Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Forward (+)

15275656 .. 15276933

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCCGAGCCGATGCACGTGGAGGGCGGCCGGACGGGAAGACAATTCATGGGTTATGTCTGTGGCTCGATTATGGATCGGGGGTGGAGCAAAGGAGGTCTTATCAGGACTTCTCGGGCTCCAGATCCGGATCTAGTTCCTGTCACGAAACTTGATGGTCGCTGGGTTGAGGGATGCTACAGTGGCTCGGTTGTGGTGGCAATACAATACCGACAGCGTGGCATCAGGTTCGACAAGGCGGCGACGTCACATTTGCGGCAGAAGGTCGAGAATGGGTGGTCTGCCATAGCTCATTGGGCCTGGACATACCCATTTTGGGCTAGTGGGTTTGGGCTTTGGCCTCATGATCAGTGGACTTGTGCCTGGGCCTGGGCCTTGGCCTGGGTCTGGGTTTGTGACCCTCATGAGATCGGGAGGACTCGGTTCCTCATACCGATGTCAACCAATCTCAACTCTTTCCAGATACTTGGTCACCTAACACCAAAACAACTCTTTGGCACTTACCTATTGGATTATGGGTGCTTATGCGTGGGTTTATCACCCCCCATTTTCTTTGGTTCTGGTTCTGGTTCTTGGATATGGTTTTCGGTCTTCTCTCGGCAGCCTCAGCTTTATCATAGCTTTGGTTTAGATGGTGGATTGCATGATGTTGTTTTGAGGGAGTTCTTCCTCTTGGTCATGGGTTTCCATATGATTTGTGCATTGAGATTTGGTAAGCATCGGGTACTCGGGCAGCTATGCTCTGATTTAGCACTCCTCACTTACTCACAGTTGCTGGTGGCGATGGCGACGACAATGTCAGCGTGCATGGGTGGACTTTCGGTCCATAGATTAGCGAGTTGTTGGTTTCCTTTTACTCTTTCTATGTTGATTGAGTTTGAGACTTATGCTCTTTCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.84

Weight (kDa)

8.53

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	796
AatII	GACGTC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	3 cut(s)	27, 239, 256
AclWI	GGATC	3 cut(s)	84, 119, 138
AcoI	YGGCCR	2 cut(s)	3, 28
AcvI	CACGTG	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	4 cut(s)	316, 369, 381, 387
AhdI	GACNNNNNGTC	1 cut(s)	821
AjnI	CCWGG	4 cut(s)	299, 362, 368, 380
AluBI	AGCT	4 cut(s)	290, 610, 621, 736
AluI	AGCT	4 cut(s)	290, 610, 621, 736
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	3 cut(s)	84, 119, 138
AlwNI	CAGNNNCTG	1 cut(s)	775
Ama87I	CYCGRG	2 cut(s)	114, 728
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	7 cut(s)	3, 28, 297, 338, 366, 372, 378
ApeKI	GCWGC	2 cut(s)	601, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspS9I	GGNCC	4 cut(s)	297, 366, 372, 823
AsuHPI	GGTGA	2 cut(s)	464, 531
AvaI	CYCGRG	2 cut(s)	114, 728
AvaII	GGWCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	121
BbrPI	CACGTG	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	46, 583
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	613, 745
BccI	CCATC	3 cut(s)	149, 626, 778
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	4 cut(s)	301, 364, 370, 382
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	2 cut(s)	134, 321
BfmI	CTRYAG	1 cut(s)	178
BisI	GCNGC	5 cut(s)	28, 240, 257, 602, 734
BlsI	GCNGC	5 cut(s)	29, 241, 258, 603, 735
Bme1390I	CCNGG	4 cut(s)	301, 364, 370, 382
Bme18I	GGWCC	1 cut(s)	823
BmeRI	GACNNNNNGTC	1 cut(s)	821
BmeT110I	CYCGRG	2 cut(s)	114, 728
BmgT120I	GGNCC	4 cut(s)	297, 366, 372, 823
BmiI	GGNNCC	2 cut(s)	120, 425
BmrFI	CCNGG	4 cut(s)	301, 364, 370, 382
BmsI	GCATC	4 cut(s)	3, 164, 231, 727
BpiI	GAAGAC	2 cut(s)	46, 583
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	606
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	363, 369, 375, 381
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 369, 381, 387
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	4 cut(s)	301, 364, 370, 382
BseDI	CCNNGG	4 cut(s)	363, 369, 375, 381
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	4 cut(s)	316, 369, 381, 387
BseMII	CTCAG	1 cut(s)	620
BseRI	GAGGAG	1 cut(s)	746
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	613, 745
BseYI	CCCAGC	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	7 cut(s)	5, 30, 299, 340, 368, 374, 380
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	2 cut(s)	114, 728
BsiSI	CCGG	2 cut(s)	31, 128
BslI	CCNNNNNNNGG	4 cut(s)	316, 369, 381, 387
BsmAI	GTCTC	1 cut(s)	875
BsnI	GGCC	7 cut(s)	5, 30, 299, 340, 368, 374, 380
BsoBI	CYCGRG	2 cut(s)	114, 728
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	5 cut(s)	76, 124, 130, 346, 408
BspACI	CCGC	3 cut(s)	27, 239, 256
BspANI	GGCC	7 cut(s)	5, 30, 299, 340, 368, 374, 380
BspCNI	CTCAG	1 cut(s)	619
BspEI	TCCGGA	1 cut(s)	127
BspHI	TCATGA	2 cut(s)	343, 403
BspLI	GGNNCC	2 cut(s)	120, 425
BspPI	GGATC	3 cut(s)	84, 119, 138
BssECI	CCNNGG	4 cut(s)	363, 369, 375, 381
BssMI	GATC	5 cut(s)	76, 124, 130, 346, 408
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	4 cut(s)	301, 364, 370, 382
Bst4CI	ACNGT	2 cut(s)	182, 771
BstACI	GRCGYC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	805
BstDEI	CTNAG	1 cut(s)	606
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	5 cut(s)	79, 127, 133, 349, 411
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	5 cut(s)	76, 124, 130, 346, 408
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 296, 607
BstNI	CCWGG	4 cut(s)	301, 364, 370, 382
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	4 cut(s)	299, 362, 368, 380
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	613, 745
BstV2I	GAAGAC	2 cut(s)	46, 583
BstX2I	RGATCY	2 cut(s)	124, 130
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	2 cut(s)	124, 130
BstZI	CGGCCG	1 cut(s)	28
BsuRI	GGCC	7 cut(s)	5, 30, 299, 340, 368, 374, 380
BtgZI	GCGATG	1 cut(s)	797
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	187, 356
Cac8I	GCNNGC	1 cut(s)	805
CaiI	CAGNNNCTG	1 cut(s)	775
CciI	TCATGA	2 cut(s)	343, 403
Cfr13I	GGNCC	4 cut(s)	297, 366, 372, 823
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	6 cut(s)	49, 344, 404, 644, 679, 808
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	5 cut(s)	78, 126, 132, 348, 410
DpnII	GATC	5 cut(s)	76, 124, 130, 346, 408
DrdI	GACNNNNNNGTC	1 cut(s)	796
DriI	GACNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	796
EaeI	YGGCCR	2 cut(s)	3, 28
EagI	CGGCCG	1 cut(s)	28
Eam1105I	GACNNNNNGTC	1 cut(s)	821
EclXI	CGGCCG	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	823
Eco52I	CGGCCG	1 cut(s)	28
Eco72I	CACGTG	1 cut(s)	19
Eco88I	CYCGRG	2 cut(s)	114, 728
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	4 cut(s)	299, 362, 368, 380
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	6 cut(s)	52, 347, 407, 647, 682, 811
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	6 cut(s)	48, 343, 403, 643, 678, 807
FauNDI	CATATG	1 cut(s)	690
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	28, 240, 257, 602, 734
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	5 cut(s)	28, 240, 257, 602, 734
FspBI	CTAG	2 cut(s)	134, 321
GluI	GCNGC	5 cut(s)	28, 240, 257, 602, 734
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	7 cut(s)	5, 30, 299, 340, 368, 374, 380
HapII	CCGG	2 cut(s)	31, 128
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	52, 347, 407, 647, 682, 811
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	2 cut(s)	31, 128
HphI	GGTGA	2 cut(s)	464, 531
Hpy166II	GTNNAC	3 cut(s)	354, 441, 815
Hpy188I	TCNGA	1 cut(s)	745
Hpy188III	TCNNGA	9 cut(s)	106, 122, 128, 145, 268, 344, 404, 412, 460
Hpy8I	GTNNAC	3 cut(s)	354, 441, 815
Hpy99I	CGWCG	2 cut(s)	247, 793
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	182, 771
HpyCH4IV	ACGT	2 cut(s)	18, 245
HpyCH4V	TGCA	4 cut(s)	16, 643, 701, 807
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 296, 607
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	2 cut(s)	18, 245
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	6 cut(s)	52, 347, 407, 647, 682, 811
Kpn2I	TCCGGA	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	76, 124, 130, 346, 408
LmnI	GCTCC	2 cut(s)	87, 124
Lsp1109I	GCAGC	2 cut(s)	613, 745
LweI	GCATC	4 cut(s)	3, 164, 231, 727
MaeI	CTAG	2 cut(s)	134, 321
MaeII	ACGT	2 cut(s)	18, 245
MaeIII	GTNAC	4 cut(s)	142, 246, 395, 470
MalI	GATC	5 cut(s)	78, 126, 132, 348, 410
MboI	GATC	5 cut(s)	76, 124, 130, 346, 408
MboII	GAAGA	3 cut(s)	51, 583, 658
MflI	RGATCY	2 cut(s)	124, 130
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	2 cut(s)	31, 128
MspR9I	CCNGG	4 cut(s)	301, 364, 370, 382
MvaI	CCWGG	4 cut(s)	301, 364, 370, 382
MwoI	GCNNNNNNNGC	3 cut(s)	183, 296, 607
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	5 cut(s)	76, 124, 130, 346, 408
NlaIII	CATG	6 cut(s)	52, 347, 407, 647, 682, 811
NlaIV	GGNNCC	2 cut(s)	120, 425
NmeAIII	GCCGAG	2 cut(s)	31, 577
NmuCI	GTSAC	4 cut(s)	142, 246, 395, 470
PagI	TCATGA	2 cut(s)	343, 403
PflFI	GACNNNGTC	1 cut(s)	796
PkrI	GCNGC	5 cut(s)	29, 241, 258, 603, 735
PleI	GAGTC	1 cut(s)	412
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	4 cut(s)	299, 362, 368, 380
PspCI	CACGTG	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	4 cut(s)	299, 362, 368, 380
PspN4I	GGNNCC	2 cut(s)	120, 425
PspPI	GGNCC	4 cut(s)	297, 366, 372, 823
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	2 cut(s)	124, 130
PsyI	GACNNNGTC	1 cut(s)	796
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	434
SatI	GCNGC	5 cut(s)	28, 240, 257, 602, 734
Sau3AI	GATC	5 cut(s)	76, 124, 130, 346, 408
Sau96I	GGNCC	4 cut(s)	297, 366, 372, 823
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	4 cut(s)	301, 364, 370, 382
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	4 cut(s)	3, 164, 231, 727
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	27, 239, 256
SspMI	CTAG	2 cut(s)	134, 321
StyD4I	CCNGG	4 cut(s)	299, 362, 368, 380
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	182, 771
TaiI	ACGT	2 cut(s)	21, 248
TaqI	TCGA	3 cut(s)	68, 231, 267
TaqII	GACCGA	2 cut(s)	577, 811
TasI	AATT	1 cut(s)	44
TauI	GCSGC	3 cut(s)	30, 242, 259
TscAI	CASTG	2 cut(s)	187, 356
TseFI	GTSAC	4 cut(s)	142, 246, 395, 470
TseI	GCWGC	2 cut(s)	601, 733
Tsp45I	GTSAC	4 cut(s)	142, 246, 395, 470
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	187, 356
Tth111I	GACNNNGTC	1 cut(s)	796
VpaK11BI	GGWCC	1 cut(s)	823
XspI	CTAG	2 cut(s)	134, 321
ZraI	GACGTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.