Rw2G028750

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
46181093 .. 46184477
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028750.1

Sequence Viewer

Length: 285 bp
ATGGTTATTGACAGCATTTTGTCTTCTCCTGTTCGAAGGACAGCATCATTCAGAAAACAATTTTCACAGAATGAGTTAGGTAGCTGGTCAACGCTCCTTCAAAGGCACCGATTCCTATTAACAGCCCTCGTTCTCCTGACATTCCTCTGCACTGTGTATCTTTACTTTGCTGTCACTTTAGGAGCCAATGGGTCATGTTCTGGGATGAGTGGAACTGAAAAGGCATTGTGTCATTTGGAGCATGCTAAGACTTCAGTTTCCCATGGAAAATTGAAATTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

9.73

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 2 cut(s) 101, 274
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
ApoI RAATTY 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 107, 184
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 107, 184
BspT104I TTCGAA 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 243
CviAII CATG 3 cut(s) 195, 242, 263
CviJI RGCY 3 cut(s) 84, 125, 185
CviKI_1 RGCY 3 cut(s) 84, 125, 185
DdeI CTNAG 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 198, 245, 266
FaiI YATR 3 cut(s) 196, 243, 264
FatI CATG 3 cut(s) 194, 241, 262
FokI GGATG 1 cut(s) 217
Hin1II CATG 3 cut(s) 198, 245, 266
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 30, 107
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 3 cut(s) 198, 245, 266
LmnI GCTCC 3 cut(s) 99, 182, 238
LpnPI CCDG 4 cut(s) 42, 70, 149, 186
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 1 cut(s) 15
MluCI AATT 3 cut(s) 59, 269, 275
MnlI CCTC 2 cut(s) 137, 155
MseI TTAA 1 cut(s) 119
NcoI CCATGG 1 cut(s) 262
NlaIII CATG 3 cut(s) 198, 245, 266
NlaIV GGNNCC 2 cut(s) 107, 184
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 245
NspV TTCGAA 1 cut(s) 34
PaeI GCATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 107, 184
SaqAI TTAA 1 cut(s) 119
SetI ASST 2 cut(s) 82, 86
SfaNI GCATC 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 34
SgeI CNNG 8 cut(s) 41, 97, 140, 148, 207, 213, 254, 275
SphI GCATGC 1 cut(s) 245
Sse9I AATT 3 cut(s) 59, 269, 275
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 34
TasI AATT 3 cut(s) 59, 269, 275
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.