Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Reverse (-)

19030099 .. 19033978

Gene Structure 3880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG172200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGCTGCTCAGATCCACCGCCTCTGCTCCGTTGATCGAAGCCTCGCGCACCGACCTCTCTTTCTCCACCTCCGCTTCCTCCAAGGCTTACATGTTTAAGTATGACTCTACACATGGAGTGTTTGATGGATCTATTAGTGTTGTGGACGGGTCCACCTTGGAAATAAATGGGAAGCAGATTAAAGTTGAGAGCAAAAGGGACCCTGCTGAGATCCCCTGGGGAAGTTATGGGGTGGAGTATGTAGTGGAATCTTCTGGGATTTTCACCACTCTTGATAAGGCTGCATTACATAAAAAGGGTGGTGCAAAAAAAGTGCAACACAAAAAACAGTTGATGGCCCATCAAGGAAGGACTGGAGAGGTGGCCGAGGAGCTGCACAGAATATCATTCCTAGTTCAACCGGTGCTGCAAAGGTATGCTGCTGATGGACCACTTAGAGGCATTCTTGGATACACTGATGAAGATGTGGTTTCCAATGATTTTGTTGGTGACTCAAGGTCCAGTATCTTTGATGCCAAGGCTGGATTAGCACTTAGTTCCTCCTTTGTTAAGCTAGTTTCGTGGTATGACAATGAATGGGGTTACAGCAACCGAGTTTTAGATCTCATAGAGCACATGGCATTGGTGGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

212

Amino Acids

23.14

Weight (kDa)

6.07

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	24 - 91	7.6e-19	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	137 - 190	8.7e-12	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	21, 75
AclWI	GGATC	3 cut(s)	9, 139, 208
AcoI	YGGCCR	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	401
AhdI	GACNNNNNGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	376, 556
AluI	AGCT	2 cut(s)	376, 556
Alw21I	GWGCWC	1 cut(s)	618
AlwI	GGATC	3 cut(s)	9, 139, 208
AoxI	GGCC	2 cut(s)	339, 366
ApeKI	GCWGC	5 cut(s)	7, 284, 376, 409, 422
AsiGI	ACCGGT	1 cut(s)	403
AspLEI	GCGC	2 cut(s)	7, 51
AspS9I	GGNCC	5 cut(s)	153, 202, 340, 431, 501
AsuHPI	GGTGA	2 cut(s)	259, 503
AvaII	GGWCC	4 cut(s)	153, 202, 431, 501
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	271, 363, 396, 409
BccI	CCATC	4 cut(s)	122, 331, 351, 422
BciT130I	CCWGG	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	395, 557
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	5 cut(s)	8, 285, 377, 410, 423
BlsI	GCNGC	5 cut(s)	9, 286, 378, 411, 424
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	4 cut(s)	153, 202, 431, 501
BmeRI	GACNNNNNGTC	1 cut(s)	499
BmgT120I	GGNCC	5 cut(s)	153, 202, 340, 431, 501
BmiI	GGNNCC	3 cut(s)	154, 203, 204
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	481
BsaJI	CCNNGG	6 cut(s)	84, 159, 218, 219, 369, 519
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	361, 504
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	6 cut(s)	84, 159, 218, 219, 369, 519
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	25, 201
BseNI	ACTGG	2 cut(s)	361, 504
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	271, 363, 396, 409
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	341, 368
BshTI	ACCGGT	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	341, 368
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	5 cut(s)	14, 36, 131, 213, 604
BspACI	CCGC	2 cut(s)	21, 75
BspANI	GGCC	2 cut(s)	341, 368
BspCNI	CTCAG	2 cut(s)	24, 202
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	154, 203, 204
BspPI	GGATC	3 cut(s)	9, 139, 208
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	361, 504
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	6 cut(s)	84, 159, 218, 219, 369, 519
BssMI	GATC	5 cut(s)	14, 36, 131, 213, 604
BssT1I	CCWWGG	3 cut(s)	84, 159, 519
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	11, 210, 437, 536
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 51
BstKTI	GATC	5 cut(s)	17, 39, 134, 216, 607
BstMBI	GATC	5 cut(s)	14, 36, 131, 213, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	271, 363, 396, 409
BstX2I	RGATCY	4 cut(s)	14, 131, 213, 604
BstYI	RGATCY	4 cut(s)	14, 131, 213, 604
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	341, 368
BtsIMutI	CAGTG	1 cut(s)	456
CfoI	GCGC	2 cut(s)	7, 51
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	5 cut(s)	153, 202, 340, 431, 501
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	3 cut(s)	94, 116, 619
CviJI	RGCY	8 cut(s)	44, 89, 284, 341, 368, 376, 524, 556
CviKI_1	RGCY	8 cut(s)	44, 89, 284, 341, 368, 376, 524, 556
DdeI	CTNAG	4 cut(s)	11, 210, 437, 536
DpnI	GATC	5 cut(s)	16, 38, 133, 215, 606
DpnII	GATC	5 cut(s)	14, 36, 131, 213, 604
DriI	GACNNNNNGTC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	366
Eam1105I	GACNNNNNGTC	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	84, 159, 519
Eco47I	GGWCC	4 cut(s)	153, 202, 431, 501
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	3 cut(s)	84, 159, 519
ErhI	CCWWGG	3 cut(s)	84, 159, 519
FaeI	CATG	3 cut(s)	97, 119, 622
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	93, 115, 618
Fnu4HI	GCNGC	5 cut(s)	8, 285, 377, 410, 423
Fsp4HI	GCNGC	5 cut(s)	8, 285, 377, 410, 423
FspBI	CTAG	2 cut(s)	395, 557
GlaI	GCGC	2 cut(s)	6, 50
GluI	GCNGC	5 cut(s)	8, 285, 377, 410, 423
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	341, 368
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	7, 51
Hin1II	CATG	3 cut(s)	97, 119, 622
Hin6I	GCGC	2 cut(s)	5, 49
HinP1I	GCGC	2 cut(s)	5, 49
HinfI	GANTC	3 cut(s)	107, 251, 494
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	259, 503
Hpy166II	GTNNAC	2 cut(s)	148, 156
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	148, 156
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	287, 308, 319, 379, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	4 cut(s)	11, 210, 437, 536
Hsp92II	CATG	3 cut(s)	97, 119, 622
HspAI	GCGC	2 cut(s)	5, 49
KflI	GGGWCCC	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	14, 36, 131, 213, 604
LmnI	GCTCC	2 cut(s)	34, 373
LpnPI	CCDG	8 cut(s)	205, 219, 232, 243, 342, 417, 510, 517
Lsp1109I	GCAGC	4 cut(s)	271, 363, 396, 409
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	2 cut(s)	395, 557
MaeIII	GTNAC	2 cut(s)	491, 584
MalI	GATC	5 cut(s)	16, 38, 133, 215, 606
MboI	GATC	5 cut(s)	14, 36, 131, 213, 604
MboII	GAAGA	2 cut(s)	246, 476
MflI	RGATCY	4 cut(s)	14, 131, 213, 604
MhlI	GDGCHC	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	101, 488
MnlI	CCTC	9 cut(s)	34, 55, 68, 82, 91, 355, 364, 434, 553
MseI	TTAA	3 cut(s)	99, 183, 552
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	5 cut(s)	14, 36, 131, 213, 604
NlaIII	CATG	3 cut(s)	97, 119, 622
NlaIV	GGNNCC	3 cut(s)	154, 203, 204
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	97
PasI	CCCWGGG	1 cut(s)	219
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	9, 286, 378, 411, 424
PleI	GAGTC	2 cut(s)	101, 488
PpsI	GAGTC	2 cut(s)	101, 488
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	154, 203, 204
PspPI	GGNCC	5 cut(s)	153, 202, 340, 431, 501
PspPPI	RGGWCCY	1 cut(s)	202
PsuI	RGATCY	4 cut(s)	14, 131, 213, 604
SaqAI	TTAA	3 cut(s)	99, 183, 552
SatI	GCNGC	5 cut(s)	8, 285, 377, 410, 423
Sau3AI	GATC	5 cut(s)	14, 36, 131, 213, 604
Sau96I	GGNCC	5 cut(s)	153, 202, 340, 431, 501
SchI	GAGTC	2 cut(s)	101, 488
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	8 cut(s)	60, 74, 161, 366, 378, 419, 503, 558
SfaNI	GCATC	1 cut(s)	505
SinI	GGWCC	4 cut(s)	153, 202, 431, 501
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SsiI	CCGC	2 cut(s)	21, 75
SspMI	CTAG	2 cut(s)	395, 557
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	3 cut(s)	84, 159, 519
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	99, 183, 552
Tru9I	TTAA	3 cut(s)	99, 183, 552
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	5 cut(s)	7, 284, 376, 409, 422
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	477, 591
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	4 cut(s)	153, 202, 431, 501
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	2 cut(s)	395, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.