Bsu15I ATCGAT 1 cut(s) 745
BsuRI GGCC 2 cut(s) 496, 860
BsuTUI ATCGAT 1 cut(s) 745
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 234, 364
Cac8I GCNNGC 3 cut(s) 494, 636, 858
CaiI CAGNNNCTG 1 cut(s) 631
Cfr10I RCCGGY 2 cut(s) 349, 763
Cfr13I GGNCC 2 cut(s) 347, 830
ClaI ATCGAT 1 cut(s) 745
Csp6I GTAC 2 cut(s) 761, 787
CspAI ACCGGT 2 cut(s) 349, 763
CviAII CATG 1 cut(s) 944
CviQI GTAC 2 cut(s) 761, 787
DdeI CTNAG 5 cut(s) 15, 175, 483, 593, 924
DpnI GATC 6 cut(s) 371, 392, 549, 688, 879, 966
DpnII GATC 6 cut(s) 369, 390, 547, 686, 877, 964
Eam1104I CTCTTC 5 cut(s) 202, 455, 508, 534, 572
EarI CTCTTC 5 cut(s) 202, 455, 508, 534, 572
Eco147I AGGCCT 1 cut(s) 860
Eco47I GGWCC 2 cut(s) 347, 830
Eco57I CTGAAG 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 1 cut(s) 947
FaiI YATR 7 cut(s) 8, 396, 560, 750, 803, 842, 945
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 2 cut(s) 360, 757
FatI CATG 1 cut(s) 943
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 1 cut(s) 823
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 823
GluI GCNGC 1 cut(s) 823
HaeIII GGCC 2 cut(s) 496, 860
HapII CCGG 6 cut(s) 29, 72, 146, 344, 350, 764
Hin1II CATG 1 cut(s) 947
HindIII AAGCTT 2 cut(s) 17, 474
HinfI GANTC 4 cut(s) 47, 124, 164, 191
HpaII CCGG 6 cut(s) 29, 72, 146, 344, 350, 764
Hpy166II GTNNAC 2 cut(s) 232, 718
Hpy188I TCNGA 4 cut(s) 217, 385, 622, 899
Hpy188III TCNNGA 3 cut(s) 51, 355, 434
Hpy8I GTNNAC 2 cut(s) 232, 718
Hpy99I CGWCG 5 cut(s) 154, 268, 314, 320, 413
HpyAV CCTTC 3 cut(s) 507, 561, 859
HpyCH4III ACNGT 1 cut(s) 838
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 808, 856, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 5 cut(s) 15, 175, 483, 593, 924
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 947
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 6 cut(s) 369, 390, 547, 686, 877, 964
Lsp1109I GCAGC 1 cut(s) 809
LweI GCATC 2 cut(s) 350, 795
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 4 cut(s) 48, 88, 133, 253
MalI GATC 6 cut(s) 371, 392, 549, 688, 879, 966
MboI GATC 6 cut(s) 369, 390, 547, 686, 877, 964
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 1 cut(s) 964
MluCI AATT 8 cut(s) 169, 339, 379, 566, 612, 639, 680, 697
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 686
MnlI CCTC 8 cut(s) 71, 205, 223, 316, 406, 573, 806, 871
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 6 cut(s) 33, 84, 600, 731, 768, 873
MspI CCGG 6 cut(s) 29, 72, 146, 344, 350, 764
MspR9I CCNGG 2 cut(s) 73, 345
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 970
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 2 cut(s) 73, 345
NdeII GATC 6 cut(s) 369, 390, 547, 686, 877, 964
NlaIII CATG 1 cut(s) 947
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 48, 133
PceI AGGCCT 1 cut(s) 860
PcsI WCGNNNNNNNCGW 3 cut(s) 221, 306, 751
PctI GAATGC 1 cut(s) 970
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 3 cut(s) 124, 164, 191
PfoI TCCNGGA 1 cut(s) 343
PinAI ACCGGT 2 cut(s) 349, 763
PkrI GCNGC 1 cut(s) 824
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 347, 830
PstNI CAGNNNCTG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 964
RsaI GTAC 2 cut(s) 762, 788
RsaNI GTAC 2 cut(s) 761, 787
SaqAI TTAA 6 cut(s) 33, 84, 600, 731, 768, 873
SatI GCNGC 1 cut(s) 823
Sau3AI GATC 6 cut(s) 369, 390, 547, 686, 877, 964
Sau96I GGNCC 2 cut(s) 347, 830
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 73, 345
SfaNI GCATC 2 cut(s) 350, 795
SfcI CTRYAG 2 cut(s) 6, 558
SinI GGWCC 2 cut(s) 347, 830
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 8 cut(s) 169, 339, 379, 566, 612, 639, 680, 697
SseBI AGGCCT 1 cut(s) 860
StuI AGGCCT 1 cut(s) 860
StyD4I CCNGG 2 cut(s) 71, 343
TaaI ACNGT 1 cut(s) 838
TaiI ACGT 1 cut(s) 223
TaqI TCGA 5 cut(s) 68, 182, 266, 453, 745
TasI AATT 8 cut(s) 169, 339, 379, 566, 612, 639, 680, 697
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 3 cut(s) 124, 164, 191
Tru1I TTAA 6 cut(s) 33, 84, 600, 731, 768, 873
Tru9I TTAA 6 cut(s) 33, 84, 600, 731, 768, 873
TscAI CASTG 2 cut(s) 234, 371
TseFI GTSAC 2 cut(s) 48, 133
TseI GCWGC 1 cut(s) 822
Tsp45I GTSAC 2 cut(s) 48, 133
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 4 cut(s) 252, 286, 291, 298
TspRI CASTG 2 cut(s) 234, 371
VpaK11BI GGWCC 2 cut(s) 347, 830
XapI RAATTY 2 cut(s) 339, 680
XmnI GAANNNNTTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.