Rw0G003230

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00110
Physical Location & Seq
Reverse (-)
12410 .. 16839
4430 bp
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UTR
Exon/CDS
Intron
Rw0G003230.1

Sequence Viewer

Length: 1275 bp
ATGGCGCTGCTCAGATCCACCGCCTCTGCTCCGTTGATCGAAGCCTCGCGCACCGACCTCTCTTTCTCCACCTCCGCTTCCTCCAAGGTGTCAAGCGTTGGGTTTGGGCGCAATCTGAACTGTTCAAAGGTGCAATCATCCATCTTTGGGGCTTCTATCTCAACCGGCTCGTCTTCTTTACAGACAAGTAGCGCCAGGAGTGTGCAGCCCATTAAAGCAACAGCCACCGAACTTCCACCCACGATTCAGAGATCAGGGAGTAGTGGGAAGATCAAAGTTGGAATCAATGGCTTTGGTCGGATTGGGCGGTTGGTTCTACGGATAGCGACCGCCAGGGATGATATAGAAGTGGTGGCAGTGAATGATCCTTTAGTTGATGCTAAGTACATGGCTTACATGTTTAAGTATGACTCTACACATGGAGTGTTTGATGGATCTATTAGTGTTGTGGACGGGTCCACCTTGGAAATAAATGGGAAGCAGATTAAAGTTGAGAGCAAAAGGGACCCTGCTGAGATCCCCTGGGGAAGTTATGGGGTGGAGTATGTAGTGGAATCTTCTGGGATTTTCACCACTCTTGATAAGGCTGCATTACATAAAAAGGGTGGTGCAAAAAAAGTGGTCATATCAGCTCCATCAGCTGATGCACCCATGTTTGTCGTAGGAGTAAATGAGAATACATACAAGCCAAATATGGACATAGTTTCTAATGCCAGCTGTACCACCAATTGCCTTGCTCCACTTGCCAAGGTGATTCATGAGGAATTTGGTATTCTTGAAGGTTTGATGACGACTGTGCATGCAACTACAGCAACACAAAAAACAGTTGATGGCCCATCAAGGAAGGACTGGAGAGGTGGCCGAGGAGCTGCACAGAATATCATTCCTAGTTCAACCGGTGCTGCAAAGGCTGTTGGTAAAGTTCTACCTGAACTCAATGGAAAGCTTACTGGAATGGCCTTCCGTGTCCCGACTCCTAATGTATCTGTTGTGGACTTAACTTGTCGACTTGAGAAGAGTTCTTCTTATGAGGATATCAAAGCTGCCATCAGGTATGCTGCTGATGGACCACTTAGAGGCATTCTTGGATACACTGATGAAGATGTGGTTTCCAATGATTTTGTTGGTGACTCAAGGTCCAGTATCTTTGATGCCAAGGCTGGATTAGCACTTAGTTCCTCCTTTGTTAAGCTAGTTTCGTGGTATGACAATGAATGGGGTTACAGCAACCGAGTTTTAGATCTCATAGAGCACATGGCATTGGTGGTAGCATAA

Protein Analysis

424

Amino Acids

44.91

Weight (kDa)

8.49

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 91 - 192 6.4e-38 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 245 - 402 4.6e-69 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1006
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 21, 75, 307, 330
AclWI GGATC 4 cut(s) 9, 359, 442, 511
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 1 cut(s) 764
AfaI GTAC 2 cut(s) 386, 721
AfiI CCNNNNNNNGG 2 cut(s) 147, 1076
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 896
AgsI TTSAA 3 cut(s) 126, 779, 894
AhdI GACNNNNNGTC 1 cut(s) 1135
AjnI CCWGG 3 cut(s) 194, 332, 521
AluBI AGCT 7 cut(s) 632, 641, 717, 869, 946, 1043, 1192
AluI AGCT 7 cut(s) 632, 641, 717, 869, 946, 1043, 1192
Alw21I GWGCWC 1 cut(s) 1254
AlwI GGATC 4 cut(s) 9, 359, 442, 511
AoxI GGCC 3 cut(s) 832, 859, 957
ApeKI GCWGC 7 cut(s) 7, 205, 587, 869, 902, 1043, 1058
ApoI RAATTY 1 cut(s) 764
AsiGI ACCGGT 1 cut(s) 896
AspLEI GCGC 4 cut(s) 7, 51, 111, 194
AspS9I GGNCC 5 cut(s) 456, 505, 833, 1067, 1137
AsuHPI GGTGA 3 cut(s) 562, 763, 1139
AvaII GGWCC 4 cut(s) 456, 505, 1067, 1137
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 1254
BbvI GCAGC 6 cut(s) 217, 574, 856, 889, 1030, 1045
BccI CCATC 7 cut(s) 149, 425, 643, 824, 844, 1055, 1058
BciT130I CCWGG 3 cut(s) 196, 334, 523
BciVI GTATCC 1 cut(s) 1082
BfaI CTAG 2 cut(s) 888, 1193
BfmI CTRYAG 1 cut(s) 807
BfoI RGCGCY 2 cut(s) 8, 195
BfuI GTATCC 1 cut(s) 1082
BglII AGATCT 1 cut(s) 1240
BisI GCNGC 7 cut(s) 8, 206, 588, 870, 903, 1044, 1059
BlsI GCNGC 7 cut(s) 9, 207, 589, 871, 904, 1045, 1060
Bme1390I CCNGG 3 cut(s) 196, 334, 523
Bme18I GGWCC 4 cut(s) 456, 505, 1067, 1137
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmgT120I GGNCC 5 cut(s) 456, 505, 833, 1067, 1137
BmiI GGNNCC 3 cut(s) 457, 506, 507
BmrFI CCNGG 3 cut(s) 196, 334, 523
BmsI GCATC 3 cut(s) 367, 634, 1141
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 871
BpuEI CTTGAG 2 cut(s) 1031, 1117
BsaJI CCNNGG 8 cut(s) 84, 333, 462, 521, 522, 747, 862, 1155
BsaWI WCCGGW 1 cut(s) 896
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1076
Bse118I RCCGGY 2 cut(s) 164, 896
Bse1I ACTGG 3 cut(s) 854, 955, 1140
BseBI CCWGG 3 cut(s) 196, 334, 523
BseDI CCNNGG 8 cut(s) 84, 333, 462, 521, 522, 747, 862, 1155
BseGI GGATG 2 cut(s) 137, 343
BseLI CCNNNNNNNGG 2 cut(s) 147, 1076
BseMII CTCAG 2 cut(s) 25, 504
BseNI ACTGG 3 cut(s) 854, 955, 1140
BseRI GAGGAG 1 cut(s) 879
BseXI GCAGC 6 cut(s) 217, 574, 856, 889, 1030, 1045
BsgI GTGCAG 2 cut(s) 224, 855
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 3 cut(s) 834, 861, 959
BshTI ACCGGT 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 1254
BsiSI CCGG 2 cut(s) 165, 897
BslFI GGGAC 2 cut(s) 518, 953
BslI CCNNNNNNNGG 2 cut(s) 147, 1076
BsmFI GGGAC 2 cut(s) 518, 953
BsmI GAATGC 1 cut(s) 1080
BsnI GGCC 3 cut(s) 834, 861, 959
Bsp1286I GDGCHC 1 cut(s) 1254
Bsp143I GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
BspACI CCGC 4 cut(s) 21, 75, 307, 330
BspANI GGCC 3 cut(s) 834, 861, 959
BspCNI CTCAG 2 cut(s) 24, 505
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 3 cut(s) 457, 506, 507
BspPI GGATC 4 cut(s) 9, 359, 442, 511
BsrFI RCCGGY 2 cut(s) 164, 896
BsrI ACTGG 3 cut(s) 854, 955, 1140
BssAI RCCGGY 2 cut(s) 164, 896
BssECI CCNNGG 8 cut(s) 84, 333, 462, 521, 522, 747, 862, 1155
BssMI GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
BssT1I CCWWGG 4 cut(s) 84, 462, 747, 1155
Bst2UI CCWGG 3 cut(s) 196, 334, 523
Bst4CI ACNGT 3 cut(s) 122, 796, 826
Bst6I CTCTTC 1 cut(s) 1010
BstC8I GCNNGC 2 cut(s) 715, 801
BstDEI CTNAG 5 cut(s) 11, 381, 513, 1073, 1172
BstF5I GGATG 2 cut(s) 137, 343
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 2 cut(s) 8, 195
BstHHI GCGC 4 cut(s) 7, 51, 111, 194
BstKTI GATC 8 cut(s) 17, 39, 254, 273, 367, 437, 519, 1243
BstMBI GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 5 cut(s) 638, 743, 809, 908, 1166
BstNI CCWGG 3 cut(s) 196, 334, 523
BstNSI RCATGY 2 cut(s) 400, 803
BstSCI CCNGG 3 cut(s) 194, 332, 521
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 6 cut(s) 217, 574, 856, 889, 1030, 1045
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 4 cut(s) 14, 434, 516, 1240
BstYI RGATCY 4 cut(s) 14, 434, 516, 1240
BsuI GTATCC 1 cut(s) 1082
BsuRI GGCC 3 cut(s) 834, 861, 959
BtsCI GGATG 2 cut(s) 137, 343
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 363, 1092
Cac8I GCNNGC 2 cut(s) 715, 801
CciI TCATGA 1 cut(s) 757
CfoI GCGC 4 cut(s) 7, 51, 111, 194
Cfr10I RCCGGY 2 cut(s) 164, 896
Cfr13I GGNCC 5 cut(s) 456, 505, 833, 1067, 1137
Csp6I GTAC 2 cut(s) 385, 720
CspAI ACCGGT 1 cut(s) 896
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 7 cut(s) 388, 397, 419, 652, 758, 800, 1255
CviQI GTAC 2 cut(s) 385, 720
DdeI CTNAG 5 cut(s) 11, 381, 513, 1073, 1172
DpnI GATC 8 cut(s) 16, 38, 253, 272, 366, 436, 518, 1242
DpnII GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
DriI GACNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 1 cut(s) 1010
Eam1105I GACNNNNNGTC 1 cut(s) 1135
EarI CTCTTC 1 cut(s) 1010
Eco130I CCWWGG 4 cut(s) 84, 462, 747, 1155
Eco32I GATATC 1 cut(s) 1036
Eco47I GGWCC 4 cut(s) 456, 505, 1067, 1137
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 3 cut(s) 194, 332, 521
EcoRV GATATC 1 cut(s) 1036
EcoT14I CCWWGG 4 cut(s) 84, 462, 747, 1155
ErhI CCWWGG 4 cut(s) 84, 462, 747, 1155
FaeI CATG 7 cut(s) 391, 400, 422, 655, 761, 803, 1258
FaqI GGGAC 2 cut(s) 518, 953
FatI CATG 7 cut(s) 387, 396, 418, 651, 757, 799, 1254
FblI GTMKAC 1 cut(s) 1006
Fnu4HI GCNGC 7 cut(s) 8, 206, 588, 870, 903, 1044, 1059
FokI GGATG 2 cut(s) 124, 350
Fsp4HI GCNGC 7 cut(s) 8, 206, 588, 870, 903, 1044, 1059
FspBI CTAG 2 cut(s) 888, 1193
GlaI GCGC 4 cut(s) 6, 50, 110, 193
GluI GCNGC 7 cut(s) 8, 206, 588, 870, 903, 1044, 1059
GsuI CTGGAG 1 cut(s) 871
HaeII RGCGCY 2 cut(s) 8, 195
HaeIII GGCC 3 cut(s) 834, 861, 959
HapII CCGG 2 cut(s) 165, 897
HhaI GCGC 4 cut(s) 7, 51, 111, 194
Hin1II CATG 7 cut(s) 391, 400, 422, 655, 761, 803, 1258
Hin6I GCGC 4 cut(s) 5, 49, 109, 192
HinP1I GCGC 4 cut(s) 5, 49, 109, 192
HincII GTYRAC 1 cut(s) 1007
HindII GTYRAC 1 cut(s) 1007
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 7 cut(s) 244, 282, 410, 554, 754, 973, 1130
HpaII CCGG 2 cut(s) 165, 897
HphI GGTGA 3 cut(s) 562, 763, 1139
Hpy166II GTNNAC 4 cut(s) 451, 459, 994, 1007
Hpy188I TCNGA 4 cut(s) 14, 117, 249, 300
Hpy188III TCNNGA 4 cut(s) 578, 758, 776, 970
Hpy8I GTNNAC 4 cut(s) 451, 459, 994, 1007
HpyAV CCTTC 3 cut(s) 773, 838, 970
HpyCH4III ACNGT 3 cut(s) 122, 796, 826
HpyCH4V TGCA 9 cut(s) 133, 205, 590, 611, 647, 799, 803, 872, 905
HpyF10VI GCNNNNNNNGC 5 cut(s) 638, 743, 809, 908, 1166
HpyF3I CTNAG 5 cut(s) 11, 381, 513, 1073, 1172
Hsp92II CATG 7 cut(s) 391, 400, 422, 655, 761, 803, 1258
HspAI GCGC 4 cut(s) 5, 49, 109, 192
KflI GGGWCCC 1 cut(s) 505
Kzo9I GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
LmnI GCTCC 4 cut(s) 34, 637, 742, 866
Lsp1109I GCAGC 6 cut(s) 217, 574, 856, 889, 1030, 1045
LweI GCATC 3 cut(s) 367, 634, 1141
MaeI CTAG 2 cut(s) 888, 1193
MaeIII GTNAC 2 cut(s) 1127, 1220
MalI GATC 8 cut(s) 16, 38, 253, 272, 366, 436, 518, 1242
MboI GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
MboII GAAGA 6 cut(s) 165, 280, 549, 1014, 1027, 1112
MfeI CAATTG 1 cut(s) 727
MflI RGATCY 4 cut(s) 14, 434, 516, 1240
MhlI GDGCHC 1 cut(s) 1254
MluCI AATT 2 cut(s) 727, 764
MlyI GAGTC 3 cut(s) 404, 967, 1124
MmeI TCCRAC 2 cut(s) 259, 278
MseI TTAA 5 cut(s) 213, 402, 486, 998, 1188
MspA1I CMGCKG 2 cut(s) 641, 717
MspI CCGG 2 cut(s) 165, 897
MspR9I CCNGG 3 cut(s) 196, 334, 523
MunI CAATTG 1 cut(s) 727
Mva1269I GAATGC 1 cut(s) 1080
MvaI CCWGG 3 cut(s) 196, 334, 523
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 5 cut(s) 638, 743, 809, 908, 1166
NdeII GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
NlaIII CATG 7 cut(s) 391, 400, 422, 655, 761, 803, 1258
NlaIV GGNNCC 3 cut(s) 457, 506, 507
NmeAIII GCCGAG 1 cut(s) 887
NmuCI GTSAC 1 cut(s) 1127
NspI RCATGY 2 cut(s) 400, 803
PaeI GCATGC 1 cut(s) 803
PagI TCATGA 1 cut(s) 757
PasI CCCWGGG 1 cut(s) 522
PciI ACATGT 1 cut(s) 396
PctI GAATGC 1 cut(s) 1080
PfeI GAWTC 4 cut(s) 244, 282, 554, 754
PinAI ACCGGT 1 cut(s) 896
PkrI GCNGC 7 cut(s) 9, 207, 589, 871, 904, 1045, 1060
PleI GAGTC 3 cut(s) 404, 967, 1124
PpsI GAGTC 3 cut(s) 404, 967, 1124
PpuMI RGGWCCY 1 cut(s) 505
PscI ACATGT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 3 cut(s) 194, 332, 521
PspGI CCWGG 3 cut(s) 194, 332, 521
PspN4I GGNNCC 3 cut(s) 457, 506, 507
PspPI GGNCC 5 cut(s) 456, 505, 833, 1067, 1137
PspPPI RGGWCCY 1 cut(s) 505
PsuI RGATCY 4 cut(s) 14, 434, 516, 1240
PvuII CAGCTG 2 cut(s) 641, 717
RsaI GTAC 2 cut(s) 386, 721
RsaNI GTAC 2 cut(s) 385, 720
SalI GTCGAC 1 cut(s) 1005
SaqAI TTAA 5 cut(s) 213, 402, 486, 998, 1188
SatI GCNGC 7 cut(s) 8, 206, 588, 870, 903, 1044, 1059
Sau3AI GATC 8 cut(s) 14, 36, 251, 270, 364, 434, 516, 1240
Sau96I GGNCC 5 cut(s) 456, 505, 833, 1067, 1137
SchI GAGTC 3 cut(s) 404, 967, 1124
ScrFI CCNGG 3 cut(s) 196, 334, 523
SduI GDGCHC 1 cut(s) 1254
SfaNI GCATC 3 cut(s) 367, 634, 1141
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 4 cut(s) 456, 505, 1067, 1137
SmlI CTYRAG 2 cut(s) 1010, 1132
SmoI CTYRAG 2 cut(s) 1010, 1132
SphI GCATGC 1 cut(s) 803
Sse9I AATT 2 cut(s) 727, 764
SsiI CCGC 4 cut(s) 21, 75, 307, 330
SspMI CTAG 2 cut(s) 888, 1193
StyD4I CCNGG 3 cut(s) 194, 332, 521
StyI CCWWGG 4 cut(s) 84, 462, 747, 1155
TaaI ACNGT 3 cut(s) 122, 796, 826
TaqI TCGA 2 cut(s) 39, 1006
TasI AATT 2 cut(s) 727, 764
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 4 cut(s) 244, 282, 554, 754
Tru1I TTAA 5 cut(s) 213, 402, 486, 998, 1188
Tru9I TTAA 5 cut(s) 213, 402, 486, 998, 1188
TscAI CASTG 2 cut(s) 363, 1099
TseFI GTSAC 1 cut(s) 1127
TseI GCWGC 7 cut(s) 7, 205, 587, 869, 902, 1043, 1058
Tsp45I GTSAC 1 cut(s) 1127
TspDTI ATGAA 3 cut(s) 746, 1113, 1227
TspGWI ACGGA 3 cut(s) 21, 334, 953
TspRI CASTG 2 cut(s) 363, 1099
VpaK11BI GGWCC 4 cut(s) 456, 505, 1067, 1137
XapI RAATTY 1 cut(s) 764
XceI RCATGY 2 cut(s) 400, 803
XmiI GTMKAC 1 cut(s) 1006
XspI CTAG 2 cut(s) 888, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.