Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16300 AT1G79530 |
| fragaria_vesca | FvH4_3g14640 |
| malus_domestica | MD05G1234400.v1.1 MD10G1210900.v1.1 |
| prunus_persica | Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1 |
| pyrus_communis | pycom05g21170 pycom10g17920 pycom10g17930 |
| rosa_chinensis | RchiOBHm_Chr5g0024101 |
| rosa_laevigata | RLG00000032770 |
| rosa_multiflora | Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00055140 Rroxscaffold_1G00055670 |
| rosa_rugosa | Rorug05G0081300 |
| rosa_samantha | Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000 |
| rosa_wichuraiana | Rw0G003230 Rw5G015540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1020 |
| Acc36I | ACCTGC | 1 cut(s) | 675 |
| AccI | GTMKAC | 1 cut(s) | 988 |
| AccII | CGCG | 2 cut(s) | 629, 785 |
| AccIII | TCCGGA | 1 cut(s) | 910 |
| AciI | CCGC | 6 cut(s) | 30, 39, 42, 301, 623, 1258 |
| AclWI | GGATC | 2 cut(s) | 272, 341 |
| AcsI | RAATTY | 1 cut(s) | 746 |
| AcuI | CTGAAG | 2 cut(s) | 525, 603 |
| AcyI | GRCGYC | 1 cut(s) | 1017 |
| AfaI | GTAC | 3 cut(s) | 80, 368, 703 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1058 |
| AflIII | ACRYGT | 1 cut(s) | 378 |
| AgsI | TTSAA | 7 cut(s) | 159, 188, 385, 441, 583, 761, 1116 |
| AjiI | CACGTC | 1 cut(s) | 99 |
| AjnI | CCWGG | 1 cut(s) | 1181 |
| AluBI | AGCT | 8 cut(s) | 47, 61, 206, 494, 521, 569, 794, 873 |
| AluI | AGCT | 8 cut(s) | 47, 61, 206, 494, 521, 569, 794, 873 |
| Alw26I | GTCTC | 5 cut(s) | 480, 691, 970, 1096, 1183 |
| AlwI | GGATC | 2 cut(s) | 272, 341 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 884 |
| Aor13HI | TCCGGA | 1 cut(s) | 910 |
| AoxI | GGCC | 5 cut(s) | 3, 198, 814, 841, 939 |
| ApeKI | GCWGC | 5 cut(s) | 44, 149, 884, 1025, 1250 |
| ApoI | RAATTY | 1 cut(s) | 746 |
| AspLEI | GCGC | 3 cut(s) | 631, 851, 884 |
| AspS9I | GGNCC | 4 cut(s) | 295, 815, 904, 1049 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AvaII | GGWCC | 3 cut(s) | 295, 904, 1049 |
| BauI | CACGAG | 1 cut(s) | 51 |
| BbsI | GAAGAC | 2 cut(s) | 531, 1020 |
| BbvI | GCAGC | 4 cut(s) | 56, 136, 871, 1037 |
| BccI | CCATC | 3 cut(s) | 76, 200, 826 |
| BceAI | ACGGC | 1 cut(s) | 829 |
| BciT130I | CCWGG | 1 cut(s) | 1183 |
| BcoDI | GTCTC | 5 cut(s) | 480, 691, 970, 1096, 1183 |
| BfaI | CTAG | 2 cut(s) | 135, 870 |
| BfmI | CTRYAG | 1 cut(s) | 150 |
| BfoI | RGCGCY | 1 cut(s) | 885 |
| BfuAI | ACCTGC | 1 cut(s) | 675 |
| BglII | AGATCT | 1 cut(s) | 23 |
| BisI | GCNGC | 8 cut(s) | 30, 42, 45, 150, 885, 1026, 1251, 1258 |
| BlsI | GCNGC | 8 cut(s) | 31, 43, 46, 151, 886, 1027, 1252, 1259 |
| Bme1390I | CCNGG | 1 cut(s) | 1183 |
| Bme18I | GGWCC | 3 cut(s) | 295, 904, 1049 |
| BmgBI | CACGTC | 1 cut(s) | 99 |
| BmgT120I | GGNCC | 4 cut(s) | 295, 815, 904, 1049 |
| BmrFI | CCNGG | 1 cut(s) | 1183 |
| BmsI | GCATC | 6 cut(s) | 312, 349, 991, 1013, 1049, 1123 |
| BoxI | GACNNNNGTC | 1 cut(s) | 776 |
| BpiI | GAAGAC | 2 cut(s) | 531, 1020 |
| BpmI | CTGGAG | 1 cut(s) | 853 |
| BpuEI | CTTGAG | 1 cut(s) | 1013 |
| BsaHI | GRCGYC | 1 cut(s) | 1017 |
| BsaI | GGTCTC | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 3 cut(s) | 503, 729, 844 |
| BsaWI | WCCGGW | 2 cut(s) | 161, 910 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1058 |
| Bse1I | ACTGG | 1 cut(s) | 836 |
| BseAI | TCCGGA | 1 cut(s) | 910 |
| BseBI | CCWGG | 1 cut(s) | 1183 |
| BseDI | CCNNGG | 3 cut(s) | 503, 729, 844 |
| BseGI | GGATG | 2 cut(s) | 325, 1006 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1058 |
| BseMII | CTCAG | 4 cut(s) | 34, 104, 513, 812 |
| BseNI | ACTGG | 1 cut(s) | 836 |
| BseRI | GAGGAG | 3 cut(s) | 8, 39, 852 |
| BseXI | GCAGC | 4 cut(s) | 56, 136, 871, 1037 |
| BseYI | CCCAGC | 2 cut(s) | 490, 1142 |
| BsgI | GTGCAG | 1 cut(s) | 597 |
| Bsh1236I | CGCG | 2 cut(s) | 629, 785 |
| BshFI | GGCC | 5 cut(s) | 5, 200, 816, 843, 941 |
| BsiSI | CCGG | 2 cut(s) | 162, 911 |
| BslFI | GGGAC | 1 cut(s) | 935 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1058 |
| BsmAI | GTCTC | 5 cut(s) | 480, 691, 970, 1096, 1183 |
| BsmBI | CGTCTC | 1 cut(s) | 1096 |
| BsmFI | GGGAC | 1 cut(s) | 935 |
| BsmI | GAATGC | 1 cut(s) | 1062 |
| BsnI | GGCC | 5 cut(s) | 5, 200, 816, 843, 941 |
| Bso31I | GGTCTC | 1 cut(s) | 480 |
| Bsp13I | TCCGGA | 1 cut(s) | 910 |
| Bsp143I | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| BspACI | CCGC | 6 cut(s) | 30, 39, 42, 301, 623, 1258 |
| BspANI | GGCC | 5 cut(s) | 5, 200, 816, 843, 941 |
| BspCNI | CTCAG | 4 cut(s) | 33, 103, 514, 811 |
| BspEI | TCCGGA | 1 cut(s) | 910 |
| BspFNI | CGCG | 2 cut(s) | 629, 785 |
| BspHI | TCATGA | 1 cut(s) | 1167 |
| BspMAI | CTGCAG | 1 cut(s) | 154 |
| BspMI | ACCTGC | 1 cut(s) | 675 |
| BspPI | GGATC | 2 cut(s) | 272, 341 |
| BspTNI | GGTCTC | 1 cut(s) | 480 |
| BsrI | ACTGG | 1 cut(s) | 836 |
| BssECI | CCNNGG | 3 cut(s) | 503, 729, 844 |
| BssMI | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| BssNI | GRCGYC | 1 cut(s) | 1017 |
| BssSI | CACGAG | 1 cut(s) | 51 |
| BssT1I | CCWWGG | 1 cut(s) | 729 |
| Bst2BI | CACGAG | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 1183 |
| Bst4CI | ACNGT | 4 cut(s) | 272, 559, 778, 808 |
| Bst6I | CTCTTC | 1 cut(s) | 173 |
| BstACI | GRCGYC | 1 cut(s) | 1017 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 221, 725 |
| BstC8I | GCNNGC | 1 cut(s) | 1255 |
| BstDEI | CTNAG | 6 cut(s) | 20, 90, 522, 594, 798, 1055 |
| BstDSI | CCRYGG | 1 cut(s) | 503 |
| BstF5I | GGATG | 2 cut(s) | 325, 1006 |
| BstFNI | CGCG | 2 cut(s) | 629, 785 |
| BstH2I | RGCGCY | 1 cut(s) | 885 |
| BstHHI | GCGC | 3 cut(s) | 631, 851, 884 |
| BstKTI | GATC | 5 cut(s) | 26, 267, 349, 453, 514 |
| BstMAI | GTCTC | 5 cut(s) | 480, 691, 970, 1096, 1183 |
| BstMBI | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 38, 212, 221, 620, 725, 791, 879, 890, 1247 |
| BstNI | CCWGG | 1 cut(s) | 1183 |
| BstNSI | RCATGY | 1 cut(s) | 382 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 776 |
| BstSCI | CCNGG | 1 cut(s) | 1181 |
| BstSFI | CTRYAG | 1 cut(s) | 150 |
| BstUI | CGCG | 2 cut(s) | 629, 785 |
| BstV1I | GCAGC | 4 cut(s) | 56, 136, 871, 1037 |
| BstV2I | GAAGAC | 2 cut(s) | 531, 1020 |
| BstX2I | RGATCY | 1 cut(s) | 23 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 23 |
| BsuRI | GGCC | 5 cut(s) | 5, 200, 816, 843, 941 |
| BtgI | CCRYGG | 1 cut(s) | 503 |
| BtgZI | GCGATG | 1 cut(s) | 289 |
| BtrI | CACGTC | 1 cut(s) | 99 |
| BtsCI | GGATG | 2 cut(s) | 325, 1006 |
| BtsI | GCAGTG | 1 cut(s) | 250 |
| BtsIMutI | CAGTG | 1 cut(s) | 250 |
| BveI | ACCTGC | 1 cut(s) | 675 |
| Cac8I | GCNNGC | 1 cut(s) | 1255 |
| CaiI | CAGNNNCTG | 1 cut(s) | 884 |
| CciI | TCATGA | 1 cut(s) | 1167 |
| CfoI | GCGC | 3 cut(s) | 631, 851, 884 |
| Cfr13I | GGNCC | 4 cut(s) | 295, 815, 904, 1049 |
| CseI | GACGC | 1 cut(s) | 635 |
| Csp6I | GTAC | 3 cut(s) | 79, 367, 702 |
| CviAII | CATG | 8 cut(s) | 370, 379, 401, 634, 676, 740, 1168, 1237 |
| CviQI | GTAC | 3 cut(s) | 79, 367, 702 |
| DdeI | CTNAG | 6 cut(s) | 20, 90, 522, 594, 798, 1055 |
| DpnI | GATC | 5 cut(s) | 25, 266, 348, 452, 513 |
| DpnII | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| Eam1104I | CTCTTC | 1 cut(s) | 173 |
| EarI | CTCTTC | 1 cut(s) | 173 |
| EciI | GGCGGA | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 1 cut(s) | 729 |
| Eco31I | GGTCTC | 1 cut(s) | 480 |
| Eco32I | GATATC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 3 cut(s) | 295, 904, 1049 |
| Eco57I | CTGAAG | 2 cut(s) | 525, 603 |
| EcoO109I | RGGNCCY | 1 cut(s) | 904 |
| EcoRII | CCWGG | 1 cut(s) | 1181 |
| EcoRV | GATATC | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 1 cut(s) | 729 |
| EcoT22I | ATGCAT | 1 cut(s) | 1006 |
| ErhI | CCWWGG | 1 cut(s) | 729 |
| Esp3I | CGTCTC | 1 cut(s) | 1096 |
| FaeI | CATG | 8 cut(s) | 373, 382, 404, 637, 679, 743, 1171, 1240 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1038, 1070 |
| FaqI | GGGAC | 1 cut(s) | 935 |
| FatI | CATG | 8 cut(s) | 369, 378, 400, 633, 675, 739, 1167, 1236 |
| FblI | GTMKAC | 1 cut(s) | 988 |
| Fnu4HI | GCNGC | 8 cut(s) | 30, 42, 45, 150, 885, 1026, 1251, 1258 |
| FokI | GGATG | 2 cut(s) | 332, 1013 |
| Fsp4HI | GCNGC | 8 cut(s) | 30, 42, 45, 150, 885, 1026, 1251, 1258 |
| FspBI | CTAG | 2 cut(s) | 135, 870 |
| GlaI | GCGC | 3 cut(s) | 630, 850, 883 |
| GluI | GCNGC | 8 cut(s) | 30, 42, 45, 150, 885, 1026, 1251, 1258 |
| GsaI | CCCAGC | 2 cut(s) | 494, 1146 |
| GsuI | CTGGAG | 1 cut(s) | 853 |
| HaeII | RGCGCY | 1 cut(s) | 885 |
| HaeIII | GGCC | 5 cut(s) | 5, 200, 816, 843, 941 |
| HapII | CCGG | 2 cut(s) | 162, 911 |
| HgaI | GACGC | 1 cut(s) | 635 |
| HhaI | GCGC | 3 cut(s) | 631, 851, 884 |
| Hin1I | GRCGYC | 1 cut(s) | 1017 |
| Hin1II | CATG | 8 cut(s) | 373, 382, 404, 637, 679, 743, 1171, 1240 |
| Hin6I | GCGC | 3 cut(s) | 629, 849, 882 |
| HinP1I | GCGC | 3 cut(s) | 629, 849, 882 |
| HincII | GTYRAC | 2 cut(s) | 343, 989 |
| HindII | GTYRAC | 2 cut(s) | 343, 989 |
| HindIII | AAGCTT | 1 cut(s) | 567 |
| HinfI | GANTC | 6 cut(s) | 111, 392, 437, 536, 1112, 1215 |
| HpaII | CCGG | 2 cut(s) | 162, 911 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 4 cut(s) | 343, 781, 811, 989 |
| Hpy188I | TCNGA | 3 cut(s) | 23, 801, 1045 |
| Hpy188III | TCNNGA | 4 cut(s) | 135, 758, 911, 1168 |
| Hpy8I | GTNNAC | 4 cut(s) | 343, 781, 811, 989 |
| HpyCH4III | ACNGT | 4 cut(s) | 272, 559, 778, 808 |
| HpyCH4IV | ACGT | 2 cut(s) | 98, 1017 |
| HpyCH4V | TGCA | 9 cut(s) | 152, 614, 695, 719, 739, 887, 1004, 1040, 1250 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 38, 212, 221, 620, 725, 791, 879, 890, 1247 |
| HpyF3I | CTNAG | 6 cut(s) | 20, 90, 522, 594, 798, 1055 |
| HpySE526I | ACGT | 2 cut(s) | 98, 1017 |
| Hsp92I | GRCGYC | 1 cut(s) | 1017 |
| Hsp92II | CATG | 8 cut(s) | 373, 382, 404, 637, 679, 743, 1171, 1240 |
| HspAI | GCGC | 3 cut(s) | 629, 849, 882 |
| Kpn2I | TCCGGA | 1 cut(s) | 910 |
| Kzo9I | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| LmnI | GCTCC | 3 cut(s) | 52, 240, 518 |
| Lsp1109I | GCAGC | 4 cut(s) | 56, 136, 871, 1037 |
| LweI | GCATC | 6 cut(s) | 312, 349, 991, 1013, 1049, 1123 |
| MaeI | CTAG | 2 cut(s) | 135, 870 |
| MaeII | ACGT | 2 cut(s) | 98, 1017 |
| MaeIII | GTNAC | 2 cut(s) | 94, 1202 |
| MalI | GATC | 5 cut(s) | 25, 266, 348, 452, 513 |
| MboI | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| MboII | GAAGA | 7 cut(s) | 3, 190, 300, 531, 1025, 1091, 1094 |
| MfeI | CAATTG | 1 cut(s) | 709 |
| MflI | RGATCY | 1 cut(s) | 23 |
| MluCI | AATT | 5 cut(s) | 282, 406, 429, 709, 746 |
| MlyI | GAGTC | 2 cut(s) | 545, 1224 |
| MmeI | TCCRAC | 2 cut(s) | 541, 625 |
| Mph1103I | ATGCAT | 1 cut(s) | 1006 |
| MroI | TCCGGA | 1 cut(s) | 910 |
| MseI | TTAA | 2 cut(s) | 980, 1154 |
| MspA1I | CMGCKG | 2 cut(s) | 494, 623 |
| MspI | CCGG | 2 cut(s) | 162, 911 |
| MspR9I | CCNGG | 1 cut(s) | 1183 |
| MunI | CAATTG | 1 cut(s) | 709 |
| Mva1269I | GAATGC | 1 cut(s) | 1062 |
| MvaI | CCWGG | 1 cut(s) | 1183 |
| MvnI | CGCG | 2 cut(s) | 629, 785 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 38, 212, 221, 620, 725, 791, 879, 890, 1247 |
| NdeII | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| NlaIII | CATG | 8 cut(s) | 373, 382, 404, 637, 679, 743, 1171, 1240 |
| NmeAIII | GCCGAG | 1 cut(s) | 869 |
| NmuCI | GTSAC | 1 cut(s) | 94 |
| NsiI | ATGCAT | 1 cut(s) | 1006 |
| NspI | RCATGY | 1 cut(s) | 382 |
| PagI | TCATGA | 1 cut(s) | 1167 |
| PciI | ACATGT | 1 cut(s) | 378 |
| PctI | GAATGC | 1 cut(s) | 1062 |
| PfeI | GAWTC | 4 cut(s) | 111, 392, 437, 1112 |
| PflFI | GACNNNGTC | 1 cut(s) | 130 |
| PkrI | GCNGC | 8 cut(s) | 31, 43, 46, 151, 886, 1027, 1252, 1259 |
| PleI | GAGTC | 2 cut(s) | 544, 1223 |
| PpsI | GAGTC | 2 cut(s) | 544, 1223 |
| PpuMI | RGGWCCY | 1 cut(s) | 904 |
| PscI | ACATGT | 1 cut(s) | 378 |
| PshAI | GACNNNNGTC | 1 cut(s) | 776 |
| Psp5II | RGGWCCY | 1 cut(s) | 904 |
| Psp6I | CCWGG | 1 cut(s) | 1181 |
| PspFI | CCCAGC | 2 cut(s) | 490, 1142 |
| PspGI | CCWGG | 1 cut(s) | 1181 |
| PspPI | GGNCC | 4 cut(s) | 295, 815, 904, 1049 |
| PspPPI | RGGWCCY | 1 cut(s) | 904 |
| PstI | CTGCAG | 1 cut(s) | 154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 884 |
| PsuI | RGATCY | 1 cut(s) | 23 |
| PsyI | GACNNNGTC | 1 cut(s) | 130 |
| PvuII | CAGCTG | 1 cut(s) | 494 |
| RsaI | GTAC | 3 cut(s) | 80, 368, 703 |
| RsaNI | GTAC | 3 cut(s) | 79, 367, 702 |
| SalI | GTCGAC | 1 cut(s) | 987 |
| SaqAI | TTAA | 2 cut(s) | 980, 1154 |
| SatI | GCNGC | 8 cut(s) | 30, 42, 45, 150, 885, 1026, 1251, 1258 |
| Sau3AI | GATC | 5 cut(s) | 23, 264, 346, 450, 511 |
| Sau96I | GGNCC | 4 cut(s) | 295, 815, 904, 1049 |
| SchI | GAGTC | 2 cut(s) | 545, 1224 |
| ScrFI | CCNGG | 1 cut(s) | 1183 |
| SfaNI | GCATC | 6 cut(s) | 312, 349, 991, 1013, 1049, 1123 |
| SfcI | CTRYAG | 1 cut(s) | 150 |
| SinI | GGWCC | 3 cut(s) | 295, 904, 1049 |
| SmlI | CTYRAG | 1 cut(s) | 992 |
| SmoI | CTYRAG | 1 cut(s) | 992 |
| Sse9I | AATT | 5 cut(s) | 282, 406, 429, 709, 746 |
| SsiI | CCGC | 6 cut(s) | 30, 39, 42, 301, 623, 1258 |
| SspMI | CTAG | 2 cut(s) | 135, 870 |
| StyD4I | CCNGG | 1 cut(s) | 1181 |
| StyI | CCWWGG | 1 cut(s) | 729 |
| TaaI | ACNGT | 4 cut(s) | 272, 559, 778, 808 |
| TaiI | ACGT | 2 cut(s) | 101, 1020 |
| TaqI | TCGA | 4 cut(s) | 57, 280, 327, 988 |
| TasI | AATT | 5 cut(s) | 282, 406, 429, 709, 746 |
| TatI | WGTACW | 1 cut(s) | 366 |
| TauI | GCSGC | 3 cut(s) | 32, 44, 1260 |
| TfiI | GAWTC | 4 cut(s) | 111, 392, 437, 1112 |
| Tru1I | TTAA | 2 cut(s) | 980, 1154 |
| Tru9I | TTAA | 2 cut(s) | 980, 1154 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 94 |
| TseI | GCWGC | 5 cut(s) | 44, 149, 884, 1025, 1250 |
| Tsp45I | GTSAC | 1 cut(s) | 94 |
| TspDTI | ATGAA | 8 cut(s) | 218, 343, 561, 669, 839, 1026, 1156, 1184 |
| TspGWI | ACGGA | 2 cut(s) | 224, 935 |
| TspRI | CASTG | 1 cut(s) | 250 |
| Tth111I | GACNNNGTC | 1 cut(s) | 130 |
| VpaK11BI | GGWCC | 3 cut(s) | 295, 904, 1049 |
| XapI | RAATTY | 1 cut(s) | 746 |
| XbaI | TCTAGA | 1 cut(s) | 134 |
| XceI | RCATGY | 1 cut(s) | 382 |
| XmiI | GTMKAC | 1 cut(s) | 988 |
| XspI | CTAG | 2 cut(s) | 135, 870 |
| ZraI | GACGTC | 1 cut(s) | 1018 |
| Zsp2I | ATGCAT | 1 cut(s) | 1006 |