Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Forward (+)

21612905 .. 21615151

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTATCGCCATTTTGTCTTCTCCTGTCCGAAGGACAGCATCATTCAGAAAACAATTTTCACAGAATGAGTTAGGTAGCTGGTCAACGCTCCTTCAAAGGCATCGCTTCCTCTTAACAGCCCTCGTCCTCCTGACTTTCCTCTGCACTGTTTATCTTTACTTTGCTGTCACTTTAGGAGCCAATGAGTCATGTTCTGGGATGAGTGGAACTGAAAAAGCGTTATACTTGGTCACCCAACACCAAAACAACTCGTCAACTACCATTGTAAACCGTCATGAGAGCTTGTGTGTCTGTACGCTTAAAGTGCAGTTTGACACTTACCTATCGGATTATGGGTGCTCACGCGTGGGTTTATCACCCCCCATTTTCTTTGGTTCTGGGATATGGTTTTCGGTCTTCTCCTGGCAGCCTCAGCTTTATCATGGCTTTGGTTTAAATGGTGGATTGCATGGTGTTGTTTTGAGGGAGTTCTTCCTCTTAGTCATGGGTTTCCATATGATCTGTGCATTGAGATTCGGTAAGCATCGGGTACTCGGGCAACTATGCTCTGATTTAGCACTCCTCACTTACTCACAGCTGTTGGCGGCGACGACAATGTCAGCGTGCATGGGTGGACTTTCGGTCCATAGATTAGCGAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.8

Weight (kDa)

9.07

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	598
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	587
AfaI	GTAC	2 cut(s)	298, 534
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	98
AhdI	GACNNNNNGTC	1 cut(s)	623
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	5 cut(s)	81, 285, 418, 580, 642
AluI	AGCT	5 cut(s)	81, 285, 418, 580, 642
Alw21I	GWGCWC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	226, 351
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	625
BbsI	GAAGAC	2 cut(s)	12, 391
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	406
BisI	GCNGC	2 cut(s)	410, 588
BlsI	GCNGC	2 cut(s)	411, 589
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	625
BmeRI	GACNNNNNGTC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	50, 112, 535
BpiI	GAAGAC	2 cut(s)	12, 391
Bpu10I	CCTNAGC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	421
BsgI	GTGCAG	2 cut(s)	130, 329
Bsh1236I	CGCG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	501
BspACI	CCGC	1 cut(s)	587
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	181
BssMI	GATC	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	151, 275
BstC8I	GCNNGC	2 cut(s)	607, 640
BstDEI	CTNAG	2 cut(s)	414, 481
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	504
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 415
BstNI	CCWGG	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	404
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	2 cut(s)	12, 391
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	607, 640
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	297, 533
CviAII	CATG	6 cut(s)	192, 278, 425, 452, 487, 610
CviQI	GTAC	2 cut(s)	297, 533
DdeI	CTNAG	2 cut(s)	414, 481
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
DraI	TTTAAA	1 cut(s)	438
DrdI	GACNNNNNNGTC	1 cut(s)	598
DriI	GACNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	598
Eam1105I	GACNNNNNGTC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	404
FaeI	CATG	6 cut(s)	195, 281, 428, 455, 490, 613
FatI	CATG	6 cut(s)	191, 277, 424, 451, 486, 609
FauNDI	CATATG	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	410, 588
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	2 cut(s)	410, 588
GluI	GCNGC	2 cut(s)	410, 588
Hin1II	CATG	6 cut(s)	195, 281, 428, 455, 490, 613
HincII	GTYRAC	2 cut(s)	87, 258
HindII	GTYRAC	2 cut(s)	87, 258
HinfI	GANTC	2 cut(s)	188, 516
HphI	GGTGA	2 cut(s)	226, 351
Hpy166II	GTNNAC	4 cut(s)	87, 258, 271, 617
Hpy188I	TCNGA	4 cut(s)	32, 50, 331, 553
Hpy188III	TCNNGA	2 cut(s)	133, 278
Hpy8I	GTNNAC	4 cut(s)	87, 258, 271, 617
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	27, 104
HpyCH4III	ACNGT	2 cut(s)	151, 275
HpyCH4V	TGCA	5 cut(s)	147, 310, 451, 509, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 415
HpyF3I	CTNAG	2 cut(s)	414, 481
Hsp92II	CATG	6 cut(s)	195, 281, 428, 455, 490, 613
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	2 cut(s)	96, 179
LpnPI	CCDG	7 cut(s)	39, 67, 146, 183, 366, 391, 418
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	3 cut(s)	50, 112, 535
MaeIII	GTNAC	2 cut(s)	169, 232
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	3 cut(s)	12, 391, 466
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	56
MluI	ACGCGT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	8 cut(s)	122, 134, 140, 152, 423, 459, 488, 575
MseI	TTAA	3 cut(s)	116, 303, 437
MspA1I	CMGCKG	1 cut(s)	580
MspR9I	CCNGG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	307, 415
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	6 cut(s)	195, 281, 428, 455, 490, 613
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	169, 232
PagI	TCATGA	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	516
PflFI	GACNNNGTC	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	411, 589
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	404
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	298, 534
RsaNI	GTAC	2 cut(s)	297, 533
SaqAI	TTAA	3 cut(s)	116, 303, 437
SatI	GCNGC	2 cut(s)	410, 588
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	7 cut(s)	79, 83, 287, 327, 420, 582, 644
SfaNI	GCATC	3 cut(s)	50, 112, 535
SinI	GGWCC	1 cut(s)	625
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	151, 275
TaqII	GACCGA	2 cut(s)	385, 613
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	3 cut(s)	116, 303, 437
Tru9I	TTAA	3 cut(s)	116, 303, 437
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	169, 232
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	2 cut(s)	169, 232
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.