Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Reverse (-)

11534375 .. 11537669

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18101.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTTAAAGCTAACATGGAGAGGTAGGCAACGAGGAGAGGATTTCATTGAGACAGGTGCGCCGCCTTATCGTCGCTGGACAGAGGAGTTACCATCGATTTCACCGTCTCGGGTCGAGGAACCAAGTTTCGAGCCCAAAAACTTTGAGGAATCTGTTGGAGACGCTCTTAGCTTGTCAAATATTATCGAGGCACAAACGATCGATCCATATGGCCTTGACTTATCACCCTTGCATGCACATGTGGAAAAGTCTCAATCTCTCGTCCGGCTGCGCCACGGCGTTGGTTTTGGCCGTAGGCCAAGCCGGTGCACGAGAATACGCAAGAGGAAAGATTGTAGGCGATCGGGGCGATTAGAGAATGGAGGTCGAATTGTTGTCAGTGATTCGACGGACAGCCTCGCCAGCGAGTCGGGACTGTTGGGATTCCTCCATATTCATATTCCAATTAATCTTCTTTCGTTTCTAGATGATTGGTGGGTGATTGGTAAACATTGGTGGGTGTGTCGAGGTGGTCGAAGTTCTTGTTTGATAGGCTGGTCGAGGTCGGTGGTTCGACCGGCTAGTCGAGGTCGGTGCTTCAACCGACTGATCTTGTGGTCGGAGCCTGACGACGTTTCTGATCTCGATGGCGCATCGCAGGAAATGGTGGAGCAAGCTAGTCTCTGGTGCAACATAAGGAAGGAACTAGGTGTGCCATGTTGCATTGTGGGATTTGGCACGGCGCACGCTAGTGTTAGTGGGAGAATGACGGTGCGGTGGATGGTACGGCGCAGTGGTGGTTTGGGACTGAGAAGGCAAAGCATGGGATTGATGCCTTGGTTTCTTGGGCCTTTTTTAGTTTTATCAGGCTCCATGTTTACGGGTCATGTCACCCTTATGGTGTGGTTTTATCCCTATGTGGATTATTCTGGCTTGGTCCAGTACGAGAGGACTCGGTTCCTCAAATTGGTGTCAATCGATCCCAACTTTTCAAAAATTATTGCATCAATTACTTGGACATCAGTGCTCCGATTTAGCACTCCTTATTATCTCACAATTGCTAACGGCGATGGCGACGACGACGGCAATGTTAGCTTGTATAAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

41.02

Weight (kDa)

9.14

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
AciI	CCGC	2 cut(s)	62, 754
AclWI	GGATC	2 cut(s)	197, 953
AcoI	YGGCCR	1 cut(s)	289
AfaI	GTAC	2 cut(s)	765, 923
AfiI	CCNNNNNNNGG	1 cut(s)	946
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	580, 972
AleI	CACNNNNGTG	1 cut(s)	729
AluBI	AGCT	4 cut(s)	10, 171, 656, 1074
AluI	AGCT	4 cut(s)	10, 171, 656, 1074
Alw21I	GWGCWC	2 cut(s)	311, 1008
Alw26I	GTCTC	5 cut(s)	44, 111, 153, 255, 665
Alw44I	GTGCAC	1 cut(s)	307
AlwI	GGATC	2 cut(s)	197, 953
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	4 cut(s)	211, 289, 296, 827
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	268
AseI	ATTAAT	1 cut(s)	447
AspLEI	GCGC	5 cut(s)	61, 273, 632, 724, 771
AspS9I	GGNCC	2 cut(s)	827, 916
AsuHPI	GGTGA	4 cut(s)	93, 216, 490, 862
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	310
Bbv12I	GWGCWC	2 cut(s)	311, 1008
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	4 cut(s)	100, 620, 754, 1043
BceAI	ACGGC	6 cut(s)	276, 292, 735, 782, 1060, 1078
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BcoDI	GTCTC	5 cut(s)	44, 111, 153, 255, 665
BfaI	CTAG	5 cut(s)	464, 561, 657, 686, 729
BisI	GCNGC	2 cut(s)	62, 269
BlsI	GCNGC	2 cut(s)	63, 270
Bme18I	GGWCC	1 cut(s)	916
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	827, 916
BmiI	GGNNCC	4 cut(s)	120, 603, 850, 938
BmsI	GCATC	3 cut(s)	641, 801, 992
Bsa29I	ATCGAT	3 cut(s)	95, 201, 957
BsaJI	CCNNGG	2 cut(s)	274, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	946
Bse118I	RCCGGY	2 cut(s)	303, 556
Bse1I	ACTGG	1 cut(s)	919
Bse3DI	GCAATG	1 cut(s)	1072
BseCI	ATCGAT	3 cut(s)	95, 201, 957
BseDI	CCNNGG	2 cut(s)	274, 815
BseGI	GGATG	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	946
BseMI	GCAATG	1 cut(s)	1072
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	2 cut(s)	48, 98
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	255
Bsh1285I	CGRYCG	3 cut(s)	201, 344, 557
BshFI	GGCC	4 cut(s)	213, 291, 298, 829
BshVI	ATCGAT	3 cut(s)	95, 201, 957
BsiEI	CGRYCG	3 cut(s)	201, 344, 557
BsiHKAI	GWGCWC	2 cut(s)	311, 1008
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	265, 304, 557
BslFI	GGGAC	2 cut(s)	426, 798
BslI	CCNNNNNNNGG	1 cut(s)	946
BsmAI	GTCTC	5 cut(s)	44, 111, 153, 255, 665
BsmBI	CGTCTC	2 cut(s)	111, 153
BsmFI	GGGAC	2 cut(s)	426, 798
BsnI	GGCC	4 cut(s)	213, 291, 298, 829
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	135, 311, 1008
Bsp143I	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
BspACI	CCGC	2 cut(s)	62, 754
BspANI	GGCC	4 cut(s)	213, 291, 298, 829
BspCNI	CTCAG	1 cut(s)	780
BspDI	ATCGAT	3 cut(s)	95, 201, 957
BspLI	GGNNCC	4 cut(s)	120, 603, 850, 938
BspPI	GGATC	2 cut(s)	197, 953
BsrDI	GCAATG	1 cut(s)	1072
BsrFI	RCCGGY	2 cut(s)	303, 556
BsrI	ACTGG	1 cut(s)	919
BssAI	RCCGGY	2 cut(s)	303, 556
BssECI	CCNNGG	2 cut(s)	274, 815
BssMI	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
BssSI	CACGAG	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	815
Bst2BI	CACGAG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	105, 417, 751
BstC8I	GCNNGC	4 cut(s)	234, 403, 654, 726
BstDEI	CTNAG	2 cut(s)	167, 788
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	765
BstHHI	GCGC	5 cut(s)	61, 273, 632, 724, 771
BstKTI	GATC	6 cut(s)	201, 205, 344, 591, 622, 961
BstMAI	GTCTC	5 cut(s)	44, 111, 153, 255, 665
BstMBI	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
BstMCI	CGRYCG	3 cut(s)	201, 344, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 402, 1071
BstNSI	RCATGY	2 cut(s)	236, 242
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	281
Bsu15I	ATCGAT	3 cut(s)	95, 201, 957
BsuRI	GGCC	4 cut(s)	213, 291, 298, 829
BsuTUI	ATCGAT	3 cut(s)	95, 201, 957
BtgI	CCRYGG	1 cut(s)	274
BtgZI	GCGATG	2 cut(s)	618, 1062
BtsCI	GGATG	1 cut(s)	765
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	3 cut(s)	385, 778, 1008
Cac8I	GCNNGC	4 cut(s)	234, 403, 654, 726
CfoI	GCGC	5 cut(s)	61, 273, 632, 724, 771
Cfr10I	RCCGGY	2 cut(s)	303, 556
Cfr13I	GGNCC	2 cut(s)	827, 916
ClaI	ATCGAT	3 cut(s)	95, 201, 957
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	764, 922
CviAII	CATG	7 cut(s)	15, 233, 239, 696, 802, 853, 866
CviQI	GTAC	2 cut(s)	764, 922
DdeI	CTNAG	2 cut(s)	167, 788
DpnI	GATC	6 cut(s)	200, 204, 343, 590, 621, 960
DpnII	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
DrdI	GACNNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	815
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	916
Eco88I	CYCGRG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	815
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	815
Esp3I	CGTCTC	2 cut(s)	111, 153
FaeI	CATG	7 cut(s)	18, 236, 242, 699, 805, 856, 869
FaqI	GGGAC	2 cut(s)	426, 798
FatI	CATG	7 cut(s)	14, 232, 238, 695, 801, 852, 865
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	62, 269
FokI	GGATG	1 cut(s)	772
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	62, 269
FspBI	CTAG	5 cut(s)	464, 561, 657, 686, 729
GlaI	GCGC	5 cut(s)	60, 272, 631, 723, 770
GluI	GCNGC	2 cut(s)	62, 269
HaeIII	GGCC	4 cut(s)	213, 291, 298, 829
HapII	CCGG	3 cut(s)	265, 304, 557
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	5 cut(s)	61, 273, 632, 724, 771
Hin1II	CATG	7 cut(s)	18, 236, 242, 699, 805, 856, 869
Hin6I	GCGC	5 cut(s)	59, 271, 630, 722, 769
HinP1I	GCGC	5 cut(s)	59, 271, 630, 722, 769
HinfI	GANTC	5 cut(s)	149, 383, 407, 423, 931
HpaII	CCGG	3 cut(s)	265, 304, 557
HphI	GGTGA	4 cut(s)	93, 216, 490, 862
Hpy166II	GTNNAC	3 cut(s)	309, 488, 858
Hpy188I	TCNGA	3 cut(s)	601, 619, 1010
Hpy188III	TCNNGA	3 cut(s)	411, 464, 623
Hpy8I	GTNNAC	3 cut(s)	309, 488, 858
Hpy99I	CGWCG	6 cut(s)	75, 391, 614, 1058, 1061, 1064
HpyAV	CCTTC	2 cut(s)	673, 786
HpyCH4III	ACNGT	3 cut(s)	105, 417, 751
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	232, 236, 309, 669, 702, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 402, 1071
HpyF3I	CTNAG	2 cut(s)	167, 788
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	7 cut(s)	18, 236, 242, 699, 805, 856, 869
HspAI	GCGC	5 cut(s)	59, 271, 630, 722, 769
Kzo9I	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
LmnI	GCTCC	4 cut(s)	601, 649, 854, 1011
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	3 cut(s)	641, 801, 992
MaeI	CTAG	5 cut(s)	464, 561, 657, 686, 729
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	87, 868
MalI	GATC	6 cut(s)	200, 204, 343, 590, 621, 960
MboI	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
MboII	GAAGA	1 cut(s)	443
MfeI	CAATTG	1 cut(s)	1035
MhlI	GDGCHC	3 cut(s)	135, 311, 1008
MluCI	AATT	6 cut(s)	369, 444, 944, 975, 987, 1035
MlyI	GAGTC	2 cut(s)	416, 925
MmeI	TCCRAC	2 cut(s)	136, 579
MseI	TTAA	2 cut(s)	5, 447
MslI	CAYNNNNRTG	3 cut(s)	237, 729, 875
MspI	CCGG	3 cut(s)	265, 304, 557
MunI	CAATTG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	3 cut(s)	346, 402, 1071
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
NlaIII	CATG	7 cut(s)	18, 236, 242, 699, 805, 856, 869
NlaIV	GGNNCC	4 cut(s)	120, 603, 850, 938
NmuCI	GTSAC	1 cut(s)	868
NspI	RCATGY	2 cut(s)	236, 242
OliI	CACNNNNGTG	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	236
PciI	ACATGT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	3 cut(s)	101, 511, 1050
PfeI	GAWTC	3 cut(s)	149, 383, 423
PkrI	GCNGC	2 cut(s)	63, 270
Ple19I	CGATCG	2 cut(s)	201, 344
PleI	GAGTC	2 cut(s)	415, 925
PpsI	GAGTC	2 cut(s)	415, 925
PscI	ACATGT	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	447
PspN4I	GGNNCC	4 cut(s)	120, 603, 850, 938
PspPI	GGNCC	2 cut(s)	827, 916
PvuI	CGATCG	2 cut(s)	201, 344
RsaI	GTAC	2 cut(s)	765, 923
RsaNI	GTAC	2 cut(s)	764, 922
RseI	CAYNNNNRTG	3 cut(s)	237, 729, 875
SaqAI	TTAA	2 cut(s)	5, 447
SatI	GCNGC	2 cut(s)	62, 269
Sau3AI	GATC	6 cut(s)	198, 202, 341, 588, 619, 958
Sau96I	GGNCC	2 cut(s)	827, 916
SchI	GAGTC	2 cut(s)	416, 925
SduI	GDGCHC	3 cut(s)	135, 311, 1008
SfaNI	GCATC	3 cut(s)	641, 801, 992
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	3 cut(s)	237, 729, 875
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	6 cut(s)	369, 444, 944, 975, 987, 1035
SsiI	CCGC	2 cut(s)	62, 754
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	5 cut(s)	464, 561, 657, 686, 729
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	3 cut(s)	105, 417, 751
TaiI	ACGT	1 cut(s)	615
TasI	AATT	6 cut(s)	369, 444, 944, 975, 987, 1035
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	149, 383, 423
Tru1I	TTAA	2 cut(s)	5, 447
Tru9I	TTAA	2 cut(s)	5, 447
TscAI	CASTG	3 cut(s)	385, 778, 1008
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	2 cut(s)	34, 425
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	385, 778, 1008
VneI	GTGCAC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	916
VspI	ATTAAT	1 cut(s)	447
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	2 cut(s)	236, 242
XspI	CTAG	5 cut(s)	464, 561, 657, 686, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.