Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Reverse (-)

7286500 .. 7291240

Gene Structure 4741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G131700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCGGCTTCTTCTCTACTCAGATCTACAGCCTCAGCTCCGTTGATCGAAGCCTCGCGTGCTGAGCTCGCGGCCTCGTCCTCCGCTTCTTTCAAGGTGTCAAGCGTTGGATTTGGTCGCAATCTGAACTGCCCAAAGGTGCAATCAAGCATATTTGGCACTTCCATCCCAAGCGGCTCGTCTTCTTTACAGATATGTAGCGCCAGGAGTGTCCAACCTATCAAAGCCACAGCCACTGAGCTACCACCCACAATCCAGAGATCAGGGAGTGGTGGGAAGACAAAGGTTGGGATCAATGGTTTTGGTCGGATTGGAAGGTTGGTTCTCCGAGTAGCAACCTCTAGAGATGATATAGAAGTGGTTGCGGTCAATGATCCTTTAGTTGATGCTAAGTACATGGCTTACATGTTTAAGTATGACTCCACGCATGGAGTATTCGACGGATCAATTAGTGTTGTTGATGATTCCACCTTGGAAATAAATGGGAAGACGATTAAAGTTGTGAGCAAAAGAGATCCTGCGGAGATCCCTTGGGGTGATTATGGCGTTGAGTATGTTGTTGAATCTTCTGGGATTTTTACAACAGTTGAGAAGGCTTCATTACATAAAAAGGGTGGTGCAAAGAAAGTGGTAATATCAGCTCCATCAGCAGATGCACCCATGTTTGTGGTAGGAGTAAATGAGCGTACATACAAGCCAAATATGGACATCGTTTCTAATGCAAGCTGTACTACCAACTGCCTTGCTCCTCTTGCCAAGGTGATTCATGAGGAATTTGGTATTCTTGAAGGTTTGATGACAACTGTGCATGCAACTACAGCAACACAGAAGACAGTTGATGGCCCTTCGATGAAGGATTGGAGAGGGGGCCGAGGAGCTGGACAGAATATCATCCCAAGTTCAACTGGTGCTGCAAAGGCTGTTGGAAAAGTTCTACCAGAACTGAATGGAAAGCTTACTGGTATGGCCTTCCGTGTCCCAACTCCTAATGTATCTGTGGTGGACTTAACTTGTCGACTTGAGAAGACTTCTTCTTATGAGGATGTCAAAGCAGCCATCAGGTATGCTGCTGATGGGCCACTTAGAGGCATCCTTGGTTACACTGAAGAAGATGTAGTCTCCAATGATTTTGTTGGTGACTCAAGGTCCAGTATATTTGATGCCAAGGCTGGGTTAGCACTTAGTTCTTCCTTCGTTAAGCTTGTTTCGTGGTACGACAATGAGTGGGGATACAGCAACCGAGTTTTGGACCTCATAGAGCACATGGCATTGGTGGCAGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

429

Amino Acids

45.23

Weight (kDa)

8.14

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1015
AccII	CGCG	2 cut(s)	58, 71
AciI	CCGC	6 cut(s)	5, 71, 84, 174, 365, 521
AclWI	GGATC	5 cut(s)	299, 368, 451, 509, 520
AcsI	RAATTY	1 cut(s)	773
AcuI	CTGAAG	1 cut(s)	1125
AfaI	GTAC	4 cut(s)	395, 688, 730, 1214
AfiI	CCNNNNNNNGG	3 cut(s)	1085, 1170, 1246
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	94, 563, 788, 903
AhdI	GACNNNNNGTC	1 cut(s)	1144
AjnI	CCWGG	1 cut(s)	203
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	8 cut(s)	38, 67, 241, 641, 726, 878, 955, 1201
AluI	AGCT	8 cut(s)	38, 67, 241, 641, 726, 878, 955, 1201
Alw21I	GWGCWC	2 cut(s)	69, 1263
Alw26I	GTCTC	1 cut(s)	1123
AlwI	GGATC	5 cut(s)	299, 368, 451, 509, 520
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	5 cut(s)	72, 841, 868, 966, 1076
ApeKI	GCWGC	4 cut(s)	911, 1052, 1067, 1277
ApoI	RAATTY	1 cut(s)	773
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	5 cut(s)	842, 868, 1076, 1146, 1249
AsuHPI	GGTGA	3 cut(s)	548, 772, 1148
AvaII	GGWCC	2 cut(s)	1146, 1249
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	5 cut(s)	174, 284, 494, 836, 1031
Bbv12I	GWGCWC	2 cut(s)	69, 1263
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	898, 1054, 1064
BccI	CCATC	5 cut(s)	173, 652, 833, 1064, 1067
BciT130I	CCWGG	1 cut(s)	205
BciVI	GTATCC	1 cut(s)	1223
BcoDI	GTCTC	1 cut(s)	1123
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	27, 816
BfoI	RGCGCY	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	1223
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	7 cut(s)	6, 72, 175, 912, 1053, 1068, 1278
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	7 cut(s)	7, 73, 176, 913, 1054, 1069, 1279
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	2 cut(s)	1146, 1249
BmeRI	GACNNNNNGTC	1 cut(s)	1144
BmgT120I	GGNCC	5 cut(s)	842, 868, 1076, 1146, 1249
BmiI	GGNNCC	1 cut(s)	869
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	4 cut(s)	376, 643, 1098, 1150
BpiI	GAAGAC	5 cut(s)	174, 284, 494, 836, 1031
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	1040, 1126
BsaJI	CCNNGG	6 cut(s)	471, 530, 756, 871, 1093, 1164
Bsc4I	CCNNNNNNNGG	3 cut(s)	1085, 1170, 1246
Bse1I	ACTGG	3 cut(s)	910, 964, 1149
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	6 cut(s)	471, 530, 756, 871, 1093, 1164
BseGI	GGATG	4 cut(s)	165, 891, 1048, 1089
BseLI	CCNNNNNNNGG	3 cut(s)	1085, 1170, 1246
BseMII	CTCAG	4 cut(s)	34, 48, 54, 228
BseNI	ACTGG	3 cut(s)	910, 964, 1149
BseRI	GAGGAG	2 cut(s)	738, 888
BseXI	GCAGC	3 cut(s)	898, 1054, 1064
BseYI	CCCAGC	1 cut(s)	1169
Bsh1236I	CGCG	2 cut(s)	58, 71
BshFI	GGCC	5 cut(s)	74, 843, 870, 968, 1078
BsiHKAI	GWGCWC	2 cut(s)	69, 1263
BslFI	GGGAC	1 cut(s)	962
BslI	CCNNNNNNNGG	3 cut(s)	1085, 1170, 1246
BsmAI	GTCTC	1 cut(s)	1123
BsmFI	GGGAC	1 cut(s)	962
BsnI	GGCC	5 cut(s)	74, 843, 870, 968, 1078
Bsp1286I	GDGCHC	2 cut(s)	69, 1263
Bsp143I	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	6 cut(s)	5, 71, 84, 174, 365, 521
BspANI	GGCC	5 cut(s)	74, 843, 870, 968, 1078
BspCNI	CTCAG	4 cut(s)	33, 47, 55, 229
BspFNI	CGCG	2 cut(s)	58, 71
BspHI	TCATGA	2 cut(s)	766, 1283
BspLI	GGNNCC	1 cut(s)	869
BspPI	GGATC	5 cut(s)	299, 368, 451, 509, 520
BsrI	ACTGG	3 cut(s)	910, 964, 1149
BssECI	CCNNGG	6 cut(s)	471, 530, 756, 871, 1093, 1164
BssMI	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
BssT1I	CCWWGG	5 cut(s)	471, 530, 756, 1093, 1164
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	3 cut(s)	586, 805, 835
BstC8I	GCNNGC	4 cut(s)	60, 69, 724, 810
BstDEI	CTNAG	7 cut(s)	20, 34, 63, 237, 390, 1082, 1181
BstF5I	GGATG	4 cut(s)	165, 891, 1048, 1089
BstFNI	CGCG	2 cut(s)	58, 71
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	8 cut(s)	26, 48, 263, 294, 376, 446, 517, 528
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	2 cut(s)	409, 812
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	2 cut(s)	27, 816
BstUI	CGCG	2 cut(s)	58, 71
BstV1I	GCAGC	3 cut(s)	898, 1054, 1064
BstV2I	GAAGAC	5 cut(s)	174, 284, 494, 836, 1031
BstX2I	RGATCY	3 cut(s)	23, 514, 525
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	3 cut(s)	23, 514, 525
BsuI	GTATCC	1 cut(s)	1223
BsuRI	GGCC	5 cut(s)	74, 843, 870, 968, 1078
BtsCI	GGATG	4 cut(s)	165, 891, 1048, 1089
BtsIMutI	CAGTG	2 cut(s)	234, 1101
Cac8I	GCNNGC	4 cut(s)	60, 69, 724, 810
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	2 cut(s)	766, 1283
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	5 cut(s)	842, 868, 1076, 1146, 1249
Csp6I	GTAC	4 cut(s)	394, 687, 729, 1213
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	8 cut(s)	397, 406, 428, 661, 767, 809, 1264, 1284
CviQI	GTAC	4 cut(s)	394, 687, 729, 1213
DdeI	CTNAG	7 cut(s)	20, 34, 63, 237, 390, 1082, 1181
DpnI	GATC	8 cut(s)	25, 47, 262, 293, 375, 445, 516, 527
DpnII	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
DriI	GACNNNNNGTC	1 cut(s)	1144
Eam1105I	GACNNNNNGTC	1 cut(s)	1144
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	5 cut(s)	471, 530, 756, 1093, 1164
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	1146, 1249
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	1125
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	5 cut(s)	471, 530, 756, 1093, 1164
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	5 cut(s)	471, 530, 756, 1093, 1164
FaeI	CATG	8 cut(s)	400, 409, 431, 664, 770, 812, 1267, 1287
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	8 cut(s)	396, 405, 427, 660, 766, 808, 1263, 1283
FblI	GTMKAC	1 cut(s)	1015
Fnu4HI	GCNGC	7 cut(s)	6, 72, 175, 912, 1053, 1068, 1278
FokI	GGATG	4 cut(s)	152, 878, 1055, 1076
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	7 cut(s)	6, 72, 175, 912, 1053, 1068, 1278
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	7 cut(s)	6, 72, 175, 912, 1053, 1068, 1278
GsaI	CCCAGC	1 cut(s)	1173
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	74, 843, 870, 968, 1078
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	8 cut(s)	400, 409, 431, 664, 770, 812, 1267, 1287
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	1016
HindII	GTYRAC	1 cut(s)	1016
HindIII	AAGCTT	2 cut(s)	953, 1199
HinfI	GANTC	5 cut(s)	419, 464, 563, 763, 1139
HphI	GGTGA	3 cut(s)	548, 772, 1148
Hpy166II	GTNNAC	2 cut(s)	1003, 1016
Hpy188I	TCNGA	4 cut(s)	23, 126, 309, 329
Hpy188III	TCNNGA	5 cut(s)	256, 342, 767, 785, 1284
Hpy8I	GTNNAC	2 cut(s)	1003, 1016
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	7 cut(s)	309, 586, 782, 847, 855, 979, 1201
HpyCH4III	ACNGT	3 cut(s)	586, 805, 835
HpyCH4V	TGCA	7 cut(s)	142, 620, 656, 722, 808, 812, 914
HpyF3I	CTNAG	7 cut(s)	20, 34, 63, 237, 390, 1082, 1181
Hsp92II	CATG	8 cut(s)	400, 409, 431, 664, 770, 812, 1267, 1287
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
LmnI	GCTCC	4 cut(s)	43, 646, 751, 875
Lsp1109I	GCAGC	3 cut(s)	898, 1054, 1064
LweI	GCATC	4 cut(s)	376, 643, 1098, 1150
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	1097, 1136
MalI	GATC	8 cut(s)	25, 47, 262, 293, 375, 445, 516, 527
MboI	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
MflI	RGATCY	3 cut(s)	23, 514, 525
MhlI	GDGCHC	2 cut(s)	69, 1263
MluCI	AATT	2 cut(s)	447, 773
MlyI	GAGTC	2 cut(s)	413, 1133
MmeI	TCCRAC	4 cut(s)	88, 238, 287, 904
MseI	TTAA	4 cut(s)	411, 495, 1007, 1197
MslI	CAYNNNNRTG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	58, 71
NdeII	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
NlaIII	CATG	8 cut(s)	400, 409, 431, 664, 770, 812, 1267, 1287
NlaIV	GGNNCC	1 cut(s)	869
NmeAIII	GCCGAG	1 cut(s)	896
NmuCI	GTSAC	1 cut(s)	1136
NspI	RCATGY	2 cut(s)	409, 812
PaeI	GCATGC	1 cut(s)	812
PagI	TCATGA	2 cut(s)	766, 1283
PciI	ACATGT	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	464, 563, 763
PkrI	GCNGC	7 cut(s)	7, 73, 176, 913, 1054, 1069, 1279
PleI	GAGTC	2 cut(s)	413, 1133
PpsI	GAGTC	2 cut(s)	413, 1133
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	1169
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	869
PspPI	GGNCC	5 cut(s)	842, 868, 1076, 1146, 1249
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	3 cut(s)	23, 514, 525
RsaI	GTAC	4 cut(s)	395, 688, 730, 1214
RsaNI	GTAC	4 cut(s)	394, 687, 729, 1213
RseI	CAYNNNNRTG	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	1014
SaqAI	TTAA	4 cut(s)	411, 495, 1007, 1197
SatI	GCNGC	7 cut(s)	6, 72, 175, 912, 1053, 1068, 1278
Sau3AI	GATC	8 cut(s)	23, 45, 260, 291, 373, 443, 514, 525
Sau96I	GGNCC	5 cut(s)	842, 868, 1076, 1146, 1249
SchI	GAGTC	2 cut(s)	413, 1133
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	69, 1263
SfaNI	GCATC	4 cut(s)	376, 643, 1098, 1150
SfcI	CTRYAG	2 cut(s)	27, 816
SinI	GGWCC	2 cut(s)	1146, 1249
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	2 cut(s)	1019, 1141
SmoI	CTYRAG	2 cut(s)	1019, 1141
SphI	GCATGC	1 cut(s)	812
Sse9I	AATT	2 cut(s)	447, 773
SsiI	CCGC	6 cut(s)	5, 71, 84, 174, 365, 521
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	5 cut(s)	471, 530, 756, 1093, 1164
TaaI	ACNGT	3 cut(s)	586, 805, 835
TaqI	TCGA	4 cut(s)	48, 438, 848, 1015
TasI	AATT	2 cut(s)	447, 773
TatI	WGTACW	2 cut(s)	393, 728
TauI	GCSGC	3 cut(s)	8, 74, 177
TfiI	GAWTC	3 cut(s)	464, 563, 763
Tru1I	TTAA	4 cut(s)	411, 495, 1007, 1197
Tru9I	TTAA	4 cut(s)	411, 495, 1007, 1197
TscAI	CASTG	2 cut(s)	241, 1108
TseFI	GTSAC	1 cut(s)	1136
TseI	GCWGC	4 cut(s)	911, 1052, 1067, 1277
Tsp45I	GTSAC	1 cut(s)	1136
TspDTI	ATGAA	3 cut(s)	588, 755, 866
TspGWI	ACGGA	3 cut(s)	30, 456, 962
TspRI	CASTG	2 cut(s)	241, 1108
VpaK11BI	GGWCC	2 cut(s)	1146, 1249
XapI	RAATTY	1 cut(s)	773
XbaI	TCTAGA	1 cut(s)	341
XceI	RCATGY	2 cut(s)	409, 812
XmiI	GTMKAC	1 cut(s)	1015
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.