Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Forward (+)

4107372 .. 4116262

Gene Structure 8891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATCCCTTTTATCCCGAATTCAATTTTGACCAATTTGCACGCTCCTATAAATACACAGTTGAGCTTAATTCGTAGGGACCAAGTATCAGTTGGAATGATGAACTATGAAGCAATCACACCTTTGACTCAAGAAAAAAAAATATATACATTCAGGTCAGGGTTTGACAGTTTTCGATCTGGATGGGTAGCGTACGGGGTCTTACAAAGGCTTCATGGGCCAGGGCTTTGTAATCCGCTAGCCCATGTCACCCTTGTGGTGTATTTTTATCCCTATGTGGATTATTCTGGCTTGGTCCAACATGGGAGGACTCGGTTCCTCATACCGGTGTCAATCGGTCCTAATTCTTTCCAGATATTTGGTCACCCAACTCCAAAACAACCCATCAACTACCATTGTGTACCTTCATGTGAACTTGTGTGGCTGCACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

9.12

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	2 cut(s)	194, 402
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	1 cut(s)	19
AsiGI	ACCGGT	1 cut(s)	325
AspS9I	GGNCC	4 cut(s)	79, 218, 295, 338
AsuHPI	GGTGA	2 cut(s)	241, 356
AsuNHI	GCTAGC	1 cut(s)	238
AvaII	GGWCC	3 cut(s)	79, 295, 338
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	2 cut(s)	177, 392
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	3 cut(s)	79, 295, 338
BmgT120I	GGNCC	4 cut(s)	79, 218, 295, 338
BmiI	GGNNCC	2 cut(s)	80, 317
BmrFI	CCNGG	1 cut(s)	222
BmtI	GCTAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse118I	RCCGGY	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	326
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	3, 176
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	80, 317
BspOI	GCTAGC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	3, 176
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	60, 170
BstC8I	GCNNGC	3 cut(s)	42, 240, 429
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	6, 179
BstMBI	GATC	2 cut(s)	3, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	42, 240, 429
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	4 cut(s)	79, 218, 295, 338
Csp6I	GTAC	2 cut(s)	193, 401
CspAI	ACCGGT	1 cut(s)	325
CviAII	CATG	4 cut(s)	215, 245, 302, 408
CviJI	RGCY	7 cut(s)	66, 211, 220, 226, 242, 291, 424
CviKI_1	RGCY	7 cut(s)	66, 211, 220, 226, 242, 291, 424
CviQI	GTAC	2 cut(s)	193, 401
DpnI	GATC	2 cut(s)	5, 178
DpnII	GATC	2 cut(s)	3, 176
Eco47I	GGWCC	3 cut(s)	79, 295, 338
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	218, 248, 305, 411
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	4 cut(s)	214, 244, 301, 407
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	4 cut(s)	218, 248, 305, 411
HinfI	GANTC	2 cut(s)	127, 310
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	2 cut(s)	241, 356
Hpy166II	GTNNAC	2 cut(s)	401, 413
Hpy188III	TCNNGA	4 cut(s)	16, 131, 180, 352
Hpy8I	GTNNAC	2 cut(s)	401, 413
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	2 cut(s)	60, 170
HpyCH4V	TGCA	2 cut(s)	40, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	218, 248, 305, 411
Kzo9I	GATC	2 cut(s)	3, 176
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	8 cut(s)	139, 144, 165, 207, 234, 273, 339, 365
Lsp1109I	GCAGC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	247, 362
MalI	GATC	2 cut(s)	5, 178
MboI	GATC	2 cut(s)	3, 176
MluCI	AATT	5 cut(s)	19, 24, 34, 69, 343
MlyI	GAGTC	2 cut(s)	121, 304
MmeI	TCCRAC	2 cut(s)	73, 322
MnlI	CCTC	2 cut(s)	300, 329
MseI	TTAA	2 cut(s)	68, 433
MslI	CAYNNNNRTG	2 cut(s)	254, 326
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	3, 176
NheI	GCTAGC	1 cut(s)	238
NlaIII	CATG	4 cut(s)	218, 248, 305, 411
NlaIV	GGNNCC	2 cut(s)	80, 317
NmuCI	GTSAC	2 cut(s)	247, 362
OliI	CACNNNNGTG	1 cut(s)	254
Pfl23II	CGTACG	1 cut(s)	192
PinAI	ACCGGT	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	426
PleI	GAGTC	2 cut(s)	121, 304
PpsI	GAGTC	2 cut(s)	121, 304
Psp6I	CCWGG	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	220
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	80, 317
PspPI	GGNCC	4 cut(s)	79, 218, 295, 338
RsaI	GTAC	2 cut(s)	194, 402
RsaNI	GTAC	2 cut(s)	193, 401
RseI	CAYNNNNRTG	2 cut(s)	254, 326
SaqAI	TTAA	2 cut(s)	68, 433
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	2 cut(s)	3, 176
Sau96I	GGNCC	4 cut(s)	79, 218, 295, 338
SchI	GAGTC	2 cut(s)	121, 304
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	4 cut(s)	68, 124, 158, 406
SinI	GGWCC	3 cut(s)	79, 295, 338
SmiMI	CAYNNNNRTG	2 cut(s)	254, 326
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	5 cut(s)	19, 24, 34, 69, 343
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	60, 170
TaqI	TCGA	1 cut(s)	175
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	19, 24, 34, 69, 343
Tru1I	TTAA	2 cut(s)	68, 433
Tru9I	TTAA	2 cut(s)	68, 433
TseFI	GTSAC	2 cut(s)	247, 362
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	2 cut(s)	247, 362
TspDTI	ATGAA	4 cut(s)	116, 123, 203, 396
VpaK11BI	GGWCC	3 cut(s)	79, 295, 338
XapI	RAATTY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.