AT1G79530

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29915902 .. 29919408
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79530.1

Sequence Viewer

Length: 1269 bp
ATGGCCTTCTCTTCTCTCCTCAGATCTGCCGCCTCCTACACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTCTAAGGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGTGCCATCTGCAGTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGGATTGGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATATTGAGGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTTGGAGATCAATGGGAAGAAGGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATGGGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCTGTCAAAGGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGACGCACCTATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAACTGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCATTCCTAGCTCAACCGGCGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAAACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAGAAGGGTGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGAAGGACCTCTTAAAGGCATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTTCGTCGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTTTGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCTTATAGAGCACATGGCTTTGGTAGCTGCCAGCCACTAA

Protein Analysis

422

Amino Acids

44.83

Weight (kDa)

8.75

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 88 - 188 4.3e-39 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 241 - 398 7e-69 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AccB1I GGYRCC 3 cut(s) 596, 887, 1007
AccBSI CCGCTC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 994
AccII CGCG 1 cut(s) 893
AciI CCGC 5 cut(s) 30, 48, 307, 594, 891
AclWI GGATC 3 cut(s) 278, 488, 499
AcsI RAATTY 2 cut(s) 412, 752
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 3 cut(s) 80, 888, 1140
AfaI GTAC 5 cut(s) 374, 709, 957, 1079, 1193
AfiI CCNNNNNNNGG 3 cut(s) 571, 589, 1064
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 391, 418, 589, 767, 1122
AluBI AGCT 4 cut(s) 527, 800, 879, 1256
AluI AGCT 4 cut(s) 527, 800, 879, 1256
Alw21I GWGCWC 2 cut(s) 666, 1242
Alw26I GTCTC 3 cut(s) 697, 1102, 1189
AlwI GGATC 3 cut(s) 278, 488, 499
Ama87I CYCGRG 1 cut(s) 1073
AoxI GGCC 4 cut(s) 3, 204, 821, 945
ApeKI GCWGC 3 cut(s) 575, 1031, 1256
ApoI RAATTY 2 cut(s) 412, 752
AspLEI GCGC 2 cut(s) 857, 890
AspS9I GGNCC 4 cut(s) 301, 821, 1055, 1125
AsuHPI GGTGA 2 cut(s) 550, 1127
AsuII TTCGAA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 3 cut(s) 301, 1055, 1125
BanI GGYRCC 3 cut(s) 596, 887, 1007
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 2 cut(s) 666, 1242
BbvI GCAGC 3 cut(s) 562, 1043, 1243
BccI CCATC 6 cut(s) 142, 206, 232, 505, 812, 832
BceAI ACGGC 1 cut(s) 225
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 3 cut(s) 697, 1102, 1189
BfaI CTAG 2 cut(s) 858, 876
BfmI CTRYAG 4 cut(s) 213, 228, 795, 900
BfoI RGCGCY 2 cut(s) 858, 891
BglI GCCNNNNNGGC 1 cut(s) 896
BglII AGATCT 1 cut(s) 23
BisI GCNGC 6 cut(s) 30, 48, 576, 891, 1032, 1257
BlsI GCNGC 6 cut(s) 31, 49, 577, 892, 1033, 1258
Bme18I GGWCC 3 cut(s) 301, 1055, 1125
BmeT110I CYCGRG 1 cut(s) 1073
BmgT120I GGNCC 4 cut(s) 301, 821, 1055, 1125
BmiI GGNNCC 3 cut(s) 598, 889, 1009
BmsI GCATC 3 cut(s) 355, 435, 587
BoxI GACNNNNGTC 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 859
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 1019
BsaHI GRCGYC 3 cut(s) 80, 888, 1140
BsaJI CCNNGG 3 cut(s) 207, 509, 735
BsaWI WCCGGW 1 cut(s) 548
BsaXI ACNNNNNCTCC 2 cut(s) 832, 862
Bsc4I CCNNNNNNNGG 3 cut(s) 571, 589, 1064
Bse118I RCCGGY 2 cut(s) 76, 884
Bse1I ACTGG 2 cut(s) 842, 1128
Bse3DI GCAATG 2 cut(s) 184, 309
BseDI CCNNGG 3 cut(s) 207, 509, 735
BseGI GGATG 2 cut(s) 331, 578
BseLI CCNNNNNNNGG 3 cut(s) 571, 589, 1064
BseMI GCAATG 2 cut(s) 184, 309
BseMII CTCAG 4 cut(s) 34, 492, 818, 1062
BseNI ACTGG 2 cut(s) 842, 1128
BseRI GAGGAG 3 cut(s) 8, 42, 858
BseXI GCAGC 3 cut(s) 562, 1043, 1243
Bsh1236I CGCG 1 cut(s) 893
BshFI GGCC 4 cut(s) 5, 206, 823, 947
BshNI GGYRCC 3 cut(s) 596, 887, 1007
BsiHKAI GWGCWC 2 cut(s) 666, 1242
BsiHKCI CYCGRG 1 cut(s) 1073
BsiSI CCGG 3 cut(s) 77, 549, 885
BslI CCNNNNNNNGG 3 cut(s) 571, 589, 1064
BsmAI GTCTC 3 cut(s) 697, 1102, 1189
BsmBI CGTCTC 1 cut(s) 1102
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 4 cut(s) 5, 206, 823, 947
BsoBI CYCGRG 1 cut(s) 1073
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 666, 1242
Bsp143I GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 5 cut(s) 30, 48, 307, 594, 891
BspANI GGCC 4 cut(s) 5, 206, 823, 947
BspCNI CTCAG 4 cut(s) 33, 493, 817, 1061
BspFNI CGCG 1 cut(s) 893
BspLI GGNNCC 3 cut(s) 598, 889, 1009
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 3 cut(s) 278, 488, 499
BspT104I TTCGAA 1 cut(s) 235
BspT107I GGYRCC 3 cut(s) 596, 887, 1007
BsrBI CCGCTC 1 cut(s) 50
BsrDI GCAATG 2 cut(s) 184, 309
BsrFI RCCGGY 2 cut(s) 76, 884
BsrI ACTGG 2 cut(s) 842, 1128
BssAI RCCGGY 2 cut(s) 76, 884
BssECI CCNNGG 3 cut(s) 207, 509, 735
BssMI GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
BssNI GRCGYC 3 cut(s) 80, 888, 1140
BssT1I CCWWGG 2 cut(s) 509, 735
Bst4CI ACNGT 4 cut(s) 43, 278, 784, 814
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 3 cut(s) 80, 888, 1140
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 78, 1044, 1261
BstDEI CTNAG 5 cut(s) 20, 93, 501, 804, 1048
BstDSI CCRYGG 2 cut(s) 207, 509
BstENI CCTNNNNNAGG 2 cut(s) 569, 1062
BstF5I GGATG 2 cut(s) 331, 578
BstFNI CGCG 1 cut(s) 893
BstH2I RGCGCY 2 cut(s) 858, 891
BstHHI GCGC 2 cut(s) 857, 890
BstKTI GATC 7 cut(s) 26, 88, 273, 459, 496, 507, 520
BstMAI GTCTC 3 cut(s) 697, 1102, 1189
BstMBI GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
BstMWI GCNNNNNNNGC 6 cut(s) 626, 731, 797, 885, 896, 1253
BstNSI RCATGY 2 cut(s) 388, 1046
BstPAI GACNNNNGTC 1 cut(s) 782
BstSFI CTRYAG 4 cut(s) 213, 228, 795, 900
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 3 cut(s) 562, 1043, 1243
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 3 cut(s) 23, 493, 504
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 3 cut(s) 23, 493, 504
BsuRI GGCC 4 cut(s) 5, 206, 823, 947
BtgI CCRYGG 2 cut(s) 207, 509
BtsCI GGATG 2 cut(s) 331, 578
BtsI GCAGTG 2 cut(s) 256, 351
BtsIMutI CAGTG 2 cut(s) 256, 351
Cac8I GCNNGC 3 cut(s) 78, 1044, 1261
CfoI GCGC 2 cut(s) 857, 890
Cfr10I RCCGGY 2 cut(s) 76, 884
Cfr13I GGNCC 4 cut(s) 301, 821, 1055, 1125
CseI GACGC 3 cut(s) 69, 641, 1148
Csp6I GTAC 5 cut(s) 373, 708, 956, 1078, 1192
CviAII CATG 8 cut(s) 376, 385, 407, 510, 682, 746, 1043, 1243
CviQI GTAC 5 cut(s) 373, 708, 956, 1078, 1192
DdeI CTNAG 5 cut(s) 20, 93, 501, 804, 1048
DinI GGCGCC 1 cut(s) 889
DpnI GATC 7 cut(s) 25, 87, 272, 458, 495, 506, 519
DpnII GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 509, 735
Eco32I GATATC 1 cut(s) 156
Eco47I GGWCC 3 cut(s) 301, 1055, 1125
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 1073
EcoNI CCTNNNNNAGG 2 cut(s) 569, 1062
EcoO109I RGGNCCY 1 cut(s) 1055
EcoRV GATATC 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 509, 735
EgeI GGCGCC 1 cut(s) 889
EheI GGCGCC 1 cut(s) 889
ErhI CCWWGG 2 cut(s) 509, 735
Esp3I CGTCTC 1 cut(s) 1102
FaeI CATG 8 cut(s) 379, 388, 410, 513, 685, 749, 1046, 1246
FalI AAGNNNNNCTT 4 cut(s) 130, 162, 1044, 1076
FatI CATG 8 cut(s) 375, 384, 406, 509, 681, 745, 1042, 1242
FbaI TGATCA 1 cut(s) 85
FblI GTMKAC 1 cut(s) 994
Fnu4HI GCNGC 6 cut(s) 30, 48, 576, 891, 1032, 1257
FokI GGATG 2 cut(s) 338, 565
Fsp4HI GCNGC 6 cut(s) 30, 48, 576, 891, 1032, 1257
FspBI CTAG 2 cut(s) 858, 876
GlaI GCGC 2 cut(s) 856, 889
GluI GCNGC 6 cut(s) 30, 48, 576, 891, 1032, 1257
GsuI CTGGAG 1 cut(s) 859
HaeII RGCGCY 2 cut(s) 858, 891
HaeIII GGCC 4 cut(s) 5, 206, 823, 947
HapII CCGG 3 cut(s) 77, 549, 885
HgaI GACGC 3 cut(s) 69, 641, 1148
HhaI GCGC 2 cut(s) 857, 890
Hin1I GRCGYC 3 cut(s) 80, 888, 1140
Hin1II CATG 8 cut(s) 379, 388, 410, 513, 685, 749, 1046, 1246
Hin6I GCGC 2 cut(s) 855, 888
HinP1I GCGC 2 cut(s) 855, 888
HincII GTYRAC 1 cut(s) 995
HindII GTYRAC 1 cut(s) 995
HinfI GANTC 4 cut(s) 398, 443, 542, 1118
HpaII CCGG 3 cut(s) 77, 549, 885
HphI GGTGA 2 cut(s) 550, 1127
Hpy166II GTNNAC 5 cut(s) 658, 787, 956, 995, 1080
Hpy188I TCNGA 6 cut(s) 23, 85, 288, 502, 807, 1051
Hpy188III TCNNGA 4 cut(s) 138, 764, 917, 1226
Hpy8I GTNNAC 5 cut(s) 658, 787, 956, 995, 1080
Hpy99I CGWCG 2 cut(s) 76, 1115
HpyCH4III ACNGT 4 cut(s) 43, 278, 784, 814
HpyCH4V TGCA 7 cut(s) 182, 193, 230, 314, 578, 701, 745
HpyF10VI GCNNNNNNNGC 6 cut(s) 626, 731, 797, 885, 896, 1253
HpyF3I CTNAG 5 cut(s) 20, 93, 501, 804, 1048
Hsp92I GRCGYC 3 cut(s) 80, 888, 1140
Hsp92II CATG 8 cut(s) 379, 388, 410, 513, 685, 749, 1046, 1246
HspAI GCGC 2 cut(s) 855, 888
KasI GGCGCC 1 cut(s) 887
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
LmnI GCTCC 2 cut(s) 55, 524
Lsp1109I GCAGC 3 cut(s) 562, 1043, 1243
LweI GCATC 3 cut(s) 355, 435, 587
MaeI CTAG 2 cut(s) 858, 876
MaeIII GTNAC 1 cut(s) 1208
MalI GATC 7 cut(s) 25, 87, 272, 458, 495, 506, 519
MbiI CCGCTC 1 cut(s) 50
MboI GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
MboII GAAGA 8 cut(s) 3, 138, 150, 478, 537, 905, 1031, 1100
MfeI CAATTG 1 cut(s) 715
MflI RGATCY 3 cut(s) 23, 493, 504
MhlI GDGCHC 2 cut(s) 666, 1242
MluCI AATT 4 cut(s) 412, 612, 715, 752
Mly113I GGCGCC 1 cut(s) 888
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 266, 631
MreI CGCCGGCG 1 cut(s) 76
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 4 cut(s) 986, 1026, 1038, 1062
MspI CCGG 3 cut(s) 77, 549, 885
MunI CAATTG 1 cut(s) 715
Mva1269I GAATGC 1 cut(s) 1068
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 6 cut(s) 626, 731, 797, 885, 896, 1253
NaeI GCCGGC 1 cut(s) 78
NarI GGCGCC 1 cut(s) 888
NcoI CCATGG 1 cut(s) 509
NdeII GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 8 cut(s) 379, 388, 410, 513, 685, 749, 1046, 1246
NlaIV GGNNCC 3 cut(s) 598, 889, 1009
NspI RCATGY 2 cut(s) 388, 1046
NspV TTCGAA 1 cut(s) 235
PaeI GCATGC 1 cut(s) 1046
PciI ACATGT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 1068
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 398, 443, 1118
PkrI GCNGC 6 cut(s) 31, 49, 577, 892, 1033, 1258
PleI GAGTC 1 cut(s) 550
PluTI GGCGCC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 550
PpuMI RGGWCCY 1 cut(s) 1055
PscI ACATGT 1 cut(s) 384
PshAI GACNNNNGTC 1 cut(s) 782
PsiI TTATAA 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 1055
PspN4I GGNNCC 3 cut(s) 598, 889, 1009
PspPI GGNCC 4 cut(s) 301, 821, 1055, 1125
PspPPI RGGWCCY 1 cut(s) 1055
PsrI GAACNNNNNNTAC 2 cut(s) 894, 926
PstI CTGCAG 1 cut(s) 232
PsuI RGATCY 3 cut(s) 23, 493, 504
RsaI GTAC 5 cut(s) 374, 709, 957, 1079, 1193
RsaNI GTAC 5 cut(s) 373, 708, 956, 1078, 1192
SalI GTCGAC 1 cut(s) 993
SaqAI TTAA 4 cut(s) 986, 1026, 1038, 1062
SatI GCNGC 6 cut(s) 30, 48, 576, 891, 1032, 1257
Sau3AI GATC 7 cut(s) 23, 85, 270, 456, 493, 504, 517
Sau96I GGNCC 4 cut(s) 301, 821, 1055, 1125
SchI GAGTC 1 cut(s) 551
SduI GDGCHC 2 cut(s) 666, 1242
SfaNI GCATC 3 cut(s) 355, 435, 587
SfcI CTRYAG 4 cut(s) 213, 228, 795, 900
SfoI GGCGCC 1 cut(s) 889
SfuI TTCGAA 1 cut(s) 235
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 3 cut(s) 301, 1055, 1125
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SphI GCATGC 1 cut(s) 1046
Sse9I AATT 4 cut(s) 412, 612, 715, 752
SsiI CCGC 5 cut(s) 30, 48, 307, 594, 891
SspDI GGCGCC 1 cut(s) 887
SspMI CTAG 2 cut(s) 858, 876
StyI CCWWGG 2 cut(s) 509, 735
TaaI ACNGT 4 cut(s) 43, 278, 784, 814
TaqI TCGA 3 cut(s) 235, 965, 994
TasI AATT 4 cut(s) 412, 612, 715, 752
TatI WGTACW 1 cut(s) 372
TauI GCSGC 3 cut(s) 32, 50, 893
TfiI GAWTC 3 cut(s) 398, 443, 1118
Tru1I TTAA 4 cut(s) 986, 1026, 1038, 1062
Tru9I TTAA 4 cut(s) 986, 1026, 1038, 1062
TscAI CASTG 2 cut(s) 256, 351
TseI GCWGC 3 cut(s) 575, 1031, 1256
TspDTI ATGAA 4 cut(s) 150, 349, 845, 1101
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 2 cut(s) 256, 351
VpaK11BI GGWCC 3 cut(s) 301, 1055, 1125
XagI CCTNNNNNAGG 2 cut(s) 569, 1062
XapI RAATTY 2 cut(s) 412, 752
XceI RCATGY 2 cut(s) 388, 1046
XmiI GTMKAC 1 cut(s) 994
XspI CTAG 2 cut(s) 858, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.