Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008697

Physical Location & Seq

Genomic Coordinates Forward (+)

25185147 .. 25187427

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31262.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACTCTCTCCTCTCTTCTTCACTCTCTTCTCTCCCTCTTCTCCTCTCTCTCCTCTCTTCTCCCCTAGTTTCCACGCACCGACAGAGACCCCTAGACTCTAGCTCTCCCTCTGCCTTTCCTTCTTCTTCGCTCTCCCTCTTCGTCCCAAGACCAGCAAGCGGGTCAGGCAAGCAGATCTGGGTCGCTGGCGAAGGGGCTCGGTTGCCGGTGAAAGAGTATGCAGATCTCAACCGCTCCGACTGTCATGGCCGCCGACCGCCATCGTCAAGGCCAAGCGATCGCCGCCCGCTCACTTCGCTTCGTCGAGATGACTCGGTTGAAATTGGGTTGCTTGATCTCGGTTGTAAGATATTGGGGTTGATTGGATTTGAATTGGCTACCGCCACTAATTATGTCAACCAATCCGGACCGATGTGTCCAACCACCACCATAGCATTCCACCTCTATCGGAACAATCTATTCTTCACCGACGCTAGCCAGCCTTCATCCCACCTCGAGTTTAGGCCACGAAGACCGTCGCCTGAAGCCAAATCCAAAAACGTTGCAAAACTGCATACAACGATTAATATTGAGATAGGAGAGCAAAGCTGGAGGGAGAGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.19

Weight (kDa)

9.77

Isoelectric Point (pI)

76.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16170 AT1G79660
fragaria_vesca	FvH4_3g06990 FvH4_3g18101 FvH4_3g31262 FvH4_5g21860 FvH4_6g28090 FvH4_7g04072 FvH4_7g18240
malus_domestica	MD09G1229400.v1.1 MD17G1228300.v1.1
prunus_persica	Prupe.3G105500_v2.0.a1 Prupe.3G105500_v2.0.a1
pyrus_communis	pycom09g14810 pycom17g23090
rosa_chinensis	RchiOBHm_Chr2g0131951
rosa_multiflora	Rmu_sc0000584.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112450
rosa_rugosa	Rorug02G0301300
rosa_samantha	Rh2AG352600 Rh2CG338200 Rh2DG377100
rosa_wichuraiana	Rw2G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	417
AccBSI	CCGCTC	2 cut(s)	237, 292
AccIII	TCCGGA	1 cut(s)	407
AciI	CCGC	7 cut(s)	162, 235, 253, 260, 286, 290, 384
AclI	AACGTT	1 cut(s)	543
AcoI	YGGCCR	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	323, 374
AluBI	AGCT	2 cut(s)	105, 591
AluI	AGCT	2 cut(s)	105, 591
Alw26I	GTCTC	2 cut(s)	82, 595
Ama87I	CYCGRG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	3 cut(s)	250, 272, 506
AseI	ATTAAT	1 cut(s)	567
AsiSI	GCGATCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	223, 460
AsuNHI	GCTAGC	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	520
BccI	CCATC	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	82, 595
BfaI	CTAG	4 cut(s)	68, 95, 102, 477
BfmI	CTRYAG	1 cut(s)	605
BglII	AGATCT	2 cut(s)	177, 226
BisI	GCNGC	2 cut(s)	253, 286
BlsI	GCNGC	2 cut(s)	254, 287
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	410
BmtI	GCTAGC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	208
BseAI	TCCGGA	1 cut(s)	407
BseGI	GGATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	35, 44
Bsh1285I	CGRYCG	2 cut(s)	260, 283
BshFI	GGCC	3 cut(s)	252, 274, 508
BsiEI	CGRYCG	2 cut(s)	260, 283
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	209, 408
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	82, 595
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	252, 274, 508
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	4 cut(s)	177, 226, 280, 337
BspACI	CCGC	7 cut(s)	162, 235, 253, 260, 286, 290, 384
BspANI	GGCC	3 cut(s)	252, 274, 508
BspEI	TCCGGA	1 cut(s)	407
BspOI	GCTAGC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	82
BsrBI	CCGCTC	2 cut(s)	237, 292
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	4 cut(s)	177, 226, 280, 337
Bst4CI	ACNGT	2 cut(s)	245, 519
Bst6I	CTCTTC	5 cut(s)	22, 34, 45, 64, 146
BstC8I	GCNNGC	6 cut(s)	160, 173, 190, 290, 478, 482
BstF5I	GGATG	1 cut(s)	488
BstKTI	GATC	4 cut(s)	180, 229, 283, 340
BstMAI	GTCTC	2 cut(s)	82, 595
BstMBI	GATC	4 cut(s)	177, 226, 280, 337
BstMCI	CGRYCG	2 cut(s)	260, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 285, 298
BstSFI	CTRYAG	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	520
BstX2I	RGATCY	2 cut(s)	177, 226
BstYI	RGATCY	2 cut(s)	177, 226
BsuRI	GGCC	3 cut(s)	252, 274, 508
BtsCI	GGATG	1 cut(s)	488
Cac8I	GCNNGC	6 cut(s)	160, 173, 190, 290, 478, 482
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	410
CpoI	CGGWCCG	1 cut(s)	410
CseI	GACGC	1 cut(s)	482
CspI	CGGWCCG	1 cut(s)	410
CviAII	CATG	1 cut(s)	248
DpnI	GATC	4 cut(s)	179, 228, 282, 339
DpnII	GATC	4 cut(s)	177, 226, 280, 337
DrdI	GACNNNNNNGTC	1 cut(s)	417
DseDI	GACNNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	5 cut(s)	22, 34, 45, 64, 146
EarI	CTCTTC	5 cut(s)	22, 34, 45, 64, 146
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	1 cut(s)	251
FaiI	YATR	6 cut(s)	222, 249, 396, 434, 558, 607
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	247
FauI	CCCGC	2 cut(s)	155, 297
Fnu4HI	GCNGC	2 cut(s)	253, 286
FokI	GGATG	1 cut(s)	475
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	253, 286
FspBI	CTAG	4 cut(s)	68, 95, 102, 477
GluI	GCNGC	2 cut(s)	253, 286
HaeIII	GGCC	3 cut(s)	252, 274, 508
HapII	CCGG	2 cut(s)	209, 408
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	98, 314
HpaII	CCGG	2 cut(s)	209, 408
HphI	GGTGA	2 cut(s)	223, 460
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	241, 453
Hpy188III	TCNNGA	2 cut(s)	308, 408
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	3 cut(s)	309, 476, 523
HpyAV	CCTTC	3 cut(s)	132, 188, 495
HpyCH4III	ACNGT	2 cut(s)	245, 519
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	3 cut(s)	224, 548, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 285, 298
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	1 cut(s)	251
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	177, 226, 280, 337
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	9 cut(s)	153, 166, 168, 174, 222, 421, 494, 537, 577
MaeI	CTAG	4 cut(s)	68, 95, 102, 477
MaeII	ACGT	1 cut(s)	543
MalI	GATC	4 cut(s)	179, 228, 282, 339
MbiI	CCGCTC	2 cut(s)	237, 292
MboI	GATC	4 cut(s)	177, 226, 280, 337
MflI	RGATCY	2 cut(s)	177, 226
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	3 cut(s)	324, 374, 391
MlyI	GAGTC	2 cut(s)	92, 308
MmeI	TCCRAC	2 cut(s)	264, 446
MnlI	CCTC	9 cut(s)	23, 48, 56, 65, 121, 149, 455, 506, 588
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	1 cut(s)	567
MspI	CCGG	2 cut(s)	209, 408
Mva1269I	GAATGC	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	168, 285, 298
NdeII	GATC	4 cut(s)	177, 226, 280, 337
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	497
PctI	GAATGC	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	254, 287
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	2 cut(s)	92, 308
PpsI	GAGTC	2 cut(s)	92, 308
PshBI	ATTAAT	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	410
PspXI	VCTCGAGB	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	177, 226
PvuI	CGATCG	1 cut(s)	283
RgaI	GCGATCGC	1 cut(s)	283
Rsr2I	CGGWCCG	1 cut(s)	410
RsrII	CGGWCCG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	2 cut(s)	253, 286
Sau3AI	GATC	4 cut(s)	177, 226, 280, 337
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	92, 308
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	5 cut(s)	107, 447, 498, 546, 593
SfaAI	GCGATCGC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	497
SgfI	GCGATCGC	1 cut(s)	283
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	3 cut(s)	324, 374, 391
SsiI	CCGC	7 cut(s)	162, 235, 253, 260, 286, 290, 384
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	4 cut(s)	68, 95, 102, 477
TaaI	ACNGT	2 cut(s)	245, 519
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	2 cut(s)	307, 498
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	3 cut(s)	324, 374, 391
TauI	GCSGC	2 cut(s)	255, 288
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TspDTI	ATGAA	2 cut(s)	17, 477
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	567
XhoI	CTCGAG	1 cut(s)	497
XspI	CTAG	4 cut(s)	68, 95, 102, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.