FvH4_3g14640

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
9014415 .. 9018924
4510 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14640.t1

Sequence Viewer

Length: 1281 bp
ATGGCGCTGCTCAGATCCACCACCGCCGCCTCTGCTCCGTTGTTCGAAGCCTCCCGCTCCGACCTCTCTTTCTCCGCCTCCGCTTCCTCAAAGGTGTCAAGCGTTGGGTTTGGGCGTAATTTGAACTGTTCAAAGGTGCAATCATCCATCTTTGGGGCTTCTATCTCAACCGGCTCGTCTTCTTTACAGACAAGTAGTGCCAGGAGTGTCCAGCCTATTAAAGCCACAGCCACCGAAATTCCACCCACGTATCAGAGATCAGGGAGCAGTGGGAAGATCAAAATTGGAATCAATGGTTTTGGTCGGATTGGGCGGTTGGTTCTACGAATAGCGACTGCCAGGGATGATATAGAAGTGGTGGCAGTGAATGATCCTATGGTTGATCCTAAGTACATGGCTTACATGTTTAAGTACGACTCTACACATGGAGTTTTTGATGGTTCTATCAGTGTTGTGGATGACTCTACCTTGGAAATAAATGGAAAGCATATTAAAGTTGAGAGCAAAAGGGACCCTGCAGAGATCCCCTGGGGAAGTTACGGGGTTGAGTATGTAGTGGAATCTTCTGGGATTTTCACCAATCTTGAGAAGGCTGCATTACATAAAAAGGGTGGTGCAAAGAAAGTGGTTATATCAGCTCCATCAGCTGATGCACCCATGTTTGTCGTAGGAGTGAATGAGAATACATACAAGCCAAATATGGACATAGTTTCTAATGCAAGCTGTACCACAAATTGCCTTGCTCCACTTGCCAAGGTGATTCATGAGGAATTTGGTATTCTCGAAGGTCTGATGACGACTGTGCATGCAACTACAGCAACACAGAAAACAGTGGATGGCCCATCAAAGAAGGATTGGAGAGGTGGCCGAGGAGCTGCTCAGAATATCATTCCTAGTTCAACCGGTGCTGCAAAGGCTGTTGGAAAAGTTCTACCTGAACTCAATGGAAAGCTGACTGGTATGGCCTTCCGCGTCCCAACCCCTAATGTATCTGTTGTGGACTTAACTTGTCGACTTGAGAAGGGTGGTTCTTATGAGGATGTCAAAGCAGCCATCAGGTATGCTGCTGATGGGCCACTTAGAGGCATTCTGGGATACACCGATGAAGATGTGGTTTCCAATGATTTTGTTGGTGACTCAAGGTCCAGCATCTTTGATGCCAAGGCTGGATTAGCACTTAGTTCCACCTTTGTTAAGCTTGTTTCATGGTATGACAATGAATGGGGTTACAGCAACCGAGTTTTGGACCTCATAGAGCACATGGCATTGGTGGCAGCATAA

Protein Analysis

427

Amino Acids

45.15

Weight (kDa)

8.18

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 93 - 194 4.6e-38 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 247 - 404 1.3e-68 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 1 cut(s) 1012
AccII CGCG 1 cut(s) 972
AciI CCGC 7 cut(s) 24, 27, 55, 75, 81, 313, 970
AclWI GGATC 4 cut(s) 9, 365, 377, 517
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 2 cut(s) 237, 770
AfaI GTAC 3 cut(s) 392, 413, 727
AfiI CCNNNNNNNGG 3 cut(s) 153, 1082, 1243
AflIII ACRYGT 1 cut(s) 402
AgeI ACCGGT 1 cut(s) 902
AgsI TTSAA 3 cut(s) 124, 132, 900
AhdI GACNNNNNGTC 1 cut(s) 1141
AjnI CCWGG 3 cut(s) 200, 338, 527
AluBI AGCT 6 cut(s) 638, 647, 723, 875, 952, 1198
AluI AGCT 6 cut(s) 638, 647, 723, 875, 952, 1198
Alw21I GWGCWC 1 cut(s) 1260
AlwI GGATC 4 cut(s) 9, 365, 377, 517
AoxI GGCC 4 cut(s) 838, 865, 963, 1073
ApeKI GCWGC 7 cut(s) 7, 593, 875, 908, 1049, 1064, 1274
ApoI RAATTY 2 cut(s) 237, 770
AsiGI ACCGGT 1 cut(s) 902
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 5 cut(s) 511, 839, 1073, 1143, 1246
AsuHPI GGTGA 3 cut(s) 568, 769, 1145
AsuII TTCGAA 1 cut(s) 45
AvaII GGWCC 3 cut(s) 511, 1143, 1246
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 1260
BbvI GCAGC 5 cut(s) 580, 862, 895, 1051, 1061
BccI CCATC 7 cut(s) 155, 431, 649, 830, 850, 1061, 1064
BciT130I CCWGG 3 cut(s) 202, 340, 529
BciVI GTATCC 1 cut(s) 1088
BfaI CTAG 1 cut(s) 894
BfmI CTRYAG 2 cut(s) 516, 813
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 1088
BisI GCNGC 8 cut(s) 8, 27, 594, 876, 909, 1050, 1065, 1275
BlsI GCNGC 8 cut(s) 9, 28, 595, 877, 910, 1051, 1066, 1276
Bme1390I CCNGG 3 cut(s) 202, 340, 529
Bme18I GGWCC 3 cut(s) 511, 1143, 1246
BmeRI GACNNNNNGTC 1 cut(s) 1141
BmgT120I GGNCC 5 cut(s) 511, 839, 1073, 1143, 1246
BmiI GGNNCC 2 cut(s) 512, 513
BmrFI CCNGG 3 cut(s) 202, 340, 529
BmsI GCATC 3 cut(s) 640, 1147, 1158
BpiI GAAGAC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 3 cut(s) 605, 1037, 1123
BsaAI YACGTR 1 cut(s) 249
BsaJI CCNNGG 7 cut(s) 339, 468, 527, 528, 753, 868, 1161
BsaWI WCCGGW 1 cut(s) 902
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 1082, 1243
Bse118I RCCGGY 2 cut(s) 170, 902
Bse1I ACTGG 1 cut(s) 961
BseBI CCWGG 3 cut(s) 202, 340, 529
BseDI CCNNGG 7 cut(s) 339, 468, 527, 528, 753, 868, 1161
BseGI GGATG 5 cut(s) 143, 349, 463, 841, 1045
BseLI CCNNNNNNNGG 3 cut(s) 153, 1082, 1243
BseMII CTCAG 2 cut(s) 25, 893
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 1 cut(s) 885
BseXI GCAGC 5 cut(s) 580, 862, 895, 1051, 1061
Bsh1236I CGCG 1 cut(s) 972
BshFI GGCC 4 cut(s) 840, 867, 965, 1075
BshTI ACCGGT 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 1260
BsiSI CCGG 2 cut(s) 171, 903
BslFI GGGAC 2 cut(s) 524, 959
BslI CCNNNNNNNGG 3 cut(s) 153, 1082, 1243
BsmFI GGGAC 2 cut(s) 524, 959
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 4 cut(s) 840, 867, 965, 1075
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 1260
Bsp143I GATC 6 cut(s) 14, 257, 276, 370, 382, 522
BspACI CCGC 7 cut(s) 24, 27, 55, 75, 81, 313, 970
BspANI GGCC 4 cut(s) 840, 867, 965, 1075
BspCNI CTCAG 2 cut(s) 24, 892
BspFNI CGCG 1 cut(s) 972
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 512, 513
BspMAI CTGCAG 1 cut(s) 520
BspPI GGATC 4 cut(s) 9, 365, 377, 517
BspT104I TTCGAA 1 cut(s) 45
BsrBI CCGCTC 1 cut(s) 57
BsrFI RCCGGY 2 cut(s) 170, 902
BsrI ACTGG 1 cut(s) 961
BssAI RCCGGY 2 cut(s) 170, 902
BssECI CCNNGG 7 cut(s) 339, 468, 527, 528, 753, 868, 1161
BssMI GATC 6 cut(s) 14, 257, 276, 370, 382, 522
BssT1I CCWWGG 3 cut(s) 468, 753, 1161
Bst2UI CCWGG 3 cut(s) 202, 340, 529
Bst4CI ACNGT 3 cut(s) 128, 802, 832
BstBAI YACGTR 1 cut(s) 249
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 721, 807
BstDEI CTNAG 5 cut(s) 11, 387, 879, 1079, 1178
BstF5I GGATG 5 cut(s) 143, 349, 463, 841, 1045
BstFNI CGCG 1 cut(s) 972
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 6 cut(s) 17, 260, 279, 373, 385, 525
BstMBI GATC 6 cut(s) 14, 257, 276, 370, 382, 522
BstMWI GCNNNNNNNGC 7 cut(s) 32, 644, 749, 815, 914, 1172, 1271
BstNI CCWGG 3 cut(s) 202, 340, 529
BstNSI RCATGY 2 cut(s) 406, 809
BstSCI CCNGG 3 cut(s) 200, 338, 527
BstSFI CTRYAG 2 cut(s) 516, 813
BstUI CGCG 1 cut(s) 972
BstV1I GCAGC 5 cut(s) 580, 862, 895, 1051, 1061
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 14, 522
BstYI RGATCY 2 cut(s) 14, 522
BsuI GTATCC 1 cut(s) 1088
BsuRI GGCC 4 cut(s) 840, 867, 965, 1075
BtsCI GGATG 5 cut(s) 143, 349, 463, 841, 1045
BtsI GCAGTG 2 cut(s) 274, 369
BtsIMutI CAGTG 4 cut(s) 274, 369, 454, 837
Cac8I GCNNGC 2 cut(s) 721, 807
CciI TCATGA 1 cut(s) 763
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 170, 902
Cfr13I GGNCC 5 cut(s) 511, 839, 1073, 1143, 1246
CseI GACGC 1 cut(s) 961
Csp6I GTAC 3 cut(s) 391, 412, 726
CspAI ACCGGT 1 cut(s) 902
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 8 cut(s) 394, 403, 425, 658, 764, 806, 1206, 1261
CviQI GTAC 3 cut(s) 391, 412, 726
DdeI CTNAG 5 cut(s) 11, 387, 879, 1079, 1178
DpnI GATC 6 cut(s) 16, 259, 278, 372, 384, 524
DpnII GATC 6 cut(s) 14, 257, 276, 370, 382, 522
DriI GACNNNNNGTC 1 cut(s) 1141
EaeI YGGCCR 1 cut(s) 865
Eam1105I GACNNNNNGTC 1 cut(s) 1141
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 468, 753, 1161
Eco47I GGWCC 3 cut(s) 511, 1143, 1246
EcoO109I RGGNCCY 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 200, 338, 527
EcoT14I CCWWGG 3 cut(s) 468, 753, 1161
ErhI CCWWGG 3 cut(s) 468, 753, 1161
FaeI CATG 8 cut(s) 397, 406, 428, 661, 767, 809, 1209, 1264
FaqI GGGAC 2 cut(s) 524, 959
FatI CATG 8 cut(s) 393, 402, 424, 657, 763, 805, 1205, 1260
FauI CCCGC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 1012
Fnu4HI GCNGC 8 cut(s) 8, 27, 594, 876, 909, 1050, 1065, 1275
FokI GGATG 5 cut(s) 130, 356, 470, 848, 1052
Fsp4HI GCNGC 8 cut(s) 8, 27, 594, 876, 909, 1050, 1065, 1275
FspBI CTAG 1 cut(s) 894
GlaI GCGC 1 cut(s) 6
GluI GCNGC 8 cut(s) 8, 27, 594, 876, 909, 1050, 1065, 1275
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 840, 867, 965, 1075
HapII CCGG 2 cut(s) 171, 903
HgaI GACGC 1 cut(s) 961
HhaI GCGC 1 cut(s) 7
Hin1II CATG 8 cut(s) 397, 406, 428, 661, 767, 809, 1209, 1264
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 1013
HindII GTYRAC 1 cut(s) 1013
HindIII AAGCTT 1 cut(s) 1196
HinfI GANTC 6 cut(s) 288, 416, 461, 560, 760, 1136
HpaII CCGG 2 cut(s) 171, 903
HphI GGTGA 3 cut(s) 568, 769, 1145
Hpy166II GTNNAC 2 cut(s) 1000, 1013
Hpy188I TCNGA 6 cut(s) 14, 61, 255, 306, 792, 882
Hpy188III TCNNGA 3 cut(s) 584, 764, 782
Hpy8I GTNNAC 2 cut(s) 1000, 1013
HpyAV CCTTC 5 cut(s) 583, 779, 844, 976, 1015
HpyCH4III ACNGT 3 cut(s) 128, 802, 832
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 9 cut(s) 139, 518, 596, 617, 653, 719, 805, 809, 911
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 644, 749, 815, 914, 1172, 1271
HpyF3I CTNAG 5 cut(s) 11, 387, 879, 1079, 1178
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 8 cut(s) 397, 406, 428, 661, 767, 809, 1209, 1264
HspAI GCGC 1 cut(s) 5
KflI GGGWCCC 1 cut(s) 511
Kzo9I GATC 6 cut(s) 14, 257, 276, 370, 382, 522
LmnI GCTCC 6 cut(s) 40, 62, 264, 643, 748, 872
Lsp1109I GCAGC 5 cut(s) 580, 862, 895, 1051, 1061
LweI GCATC 3 cut(s) 640, 1147, 1158
MaeI CTAG 1 cut(s) 894
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 536, 1133, 1226
MalI GATC 6 cut(s) 16, 259, 278, 372, 384, 524
MbiI CCGCTC 1 cut(s) 57
MboI GATC 6 cut(s) 14, 257, 276, 370, 382, 522
MboII GAAGA 4 cut(s) 171, 286, 555, 1118
MflI RGATCY 2 cut(s) 14, 522
MhlI GDGCHC 1 cut(s) 1260
MluCI AATT 5 cut(s) 118, 237, 282, 733, 770
MlyI GAGTC 3 cut(s) 410, 455, 1130
MmeI TCCRAC 3 cut(s) 84, 284, 901
MseI TTAA 5 cut(s) 219, 408, 492, 1004, 1194
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 2 cut(s) 171, 903
MspR9I CCNGG 3 cut(s) 202, 340, 529
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 3 cut(s) 202, 340, 529
MvnI CGCG 1 cut(s) 972
MwoI GCNNNNNNNGC 7 cut(s) 32, 644, 749, 815, 914, 1172, 1271
NdeII GATC 6 cut(s) 14, 257, 276, 370, 382, 522
NlaIII CATG 8 cut(s) 397, 406, 428, 661, 767, 809, 1209, 1264
NlaIV GGNNCC 2 cut(s) 512, 513
NmeAIII GCCGAG 1 cut(s) 893
NmuCI GTSAC 1 cut(s) 1133
NspI RCATGY 2 cut(s) 406, 809
NspV TTCGAA 1 cut(s) 45
PaeI GCATGC 1 cut(s) 809
PagI TCATGA 1 cut(s) 763
PasI CCCWGGG 1 cut(s) 528
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 1086
PfeI GAWTC 3 cut(s) 288, 560, 760
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 8 cut(s) 9, 28, 595, 877, 910, 1051, 1066, 1276
PleI GAGTC 3 cut(s) 410, 455, 1130
PpsI GAGTC 3 cut(s) 410, 455, 1130
Ppu21I YACGTR 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 511
PscI ACATGT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 3 cut(s) 200, 338, 527
PspGI CCWGG 3 cut(s) 200, 338, 527
PspN4I GGNNCC 2 cut(s) 512, 513
PspPI GGNCC 5 cut(s) 511, 839, 1073, 1143, 1246
PspPPI RGGWCCY 1 cut(s) 511
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 2 cut(s) 14, 522
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 392, 413, 727
RsaNI GTAC 3 cut(s) 391, 412, 726
SalI GTCGAC 1 cut(s) 1011
SaqAI TTAA 5 cut(s) 219, 408, 492, 1004, 1194
SatI GCNGC 8 cut(s) 8, 27, 594, 876, 909, 1050, 1065, 1275
Sau3AI GATC 6 cut(s) 14, 257, 276, 370, 382, 522
Sau96I GGNCC 5 cut(s) 511, 839, 1073, 1143, 1246
SchI GAGTC 3 cut(s) 410, 455, 1130
ScrFI CCNGG 3 cut(s) 202, 340, 529
SduI GDGCHC 1 cut(s) 1260
SfaNI GCATC 3 cut(s) 640, 1147, 1158
SfcI CTRYAG 2 cut(s) 516, 813
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 3 cut(s) 511, 1143, 1246
SmlI CTYRAG 3 cut(s) 584, 1016, 1138
SmoI CTYRAG 3 cut(s) 584, 1016, 1138
SphI GCATGC 1 cut(s) 809
Sse9I AATT 5 cut(s) 118, 237, 282, 733, 770
SsiI CCGC 7 cut(s) 24, 27, 55, 75, 81, 313, 970
SspMI CTAG 1 cut(s) 894
StyD4I CCNGG 3 cut(s) 200, 338, 527
StyI CCWWGG 3 cut(s) 468, 753, 1161
TaaI ACNGT 3 cut(s) 128, 802, 832
TaiI ACGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 45, 783, 1012
TasI AATT 5 cut(s) 118, 237, 282, 733, 770
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 3 cut(s) 288, 560, 760
Tru1I TTAA 5 cut(s) 219, 408, 492, 1004, 1194
Tru9I TTAA 5 cut(s) 219, 408, 492, 1004, 1194
TscAI CASTG 4 cut(s) 274, 369, 454, 837
TseFI GTSAC 1 cut(s) 1133
TseI GCWGC 7 cut(s) 7, 593, 875, 908, 1049, 1064, 1274
Tsp45I GTSAC 1 cut(s) 1133
TspDTI ATGAA 4 cut(s) 752, 1119, 1194, 1233
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 4 cut(s) 274, 369, 454, 837
VpaK11BI GGWCC 3 cut(s) 511, 1143, 1246
XapI RAATTY 2 cut(s) 237, 770
XceI RCATGY 2 cut(s) 406, 809
XmiI GTMKAC 1 cut(s) 1012
XspI CTAG 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.