Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Reverse (-)

13207789 .. 13212000

Gene Structure 4212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGGGCTTACGAAGATCTTCACGAGTGGAGAACTGGCGGTGACCAGTGGGTTTGTTCTTGTACTTTCCCCTGCCCATCGTTTCCCAACAAATTCAAAGGCAGCGAAATTCCTCTTCAGAGACGATCAATTTTTGAAGAGGAATGTAAGGGAATCCAATCCATCTTAATCTGCCTCATCGGCACAATATCCTGCTCTTCTCTCTACACCGACCTAATCCCAATCTCCATCGACGGCAACCGAGACGCCACCGCCGCCAACGACGTCGAGATCAGCACTGGCATCAACGACGAAGAAGTGGAGAAGCTTACAAAGATGACCGGTGTAGAAGCAACAAATCTAGATGAGTGGCCGCGTCATCTCGAACGGAAGCGGATTTTGGAGCGAGTCCGTCACCGGCAACAACTTCGACATCATGGCGGTGGTGACTATTGTGATCATCATCGGGACCTCACTCTCTTCACTCCCTCCTCTCCTTCTTCTTCGCTCTACCTTTGGTCTACGTCCCAAGACGAGCACGCGGGTCGAGCACGCAGATCTGGGTCGGTGGAGAAGGGGCTGGGTGGCCGGCGAAGGCACTGGGTGGCCGGCGAAGGAGTATGCAGATCTAAGCACGCAAATCAAAATCGCCAAATGGAGGAATTAAATCTCCACTGCTCCGACTGTCATGGCCGCCGACCGCCATCGTCAAGGTCAAGCGATCGCCGCCCGCTCACCTTCCCTTCGTCGAGGTTGTTTGATCTCGGTTGTAAGATATTGGGGTTGTTTGGGGTTGATTGGATTTGGGTTGTAAGAAGTTGGAGTCGGAGGTGGTGTAGGAGGCGGCAGCGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

32.03

Weight (kDa)

8.98

Isoelectric Point (pI)

79.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	2 cut(s)	355, 521
AcoI	YGGCCR	4 cut(s)	350, 565, 585, 670
AcsI	RAATTY	2 cut(s)	92, 108
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	246, 264
AdeI	CACNNNGTG	1 cut(s)	583
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	637
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	97, 137
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw21I	GWGCWC	2 cut(s)	519, 532
Alw26I	GTCTC	2 cut(s)	115, 237
AoxI	GGCC	4 cut(s)	350, 565, 585, 670
ApeKI	GCWGC	2 cut(s)	102, 826
ApoI	RAATTY	2 cut(s)	92, 108
AsiGI	ACCGGT	1 cut(s)	320
AsiSI	GCGATCGC	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	4 cut(s)	53, 386, 437, 706
AvaII	GGWCC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	519, 532
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	4 cut(s)	85, 170, 236, 691
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	4 cut(s)	389, 423, 506, 540
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	115, 237
BfaI	CTAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	180
BglII	AGATCT	3 cut(s)	16, 536, 605
BisI	GCNGC	7 cut(s)	103, 255, 353, 673, 706, 824, 827
BlsI	GCNGC	7 cut(s)	104, 256, 354, 674, 707, 825, 828
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	2 cut(s)	246, 264
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse118I	RCCGGY	4 cut(s)	320, 396, 567, 587
Bse1I	ACTGG	4 cut(s)	40, 46, 283, 584
Bse8I	GATNNNNATC	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseNI	ACTGG	4 cut(s)	40, 46, 283, 584
BseRI	GAGGAG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	355, 521
Bsh1285I	CGRYCG	2 cut(s)	680, 703
BshFI	GGCC	4 cut(s)	352, 567, 587, 672
BshTI	ACCGGT	1 cut(s)	320
BsiEI	CGRYCG	2 cut(s)	680, 703
BsiHKAI	GWGCWC	2 cut(s)	519, 532
BsiSI	CCGG	4 cut(s)	321, 397, 568, 588
BslFI	GGGAC	2 cut(s)	461, 490
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	2 cut(s)	115, 237
BsmBI	CGTCTC	2 cut(s)	115, 237
BsmFI	GGGAC	2 cut(s)	461, 490
BsnI	GGCC	4 cut(s)	352, 567, 587, 672
Bsp1286I	GDGCHC	2 cut(s)	519, 532
Bsp143I	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
BspANI	GGCC	4 cut(s)	352, 567, 587, 672
BspFNI	CGCG	2 cut(s)	355, 521
BspLI	GGNNCC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	712
BsrFI	RCCGGY	4 cut(s)	320, 396, 567, 587
BsrI	ACTGG	4 cut(s)	40, 46, 283, 584
BssAI	RCCGGY	4 cut(s)	320, 396, 567, 587
BssMI	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
BssNI	GRCGYC	2 cut(s)	246, 264
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	4 cut(s)	120, 132, 202, 464
BstACI	GRCGYC	2 cut(s)	246, 264
BstC8I	GCNNGC	6 cut(s)	519, 532, 569, 589, 615, 710
BstDEI	CTNAG	1 cut(s)	609
BstEII	GGTNACC	1 cut(s)	41
BstFNI	CGCG	2 cut(s)	355, 521
BstKTI	GATC	8 cut(s)	19, 128, 273, 439, 539, 608, 703, 742
BstMAI	GTCTC	2 cut(s)	115, 237
BstMBI	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
BstMCI	CGRYCG	2 cut(s)	680, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 254, 527, 705
BstPI	GGTNACC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	355, 521
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	16, 536, 605
BstYI	RGATCY	3 cut(s)	16, 536, 605
BsuRI	GGCC	4 cut(s)	352, 567, 587, 672
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	4 cut(s)	53, 276, 577, 652
Cac8I	GCNNGC	6 cut(s)	519, 532, 569, 589, 615, 710
Cfr10I	RCCGGY	4 cut(s)	320, 396, 567, 587
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	2 cut(s)	254, 344
Csp6I	GTAC	1 cut(s)	63
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	2 cut(s)	416, 668
CviJI	RGCY	7 cut(s)	8, 307, 352, 559, 567, 587, 672
CviKI_1	RGCY	7 cut(s)	8, 307, 352, 559, 567, 587, 672
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	8 cut(s)	18, 127, 272, 438, 538, 607, 702, 741
DpnII	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
DraIII	CACNNNGTG	1 cut(s)	583
EaeI	YGGCCR	4 cut(s)	350, 565, 585, 670
Eam1104I	CTCTTC	4 cut(s)	120, 132, 202, 464
EarI	CTCTTC	4 cut(s)	120, 132, 202, 464
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	41
Esp3I	CGTCTC	2 cut(s)	115, 237
FaeI	CATG	2 cut(s)	419, 671
FaiI	YATR	3 cut(s)	417, 601, 669
FaqI	GGGAC	2 cut(s)	461, 490
FatI	CATG	2 cut(s)	415, 667
FauI	CCCGC	2 cut(s)	514, 717
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	7 cut(s)	103, 255, 353, 673, 706, 824, 827
Fsp4HI	GCNGC	7 cut(s)	103, 255, 353, 673, 706, 824, 827
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	7 cut(s)	103, 255, 353, 673, 706, 824, 827
GsaI	CCCAGC	1 cut(s)	563
HaeIII	GGCC	4 cut(s)	352, 567, 587, 672
HapII	CCGG	4 cut(s)	321, 397, 568, 588
HgaI	GACGC	2 cut(s)	254, 344
Hin1I	GRCGYC	2 cut(s)	246, 264
Hin1II	CATG	2 cut(s)	419, 671
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	153, 387, 802
HpaII	CCGG	4 cut(s)	321, 397, 568, 588
HphI	GGTGA	4 cut(s)	53, 386, 437, 706
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	3 cut(s)	120, 661, 807
Hpy188III	TCNNGA	5 cut(s)	23, 268, 341, 362, 446
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	5 cut(s)	236, 266, 269, 293, 730
HpyAV	CCTTC	6 cut(s)	486, 547, 567, 587, 727, 732
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	2 cut(s)	264, 503
HpyCH4V	TGCA	1 cut(s)	603
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 254, 527, 705
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	2 cut(s)	264, 503
Hsp92I	GRCGYC	2 cut(s)	246, 264
Hsp92II	CATG	2 cut(s)	419, 671
KroI	GCCGGC	2 cut(s)	567, 587
KroNI	GCCGGC	2 cut(s)	569, 589
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	382, 662
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	264, 503
MaeIII	GTNAC	3 cut(s)	41, 392, 425
MalI	GATC	8 cut(s)	18, 127, 272, 438, 538, 607, 702, 741
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
MboII	GAAGA	9 cut(s)	11, 26, 107, 149, 189, 305, 451, 471, 474
MflI	RGATCY	3 cut(s)	16, 536, 605
MhlI	GDGCHC	2 cut(s)	519, 532
MluCI	AATT	4 cut(s)	92, 108, 129, 641
MlyI	GAGTC	2 cut(s)	396, 811
MmeI	TCCRAC	3 cut(s)	684, 779, 785
MroNI	GCCGGC	2 cut(s)	567, 587
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	167, 644
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	829
MspI	CCGG	4 cut(s)	321, 397, 568, 588
MvnI	CGCG	2 cut(s)	355, 521
MwoI	GCNNNNNNNGC	4 cut(s)	180, 254, 527, 705
NaeI	GCCGGC	2 cut(s)	569, 589
NdeII	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
NgoMIV	GCCGGC	2 cut(s)	567, 587
NlaIII	CATG	2 cut(s)	419, 671
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	3 cut(s)	41, 392, 425
PciSI	GCTCTTC	1 cut(s)	202
PdiI	GCCGGC	2 cut(s)	569, 589
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	7 cut(s)	104, 256, 354, 674, 707, 825, 828
Ple19I	CGATCG	1 cut(s)	703
PleI	GAGTC	2 cut(s)	395, 810
PpsI	GAGTC	2 cut(s)	395, 810
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
PspEI	GGTNACC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	3 cut(s)	16, 536, 605
PvuI	CGATCG	1 cut(s)	703
RgaI	GCGATCGC	1 cut(s)	703
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	167, 644
SatI	GCNGC	7 cut(s)	103, 255, 353, 673, 706, 824, 827
Sau3AI	GATC	8 cut(s)	16, 125, 270, 436, 536, 605, 700, 739
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	2 cut(s)	396, 811
SduI	GDGCHC	2 cut(s)	519, 532
SfaAI	GCGATCGC	1 cut(s)	703
SfaNI	GCATC	1 cut(s)	291
SgfI	GCGATCGC	1 cut(s)	703
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	92, 108, 129, 641
SspMI	CTAG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	2 cut(s)	267, 506
TaqI	TCGA	6 cut(s)	231, 267, 363, 409, 526, 728
TasI	AATT	4 cut(s)	92, 108, 129, 641
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	5 cut(s)	257, 355, 675, 708, 826
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	167, 644
Tru9I	TTAA	2 cut(s)	167, 644
TscAI	CASTG	4 cut(s)	53, 283, 584, 659
TseFI	GTSAC	3 cut(s)	41, 392, 425
TseI	GCWGC	2 cut(s)	102, 826
Tsp45I	GTSAC	3 cut(s)	41, 392, 425
TspGWI	ACGGA	2 cut(s)	380, 382
TspRI	CASTG	4 cut(s)	53, 283, 584, 659
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	92, 108
XbaI	TCTAGA	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	341
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.