AT1G16170

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5538666 .. 5540002
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16170.1

Sequence Viewer

Length: 279 bp
ATGGTTCTTGATGGGCTTGTATCTTCACCGTCAAGGAGACAACAATGTCTAAAGAAGCAGTGGGACGAGTTGGGTAGCTGGTCGACTCTTATTCAGAGGCATCAATATCTCTTAACAGCTTTGGCTCTTTTGGCTTTCCTCTGTACTGTTTATCTTTACTTTGCAGTCACTTTAGGCGCTAGGCACTCGTCCTGCTATGGCTTGACCGGGAAAGACAAGGCAATGTGTCAATTACAACTTGTTCAAGCTCTCTCCAAAGGGAAACTTAAATTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.39

Weight (kDa)

9.55

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 45
AccI GTMKAC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 3 cut(s) 78, 119, 248
AluI AGCT 3 cut(s) 78, 119, 248
Alw26I GTCTC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 18
BccI CCATC 1 cut(s) 5
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 2 cut(s) 180, 277
BfoI RGCGCY 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 30, 148
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 144
CviJI RGCY 7 cut(s) 16, 78, 119, 125, 134, 201, 248
CviKI_1 RGCY 7 cut(s) 16, 78, 119, 125, 134, 201, 248
CviQI GTAC 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 45
DseDI GACNNNNNNGTC 1 cut(s) 45
FaiI YATR 1 cut(s) 198
FalI AAGNNNNNCTT 1 cut(s) 249
FaqI GGGAC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 83
FspBI CTAG 2 cut(s) 180, 277
GlaI GCGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 180
HapII CCGG 1 cut(s) 207
HhaI GCGC 1 cut(s) 179
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 30, 148
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HspAI GCGC 1 cut(s) 177
LpnPI CCDG 3 cut(s) 64, 205, 220
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 180, 277
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 2 cut(s) 15, 265
MluCI AATT 2 cut(s) 230, 269
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 2 cut(s) 90, 149
MseI TTAA 2 cut(s) 113, 267
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 166
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 113, 267
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 208
SetI ASST 3 cut(s) 80, 121, 250
SfaNI GCATC 1 cut(s) 109
Sse9I AATT 2 cut(s) 230, 269
SspMI CTAG 2 cut(s) 180, 277
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 30, 148
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 230, 269
TatI WGTACW 1 cut(s) 143
Tru1I TTAA 2 cut(s) 113, 267
Tru9I TTAA 2 cut(s) 113, 267
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspRI CASTG 1 cut(s) 65
XapI RAATTY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 2 cut(s) 180, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.