AT1G16300

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5574257 .. 5577622
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16300.1

Sequence Viewer

Length: 1263 bp
ATGGCCTTATCTTCTCTCCTCAGATCTGCCGCCACTTCCGCCGCAGCTCCTCGTGTCGAGCTTTATCCATCGTCATCGTACAATCATTCTCAGGTCACGTCAAGTCTTGGATTCAGTCATAGCCTGACCTCGTCTAGATTTTCTGGTGCTGCAGTTTCAACCGGAAAATACAATGCGAAGAGGGTTCAACCCATCAAGGCCACAGCTACGGAAGCACCTCCTGCTGTTCATAGGTCAAGGAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATTGGAAGATTGGTCCTCCGCATCGCAACCTTTAGGGATGATATCGAGGTTGTAGCAGTCAACGATCCATTCATAGATGCCAAGTACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAAATTACAAAGGAACTATCAATGTAATTGATGATTCAACTTTGGAGATCAATGGAAAACAAGTCAAAGTTGTCAGCAAGAGAGACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGAGTATGTTGTTGAGTCTTCAGGGGTATTCACCACCGTTGGACAAGCTTCATCACATTTGAAGGGTGGTGCTAAGAAGGTCATCATTTCTGCACCTTCAGCGGACGCGCCCATGTTTGTTGTTGGAGTAAATGAAAAGACATACCTGCCTAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAAGGCTTGATGACAACAGTCCACGCGACCACAGCTACTCAGAAAACTGTGGACGGCCCATCAATGAAGGACTGGAGAGGAGGCCGAGGCGCAAGTCAAAACATCATTCCTAGCTCAACAGGCGCTGCAAAGGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGACTTGAGAAGGATGCATCGTATGAAGACGTCAAGGCAGCCATAAAGTTTGCATCAGAAGGACCACTTAGGGGCATTCTTGGATATACAGAAGAAGATGTCGTCTCTAATGATTTTCTTGGAGATTCAAGGTCAAGTATCTTTGATGCTAATGCTGGGATTGGATTAAGCAAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACAGCAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCGCTAA

Protein Analysis

420

Amino Acids

44.85

Weight (kDa)

8.73

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 86 - 186 1.1e-37 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 239 - 396 1.5e-68 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1020
Acc36I ACCTGC 1 cut(s) 675
AccI GTMKAC 1 cut(s) 988
AccII CGCG 2 cut(s) 629, 785
AccIII TCCGGA 1 cut(s) 910
AciI CCGC 6 cut(s) 30, 39, 42, 301, 623, 1258
AclWI GGATC 2 cut(s) 272, 341
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 2 cut(s) 525, 603
AcyI GRCGYC 1 cut(s) 1017
AfaI GTAC 3 cut(s) 80, 368, 703
AfiI CCNNNNNNNGG 1 cut(s) 1058
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 7 cut(s) 159, 188, 385, 441, 583, 761, 1116
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 1181
AluBI AGCT 8 cut(s) 47, 61, 206, 494, 521, 569, 794, 873
AluI AGCT 8 cut(s) 47, 61, 206, 494, 521, 569, 794, 873
Alw26I GTCTC 5 cut(s) 480, 691, 970, 1096, 1183
AlwI GGATC 2 cut(s) 272, 341
AlwNI CAGNNNCTG 1 cut(s) 884
Aor13HI TCCGGA 1 cut(s) 910
AoxI GGCC 5 cut(s) 3, 198, 814, 841, 939
ApeKI GCWGC 5 cut(s) 44, 149, 884, 1025, 1250
ApoI RAATTY 1 cut(s) 746
AspLEI GCGC 3 cut(s) 631, 851, 884
AspS9I GGNCC 4 cut(s) 295, 815, 904, 1049
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 3 cut(s) 295, 904, 1049
BauI CACGAG 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 531, 1020
BbvI GCAGC 4 cut(s) 56, 136, 871, 1037
BccI CCATC 3 cut(s) 76, 200, 826
BceAI ACGGC 1 cut(s) 829
BciT130I CCWGG 1 cut(s) 1183
BcoDI GTCTC 5 cut(s) 480, 691, 970, 1096, 1183
BfaI CTAG 2 cut(s) 135, 870
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 885
BfuAI ACCTGC 1 cut(s) 675
BglII AGATCT 1 cut(s) 23
BisI GCNGC 8 cut(s) 30, 42, 45, 150, 885, 1026, 1251, 1258
BlsI GCNGC 8 cut(s) 31, 43, 46, 151, 886, 1027, 1252, 1259
Bme1390I CCNGG 1 cut(s) 1183
Bme18I GGWCC 3 cut(s) 295, 904, 1049
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 4 cut(s) 295, 815, 904, 1049
BmrFI CCNGG 1 cut(s) 1183
BmsI GCATC 6 cut(s) 312, 349, 991, 1013, 1049, 1123
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 2 cut(s) 531, 1020
BpmI CTGGAG 1 cut(s) 853
BpuEI CTTGAG 1 cut(s) 1013
BsaHI GRCGYC 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 503, 729, 844
BsaWI WCCGGW 2 cut(s) 161, 910
Bsc4I CCNNNNNNNGG 1 cut(s) 1058
Bse1I ACTGG 1 cut(s) 836
BseAI TCCGGA 1 cut(s) 910
BseBI CCWGG 1 cut(s) 1183
BseDI CCNNGG 3 cut(s) 503, 729, 844
BseGI GGATG 2 cut(s) 325, 1006
BseLI CCNNNNNNNGG 1 cut(s) 1058
BseMII CTCAG 4 cut(s) 34, 104, 513, 812
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 3 cut(s) 8, 39, 852
BseXI GCAGC 4 cut(s) 56, 136, 871, 1037
BseYI CCCAGC 2 cut(s) 490, 1142
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 2 cut(s) 629, 785
BshFI GGCC 5 cut(s) 5, 200, 816, 843, 941
BsiSI CCGG 2 cut(s) 162, 911
BslFI GGGAC 1 cut(s) 935
BslI CCNNNNNNNGG 1 cut(s) 1058
BsmAI GTCTC 5 cut(s) 480, 691, 970, 1096, 1183
BsmBI CGTCTC 1 cut(s) 1096
BsmFI GGGAC 1 cut(s) 935
BsmI GAATGC 1 cut(s) 1062
BsnI GGCC 5 cut(s) 5, 200, 816, 843, 941
Bso31I GGTCTC 1 cut(s) 480
Bsp13I TCCGGA 1 cut(s) 910
Bsp143I GATC 5 cut(s) 23, 264, 346, 450, 511
BspACI CCGC 6 cut(s) 30, 39, 42, 301, 623, 1258
BspANI GGCC 5 cut(s) 5, 200, 816, 843, 941
BspCNI CTCAG 4 cut(s) 33, 103, 514, 811
BspEI TCCGGA 1 cut(s) 910
BspFNI CGCG 2 cut(s) 629, 785
BspHI TCATGA 1 cut(s) 1167
BspMAI CTGCAG 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 675
BspPI GGATC 2 cut(s) 272, 341
BspTNI GGTCTC 1 cut(s) 480
BsrI ACTGG 1 cut(s) 836
BssECI CCNNGG 3 cut(s) 503, 729, 844
BssMI GATC 5 cut(s) 23, 264, 346, 450, 511
BssNI GRCGYC 1 cut(s) 1017
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 1183
Bst4CI ACNGT 4 cut(s) 272, 559, 778, 808
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 1017
BstAPI GCANNNNNTGC 2 cut(s) 221, 725
BstC8I GCNNGC 1 cut(s) 1255
BstDEI CTNAG 6 cut(s) 20, 90, 522, 594, 798, 1055
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 2 cut(s) 325, 1006
BstFNI CGCG 2 cut(s) 629, 785
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 3 cut(s) 631, 851, 884
BstKTI GATC 5 cut(s) 26, 267, 349, 453, 514
BstMAI GTCTC 5 cut(s) 480, 691, 970, 1096, 1183
BstMBI GATC 5 cut(s) 23, 264, 346, 450, 511
BstMWI GCNNNNNNNGC 9 cut(s) 38, 212, 221, 620, 725, 791, 879, 890, 1247
BstNI CCWGG 1 cut(s) 1183
BstNSI RCATGY 1 cut(s) 382
BstPAI GACNNNNGTC 1 cut(s) 776
BstSCI CCNGG 1 cut(s) 1181
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 2 cut(s) 629, 785
BstV1I GCAGC 4 cut(s) 56, 136, 871, 1037
BstV2I GAAGAC 2 cut(s) 531, 1020
BstX2I RGATCY 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 5 cut(s) 5, 200, 816, 843, 941
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 325, 1006
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 675
Cac8I GCNNGC 1 cut(s) 1255
CaiI CAGNNNCTG 1 cut(s) 884
CciI TCATGA 1 cut(s) 1167
CfoI GCGC 3 cut(s) 631, 851, 884
Cfr13I GGNCC 4 cut(s) 295, 815, 904, 1049
CseI GACGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 79, 367, 702
CviAII CATG 8 cut(s) 370, 379, 401, 634, 676, 740, 1168, 1237
CviQI GTAC 3 cut(s) 79, 367, 702
DdeI CTNAG 6 cut(s) 20, 90, 522, 594, 798, 1055
DpnI GATC 5 cut(s) 25, 266, 348, 452, 513
DpnII GATC 5 cut(s) 23, 264, 346, 450, 511
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 480
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 3 cut(s) 295, 904, 1049
Eco57I CTGAAG 2 cut(s) 525, 603
EcoO109I RGGNCCY 1 cut(s) 904
EcoRII CCWGG 1 cut(s) 1181
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 1096
FaeI CATG 8 cut(s) 373, 382, 404, 637, 679, 743, 1171, 1240
FalI AAGNNNNNCTT 2 cut(s) 1038, 1070
FaqI GGGAC 1 cut(s) 935
FatI CATG 8 cut(s) 369, 378, 400, 633, 675, 739, 1167, 1236
FblI GTMKAC 1 cut(s) 988
Fnu4HI GCNGC 8 cut(s) 30, 42, 45, 150, 885, 1026, 1251, 1258
FokI GGATG 2 cut(s) 332, 1013
Fsp4HI GCNGC 8 cut(s) 30, 42, 45, 150, 885, 1026, 1251, 1258
FspBI CTAG 2 cut(s) 135, 870
GlaI GCGC 3 cut(s) 630, 850, 883
GluI GCNGC 8 cut(s) 30, 42, 45, 150, 885, 1026, 1251, 1258
GsaI CCCAGC 2 cut(s) 494, 1146
GsuI CTGGAG 1 cut(s) 853
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 5 cut(s) 5, 200, 816, 843, 941
HapII CCGG 2 cut(s) 162, 911
HgaI GACGC 1 cut(s) 635
HhaI GCGC 3 cut(s) 631, 851, 884
Hin1I GRCGYC 1 cut(s) 1017
Hin1II CATG 8 cut(s) 373, 382, 404, 637, 679, 743, 1171, 1240
Hin6I GCGC 3 cut(s) 629, 849, 882
HinP1I GCGC 3 cut(s) 629, 849, 882
HincII GTYRAC 2 cut(s) 343, 989
HindII GTYRAC 2 cut(s) 343, 989
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 6 cut(s) 111, 392, 437, 536, 1112, 1215
HpaII CCGG 2 cut(s) 162, 911
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 4 cut(s) 343, 781, 811, 989
Hpy188I TCNGA 3 cut(s) 23, 801, 1045
Hpy188III TCNNGA 4 cut(s) 135, 758, 911, 1168
Hpy8I GTNNAC 4 cut(s) 343, 781, 811, 989
HpyCH4III ACNGT 4 cut(s) 272, 559, 778, 808
HpyCH4IV ACGT 2 cut(s) 98, 1017
HpyCH4V TGCA 9 cut(s) 152, 614, 695, 719, 739, 887, 1004, 1040, 1250
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 212, 221, 620, 725, 791, 879, 890, 1247
HpyF3I CTNAG 6 cut(s) 20, 90, 522, 594, 798, 1055
HpySE526I ACGT 2 cut(s) 98, 1017
Hsp92I GRCGYC 1 cut(s) 1017
Hsp92II CATG 8 cut(s) 373, 382, 404, 637, 679, 743, 1171, 1240
HspAI GCGC 3 cut(s) 629, 849, 882
Kpn2I TCCGGA 1 cut(s) 910
Kzo9I GATC 5 cut(s) 23, 264, 346, 450, 511
LmnI GCTCC 3 cut(s) 52, 240, 518
Lsp1109I GCAGC 4 cut(s) 56, 136, 871, 1037
LweI GCATC 6 cut(s) 312, 349, 991, 1013, 1049, 1123
MaeI CTAG 2 cut(s) 135, 870
MaeII ACGT 2 cut(s) 98, 1017
MaeIII GTNAC 2 cut(s) 94, 1202
MalI GATC 5 cut(s) 25, 266, 348, 452, 513
MboI GATC 5 cut(s) 23, 264, 346, 450, 511
MboII GAAGA 7 cut(s) 3, 190, 300, 531, 1025, 1091, 1094
MfeI CAATTG 1 cut(s) 709
MflI RGATCY 1 cut(s) 23
MluCI AATT 5 cut(s) 282, 406, 429, 709, 746
MlyI GAGTC 2 cut(s) 545, 1224
MmeI TCCRAC 2 cut(s) 541, 625
Mph1103I ATGCAT 1 cut(s) 1006
MroI TCCGGA 1 cut(s) 910
MseI TTAA 2 cut(s) 980, 1154
MspA1I CMGCKG 2 cut(s) 494, 623
MspI CCGG 2 cut(s) 162, 911
MspR9I CCNGG 1 cut(s) 1183
MunI CAATTG 1 cut(s) 709
Mva1269I GAATGC 1 cut(s) 1062
MvaI CCWGG 1 cut(s) 1183
MvnI CGCG 2 cut(s) 629, 785
MwoI GCNNNNNNNGC 9 cut(s) 38, 212, 221, 620, 725, 791, 879, 890, 1247
NdeII GATC 5 cut(s) 23, 264, 346, 450, 511
NlaIII CATG 8 cut(s) 373, 382, 404, 637, 679, 743, 1171, 1240
NmeAIII GCCGAG 1 cut(s) 869
NmuCI GTSAC 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 1006
NspI RCATGY 1 cut(s) 382
PagI TCATGA 1 cut(s) 1167
PciI ACATGT 1 cut(s) 378
PctI GAATGC 1 cut(s) 1062
PfeI GAWTC 4 cut(s) 111, 392, 437, 1112
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 8 cut(s) 31, 43, 46, 151, 886, 1027, 1252, 1259
PleI GAGTC 2 cut(s) 544, 1223
PpsI GAGTC 2 cut(s) 544, 1223
PpuMI RGGWCCY 1 cut(s) 904
PscI ACATGT 1 cut(s) 378
PshAI GACNNNNGTC 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 904
Psp6I CCWGG 1 cut(s) 1181
PspFI CCCAGC 2 cut(s) 490, 1142
PspGI CCWGG 1 cut(s) 1181
PspPI GGNCC 4 cut(s) 295, 815, 904, 1049
PspPPI RGGWCCY 1 cut(s) 904
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 3 cut(s) 80, 368, 703
RsaNI GTAC 3 cut(s) 79, 367, 702
SalI GTCGAC 1 cut(s) 987
SaqAI TTAA 2 cut(s) 980, 1154
SatI GCNGC 8 cut(s) 30, 42, 45, 150, 885, 1026, 1251, 1258
Sau3AI GATC 5 cut(s) 23, 264, 346, 450, 511
Sau96I GGNCC 4 cut(s) 295, 815, 904, 1049
SchI GAGTC 2 cut(s) 545, 1224
ScrFI CCNGG 1 cut(s) 1183
SfaNI GCATC 6 cut(s) 312, 349, 991, 1013, 1049, 1123
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 3 cut(s) 295, 904, 1049
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
Sse9I AATT 5 cut(s) 282, 406, 429, 709, 746
SsiI CCGC 6 cut(s) 30, 39, 42, 301, 623, 1258
SspMI CTAG 2 cut(s) 135, 870
StyD4I CCNGG 1 cut(s) 1181
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 4 cut(s) 272, 559, 778, 808
TaiI ACGT 2 cut(s) 101, 1020
TaqI TCGA 4 cut(s) 57, 280, 327, 988
TasI AATT 5 cut(s) 282, 406, 429, 709, 746
TatI WGTACW 1 cut(s) 366
TauI GCSGC 3 cut(s) 32, 44, 1260
TfiI GAWTC 4 cut(s) 111, 392, 437, 1112
Tru1I TTAA 2 cut(s) 980, 1154
Tru9I TTAA 2 cut(s) 980, 1154
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 5 cut(s) 44, 149, 884, 1025, 1250
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 8 cut(s) 218, 343, 561, 669, 839, 1026, 1156, 1184
TspGWI ACGGA 2 cut(s) 224, 935
TspRI CASTG 1 cut(s) 250
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 3 cut(s) 295, 904, 1049
XapI RAATTY 1 cut(s) 746
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 988
XspI CTAG 2 cut(s) 135, 870
ZraI GACGTC 1 cut(s) 1018
Zsp2I ATGCAT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.