Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Reverse (-)

4665280 .. 4669609

Gene Structure 4330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04072.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGTCTCAGCTTTATCATGGCTTTGGTTTAGATGGTGGATTGCATGGTGTTGTTTTGAGGGAGTTCTTCCTCTTGGTCATGGGTTTTCATATGATTTGTGCATTGAGATTCAGTAAGCATCGGGTACTCGGGCAGCTATGCTCTGATTTAGTACTCCTCACTTACTCACAGCTGTTGGCGGCGATGGCGACGACAATGTCGGCGTGCATGGGTGGTGTGTATGAGGAATGTAAGGGAATCCAATCCATCTTAATTTGCCTCATCGGAACAATCTCCTTCTCTTCTCTCTGCACCGAACCAATCCCAATCTCCATCGATAACAACCGAGGCGCCACTGTCGCCAACAACGTCGAGATCAGCCCCTACTTCGACGGCGAAGAAGCGGAGAAGCTTACAAAGATGACCGGTGTAGAAGCAACAAATCTAGTTGAGAGGCCGTGTCATCTTGAAGGGAAGAGTGATGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.13

Weight (kDa)

5.46

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	2 cut(s)	182, 386
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	129, 156
AgeI	ACCGGT	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	452
AluBI	AGCT	4 cut(s)	13, 139, 175, 394
AluI	AGCT	4 cut(s)	13, 139, 175, 394
Alw26I	GTCTC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	136
AsiGI	ACCGGT	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	29, 181, 257, 323
BceAI	ACGGC	2 cut(s)	391, 424
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	2 cut(s)	137, 183
BlsI	GCNGC	2 cut(s)	138, 184
BmcAI	AGTACT	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	334
BmsI	GCATC	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	407
Bse118I	RCCGGY	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	332
BshTI	ACCGGT	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	2 cut(s)	182, 386
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	289, 452
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 341
BstV1I	GCAGC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	128, 155
CspAI	ACCGGT	1 cut(s)	407
CviAII	CATG	4 cut(s)	20, 47, 82, 211
CviJI	RGCY	7 cut(s)	13, 24, 139, 175, 363, 394, 439
CviKI_1	RGCY	7 cut(s)	13, 24, 139, 175, 363, 394, 439
CviQI	GTAC	2 cut(s)	128, 155
DdeI	CTNAG	1 cut(s)	9
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	289, 452
EarI	CTCTTC	2 cut(s)	289, 452
Eco88I	CYCGRG	1 cut(s)	131
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	4 cut(s)	23, 50, 85, 214
FaiI	YATR	8 cut(s)	21, 48, 83, 93, 95, 142, 212, 225
FatI	CATG	4 cut(s)	19, 46, 81, 210
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	137, 183
Fsp4HI	GCNGC	2 cut(s)	137, 183
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	137, 183
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	23, 50, 85, 214
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	111, 240
HpaII	CCGG	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	148, 269
Hpy188III	TCNNGA	2 cut(s)	355, 449
Hpy99I	CGWCG	3 cut(s)	196, 356, 377
HpyAV	CCTTC	2 cut(s)	289, 446
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	4 cut(s)	46, 104, 210, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 341
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	23, 50, 85, 214
HspAI	GCGC	1 cut(s)	333
KasI	GGCGCC	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	357
LpnPI	CCDG	1 cut(s)	421
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	351
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	4 cut(s)	61, 276, 392, 469
MluCI	AATT	1 cut(s)	255
Mly113I	GGCGCC	1 cut(s)	333
MnlI	CCTC	7 cut(s)	54, 83, 170, 220, 272, 323, 429
MseI	TTAA	2 cut(s)	254, 472
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	188, 341
NarI	GGCGCC	1 cut(s)	333
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	23, 50, 85, 214
NlaIV	GGNNCC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	111, 240
PflFI	GACNNNGTC	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	138, 184
PluTI	GGCGCC	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	129, 156
RsaNI	GTAC	2 cut(s)	128, 155
SaqAI	TTAA	2 cut(s)	254, 472
SatI	GCNGC	2 cut(s)	137, 183
Sau3AI	GATC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	156
SetI	ASST	5 cut(s)	15, 141, 177, 354, 396
SfaNI	GCATC	1 cut(s)	130
SfoI	GGCGCC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	182, 386
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	318, 354, 372
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	111, 240
Tru1I	TTAA	2 cut(s)	254, 472
Tru9I	TTAA	2 cut(s)	254, 472
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	17, 80
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	199
XspI	CTAG	1 cut(s)	428
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.