Rroxscaffold_2G00112450

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
37627363 .. 37635295
7933 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00112450.1

Sequence Viewer

Length: 366 bp
ATGGTTGCTTTGTCACCTGCCATTTTGACCAAAAGTTTGTGCTTTACTTCAGGTTGTCTGAGGAAGGTCAGTACATACACCATGGTTATCGACAGCATTTTGTCTTCTCCTGTCCGAAGGACAGCATCATTCAGAAAACAATTTTCACAGAATGAGTTAGGTAGCTGGTCAACGCTCCTTCAAAGGCACCGATTCCTCTTAACAGCCCTCGTTCTCCTGACATTCCTCTGCACTGTTTATCTTTACTTTGCTGTCACTTTAGGAGCCAATGGGTCATGTTCTGGGATGAGTGGAACTGAAAAGGCATTGTGTCATTTGGAGCATGCTAAGACTTCAGTTTCCCATGGAAAATTGAAATTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.33

Weight (kDa)

9.77

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 2 cut(s) 33, 318
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 182, 355
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
ApoI RAATTY 1 cut(s) 356
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AsuHPI GGTGA 1 cut(s) 6
BanI GGYRCC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 188, 265
BmsI GCATC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 81, 343
BseDI CCNNGG 2 cut(s) 81, 343
BseGI GGATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 186
Bsp19I CCATGG 2 cut(s) 81, 343
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 188, 265
BspMI ACCTGC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 81, 343
BssT1I CCWWGG 2 cut(s) 81, 343
Bst4CI ACNGT 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 59, 327
BstDSI CCRYGG 2 cut(s) 81, 343
BstF5I GGATG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 96
BtgI CCRYGG 2 cut(s) 81, 343
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 72
CviAII CATG 4 cut(s) 82, 276, 323, 344
CviJI RGCY 3 cut(s) 165, 206, 266
CviKI_1 RGCY 3 cut(s) 165, 206, 266
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 2 cut(s) 59, 327
Eco130I CCWWGG 2 cut(s) 81, 343
Eco57I CTGAAG 2 cut(s) 33, 318
EcoT14I CCWWGG 2 cut(s) 81, 343
ErhI CCWWGG 2 cut(s) 81, 343
FaeI CATG 4 cut(s) 85, 279, 326, 347
FaiI YATR 5 cut(s) 76, 83, 277, 324, 345
FatI CATG 4 cut(s) 81, 275, 322, 343
FokI GGATG 1 cut(s) 298
Hin1II CATG 4 cut(s) 85, 279, 326, 347
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 1 cut(s) 192
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 3 cut(s) 60, 116, 134
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 58, 111, 188
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 231
HpyF3I CTNAG 2 cut(s) 59, 327
Hsp92II CATG 4 cut(s) 85, 279, 326, 347
LmnI GCTCC 3 cut(s) 180, 263, 319
LpnPI CCDG 6 cut(s) 30, 36, 123, 151, 230, 267
LweI GCATC 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 12, 253
MboII GAAGA 1 cut(s) 96
MluCI AATT 3 cut(s) 140, 350, 356
MnlI CCTC 4 cut(s) 54, 206, 218, 236
MseI TTAA 1 cut(s) 200
NcoI CCATGG 2 cut(s) 81, 343
NlaIII CATG 4 cut(s) 85, 279, 326, 347
NlaIV GGNNCC 2 cut(s) 188, 265
NmuCI GTSAC 2 cut(s) 12, 253
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PaqCI CACCTGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 188, 265
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 200
SetI ASST 5 cut(s) 19, 55, 69, 163, 167
SfaNI GCATC 1 cut(s) 134
SphI GCATGC 1 cut(s) 326
Sse9I AATT 3 cut(s) 140, 350, 356
StyI CCWWGG 2 cut(s) 81, 343
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 140, 350, 356
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 12, 253
Tsp45I GTSAC 2 cut(s) 12, 253
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.