Rh6DG410300

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012176
Physical Location & Seq
Reverse (-)
59633215 .. 59637387
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG410300.1

Sequence Viewer

Length: 666 bp
ATGGCAATGTCTCTGGCCACTGAGCTCCAATCTTCAATCTGCGAGCCTCGCGCCGTTCTCGGCCCCGGTGGGAACAGAGTTAGGGTTTCGGAGGGACCTAAACACAAATACGAGGGACTCAAGAAGCCACCGCAGAGGCCGAGAAAAGAAATTCCGGAATCGGTTGTCCGGAAAAACGTTTCGGTAGACAGCTCGTGCTCTTCAGACACCTCTTCCACTGGCTCCTCTCCCAAAACGGCCAGTCCTAGAAGGACTGTAAGGCATAAGAGCTTGAGGCCTGCCAAGCTTGTTTCAAACGACGTCGTCAAGCCTGACGGTCCACCTAAGCGATGTGAATGGATTACAGCTTACTCCGACCCACATTATATTTCTTTCCACGATGAAGAATGGGGAATTCCAGTGTATGATGATAAGAAGCTGTTTGAACTACTCGTCCTTTCGCAATCTCTAGCAGAACTCAGTTGGCCTGAAATTCTTACCAAGAGGGACATATTCAGGTGTGCTTGTTTCCATTTCATCTTTCATTTGAGTTTTGTGAAGAATGGTGCCCTTATGCTTAATGCTTTTTATGGTTGTTTCATGTCTTTGGCAGGAATCTTTTTGACAACTTTGATCCTTCATCCATTGCAAAGTTTGATGAGAAGAAGTTACTGTCACTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

221

Amino Acids

24.89

Weight (kDa)

9.36

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 117 - 172 1.3e-17 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15970 AT1G15970 AT1G75090 AT1G80850
fragaria_vesca FvH4_2g40160
malus_domestica MD08G1035300.v1.1
prunus_persica Prupe.1G382800_v2.0.a1
pyrus_communis pycom08g02790
rosa_chinensis RchiOBHm_Chr6g0300571
rosa_laevigata RLG00000011323
rosa_multiflora Rmu_sc0021182.1_g000001 Rmu_sc0026329.1_g000001
rosa_roxburghii Rroxscaffold_7G00167660
rosa_rugosa Rorug06G0297300
rosa_samantha Rh6AG409800 Rh6BG416900 Rh6CG424800 Rh6DG410300
rosa_wichuraiana Rw6G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 545
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 51
AccIII TCCGGA 2 cut(s) 154, 168
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 177
AclWI GGATC 1 cut(s) 607
AcoI YGGCCR 2 cut(s) 15, 237
AcsI RAATTY 3 cut(s) 150, 393, 471
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 300
AgsI TTSAA 3 cut(s) 36, 294, 425
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
AluBI AGCT 6 cut(s) 25, 192, 270, 286, 347, 418
AluI AGCT 6 cut(s) 25, 192, 270, 286, 347, 418
Alw21I GWGCWC 2 cut(s) 27, 200
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 607
Aor13HI TCCGGA 2 cut(s) 154, 168
AoxI GGCC 6 cut(s) 15, 61, 137, 237, 275, 464
ApoI RAATTY 3 cut(s) 150, 393, 471
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 62, 95, 317
AsuC2I CCSGG 1 cut(s) 66
AvaII GGWCC 2 cut(s) 95, 317
BaeGI GKGCMC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 27
BauI CACGAG 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 27, 200
BceAI ACGGC 2 cut(s) 38, 252
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 246, 449
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 2 cut(s) 95, 317
BmgT120I GGNCC 3 cut(s) 62, 95, 317
BmiI GGNNCC 4 cut(s) 64, 96, 223, 547
BmrFI CCNGG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 104, 292
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 2 cut(s) 154, 168
Bse1I ACTGG 3 cut(s) 223, 240, 398
Bse3DI GCAATG 2 cut(s) 12, 623
BseAI TCCGGA 2 cut(s) 154, 168
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 619
BseMI GCAATG 2 cut(s) 12, 623
BseMII CTCAG 2 cut(s) 12, 472
BseNI ACTGG 3 cut(s) 223, 240, 398
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
BshNI GGYRCC 1 cut(s) 545
BsiHKAI GWGCWC 2 cut(s) 27, 200
BsiSI CCGG 3 cut(s) 66, 155, 169
BslFI GGGAC 3 cut(s) 108, 129, 500
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 108, 129, 500
BsnI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
Bsp1286I GDGCHC 3 cut(s) 27, 200, 550
Bsp13I TCCGGA 2 cut(s) 154, 168
Bsp143I GATC 1 cut(s) 612
BspACI CCGC 1 cut(s) 131
BspANI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
BspCNI CTCAG 2 cut(s) 13, 471
BspEI TCCGGA 2 cut(s) 154, 168
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 64, 96, 223, 547
BspPI GGATC 1 cut(s) 607
BspQI GCTCTTC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 12, 623
BsrI ACTGG 3 cut(s) 223, 240, 398
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 612
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst4CI ACNGT 3 cut(s) 256, 317, 653
Bst6I CTCTTC 2 cut(s) 205, 217
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 44, 279
BstDEI CTNAG 3 cut(s) 21, 324, 458
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 615
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 612
BstMWI GCNNNNNNNGC 2 cut(s) 48, 283
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 550
BstUI CGCG 1 cut(s) 51
BsuRI GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 619
BtsIMutI CAGTG 3 cut(s) 18, 216, 405
Cac8I GCNNGC 2 cut(s) 44, 279
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 62, 95, 317
CviAII CATG 1 cut(s) 580
DdeI CTNAG 3 cut(s) 21, 324, 458
DpnI GATC 1 cut(s) 614
DpnII GATC 1 cut(s) 612
EaeI YGGCCR 2 cut(s) 15, 237
Eam1104I CTCTTC 2 cut(s) 205, 217
EarI CTCTTC 2 cut(s) 205, 217
Ecl136II GAGCTC 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 95, 317
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 1 cut(s) 583
FaiI YATR 7 cut(s) 264, 366, 405, 491, 554, 570, 581
FaqI GGGAC 3 cut(s) 108, 129, 500
FatI CATG 1 cut(s) 579
FblI GTMKAC 1 cut(s) 186
FokI GGATG 1 cut(s) 606
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 2 cut(s) 246, 449
GlaI GCGC 1 cut(s) 52
HaeIII GGCC 6 cut(s) 17, 63, 139, 239, 277, 466
HapII CCGG 3 cut(s) 66, 155, 169
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 117, 158, 594
HpaII CCGG 3 cut(s) 66, 155, 169
Hpy166II GTNNAC 2 cut(s) 187, 320
Hpy188I TCNGA 3 cut(s) 91, 205, 355
Hpy188III TCNNGA 3 cut(s) 121, 155, 169
Hpy8I GTNNAC 2 cut(s) 187, 320
Hpy99I CGWCG 2 cut(s) 302, 305
HpyAV CCTTC 2 cut(s) 243, 626
HpyCH4III ACNGT 3 cut(s) 256, 317, 653
HpyCH4IV ACGT 2 cut(s) 177, 300
HpyCH4V TGCA 1 cut(s) 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 283
HpyF3I CTNAG 3 cut(s) 21, 324, 458
HpySE526I ACGT 2 cut(s) 177, 300
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 1 cut(s) 51
Kpn2I TCCGGA 2 cut(s) 154, 168
Kzo9I GATC 1 cut(s) 612
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 30, 227
MaeI CTAG 2 cut(s) 246, 449
MaeII ACGT 2 cut(s) 177, 300
MaeIII GTNAC 2 cut(s) 647, 653
MalI GATC 1 cut(s) 614
MboI GATC 1 cut(s) 612
MboII GAAGA 6 cut(s) 24, 192, 204, 395, 550, 654
MhlI GDGCHC 3 cut(s) 27, 200, 550
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 3 cut(s) 150, 393, 471
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 8 cut(s) 57, 85, 106, 129, 220, 235, 267, 477
Mox20I TGGCCA 1 cut(s) 17
MroI TCCGGA 2 cut(s) 154, 168
MscI TGGCCA 1 cut(s) 17
MseI TTAA 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 3 cut(s) 66, 155, 169
MspR9I CCNGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 48, 283
NciI CCSGG 1 cut(s) 66
NdeII GATC 1 cut(s) 612
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 4 cut(s) 64, 96, 223, 547
NmeAIII GCCGAG 2 cut(s) 39, 165
NmuCI GTSAC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 158, 594
PflFI GACNNNGTC 1 cut(s) 302
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 27
Psp1406I AACGTT 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 95
PspN4I GGNNCC 4 cut(s) 64, 96, 223, 547
PspPI GGNCC 3 cut(s) 62, 95, 317
PspPPI RGGWCCY 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 302
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 558
Sau3AI GATC 1 cut(s) 612
Sau96I GGNCC 3 cut(s) 62, 95, 317
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 3 cut(s) 27, 200, 550
SinI GGWCC 2 cut(s) 95, 317
SmlI CTYRAG 2 cut(s) 119, 271
SmoI CTYRAG 2 cut(s) 119, 271
Sse9I AATT 3 cut(s) 150, 393, 471
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 246, 449
SstI GAGCTC 1 cut(s) 27
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 3 cut(s) 256, 317, 653
TaiI ACGT 2 cut(s) 180, 303
TasI AATT 3 cut(s) 150, 393, 471
TfiI GAWTC 2 cut(s) 158, 594
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 3 cut(s) 25, 223, 405
TseFI GTSAC 1 cut(s) 653
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 5 cut(s) 396, 505, 512, 568, 608
TspRI CASTG 3 cut(s) 25, 223, 405
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 95, 317
XapI RAATTY 3 cut(s) 150, 393, 471
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 246, 449
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.