Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Reverse (-)

18465259 .. 18469128

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCGCTGCTCAGATCCACCGCCTCTGCTCCGTTGATCGAAGCCTCGCGCACCGACCTCTCTTTCTCCACCTCCGCTTCCTGCAAGGTCTGTATTCCTCCCACGCTCCCAATACGGCGTCGACAAGTAGCGCCAGGAGTGTGCAGCCCATTAAAGCAACAGCCACCGAACTTCCACCCACGATTCAGAGATCAGGGAGTAGTGGGAAGATCAAAGTTGGAATCAATGGAGGACTTTCTGATGACTTGTTGGGTTTCAGGCTTTGGTCGGATTGGGCGGTTGGTTCTACGGATAGCGATCGCCAGGGATGATATAGAAGTGGTGGCAGTGAATGATCCTTTAGTTGATGCTAAGTACATGGCTTACATGTTTAAGTATGACTCTACACATGGAGTGTTTGATGGATCTATTAGTGTTGTGGATGGGTCCACCTTGGAAATAAATGGGAAGCAGATTAAAGTTGAGAGCAAAAGGGACCCTGCTGAGATCCCCTGGGGAACTTATGGGGTTGAGTATGTAGTTGAATCTTCTGGGATTTTCACCACTCTTGAAAAGGCTGCATTACATAAAAAGGGTGGTGCAAAAAAAGTGGTGATTCATGAGGAATTTGGTATTCTTGAAGGTTTGATGACGACTGTGCATGCAACTACAGCAACACAAAAAACAGTTGATGGCCCATCAAGGAAGGACTGGAGAGGTGGCCGAGGAGCTGCACAGAATATCATTCCTAGTTCAACCGGTGCTGCAAAGGCTGTTGGTAAAGTTCTACCTGAACTCAATGGAAAGCTTACTGGAATGGCCTTCCGTGTCCCAACTCCTAATGTATCTGTTGTGGACTTAACTTGTCGACTTGAGAAGAGTTCTTCTTATGAGGATATCAAAGCTGCCATCAGGTATGCTGCTGATGGACCACTTAGAGGCATTCTTGGATACACCGATGAAGATGTGGTTTCCAATGATTTTGTTGGTGACTCAAGGTCCAGTATCTTTGATGCCAAGGCTGGATTAGCACTTAGTTCCTCCTTTGTTAAGCTTGTTTCGTGGTATGACAATGAATGGGGTTACAGCAACCGAGTTTTGGATCTCATAGAGCACATGGCATTGGTGGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

371

Amino Acids

40.26

Weight (kDa)

8.17

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	85 - 182	1e-34	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	198 - 349	7.6e-66	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	121, 847
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	21, 75, 277
AclWI	GGATC	5 cut(s)	9, 329, 412, 481, 1089
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	917, 1078
AflIII	ACRYGT	1 cut(s)	366
AgeI	ACCGGT	1 cut(s)	737
AgsI	TTSAA	4 cut(s)	524, 551, 620, 735
AhdI	GACNNNNNGTC	1 cut(s)	976
AjnI	CCWGG	3 cut(s)	133, 302, 491
AluBI	AGCT	4 cut(s)	710, 787, 884, 1033
AluI	AGCT	4 cut(s)	710, 787, 884, 1033
Alw21I	GWGCWC	1 cut(s)	1095
AlwI	GGATC	5 cut(s)	9, 329, 412, 481, 1089
AoxI	GGCC	3 cut(s)	673, 700, 798
ApeKI	GCWGC	7 cut(s)	7, 144, 557, 710, 743, 884, 899
ApoI	RAATTY	1 cut(s)	605
AsiGI	ACCGGT	1 cut(s)	737
AsiSI	GCGATCGC	1 cut(s)	300
AspLEI	GCGC	3 cut(s)	7, 51, 133
AspS9I	GGNCC	5 cut(s)	426, 475, 674, 908, 978
AsuHPI	GGTGA	3 cut(s)	532, 604, 980
AvaII	GGWCC	4 cut(s)	426, 475, 908, 978
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	6 cut(s)	156, 544, 697, 730, 871, 886
BccI	CCATC	6 cut(s)	395, 416, 665, 685, 896, 899
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	3 cut(s)	135, 304, 493
BciVI	GTATCC	1 cut(s)	923
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	648
BfoI	RGCGCY	2 cut(s)	8, 134
BfuI	GTATCC	1 cut(s)	923
BisI	GCNGC	7 cut(s)	8, 145, 558, 711, 744, 885, 900
BlsI	GCNGC	7 cut(s)	9, 146, 559, 712, 745, 886, 901
Bme1390I	CCNGG	3 cut(s)	135, 304, 493
Bme18I	GGWCC	4 cut(s)	426, 475, 908, 978
BmeRI	GACNNNNNGTC	1 cut(s)	976
BmgT120I	GGNCC	5 cut(s)	426, 475, 674, 908, 978
BmiI	GGNNCC	3 cut(s)	427, 476, 477
BmrFI	CCNGG	3 cut(s)	135, 304, 493
BmsI	GCATC	2 cut(s)	337, 982
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	2 cut(s)	872, 958
BsaBI	GATNNNNATC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	6 cut(s)	303, 432, 491, 492, 703, 996
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	2 cut(s)	917, 1078
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	3 cut(s)	695, 796, 981
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	3 cut(s)	135, 304, 493
BseDI	CCNNGG	6 cut(s)	303, 432, 491, 492, 703, 996
BseGI	GGATG	2 cut(s)	313, 427
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	2 cut(s)	917, 1078
BseMII	CTCAG	2 cut(s)	25, 474
BseNI	ACTGG	3 cut(s)	695, 796, 981
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	6 cut(s)	156, 544, 697, 730, 871, 886
BsgI	GTGCAG	2 cut(s)	163, 696
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	675, 702, 800
BshTI	ACCGGT	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiSI	CCGG	1 cut(s)	738
BslFI	GGGAC	2 cut(s)	488, 794
BslI	CCNNNNNNNGG	2 cut(s)	917, 1078
BsmFI	GGGAC	2 cut(s)	488, 794
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	3 cut(s)	675, 702, 800
Bsp1286I	GDGCHC	1 cut(s)	1095
Bsp143I	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
BspACI	CCGC	3 cut(s)	21, 75, 277
BspANI	GGCC	3 cut(s)	675, 702, 800
BspCNI	CTCAG	2 cut(s)	24, 475
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	427, 476, 477
BspPI	GGATC	5 cut(s)	9, 329, 412, 481, 1089
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	3 cut(s)	695, 796, 981
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	6 cut(s)	303, 432, 491, 492, 703, 996
BssMI	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	432, 996
Bst2UI	CCWGG	3 cut(s)	135, 304, 493
Bst4CI	ACNGT	2 cut(s)	637, 667
Bst6I	CTCTTC	1 cut(s)	851
BstACI	GRCGYC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	5 cut(s)	11, 351, 483, 914, 1013
BstF5I	GGATG	2 cut(s)	313, 427
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	2 cut(s)	8, 134
BstHHI	GCGC	3 cut(s)	7, 51, 133
BstKTI	GATC	9 cut(s)	17, 39, 193, 212, 300, 337, 407, 489, 1084
BstMBI	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	650, 749, 1007
BstNI	CCWGG	3 cut(s)	135, 304, 493
BstNSI	RCATGY	2 cut(s)	370, 644
BstSCI	CCNGG	3 cut(s)	133, 302, 491
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	6 cut(s)	156, 544, 697, 730, 871, 886
BstX2I	RGATCY	4 cut(s)	14, 404, 486, 1081
BstYI	RGATCY	4 cut(s)	14, 404, 486, 1081
BsuI	GTATCC	1 cut(s)	923
BsuRI	GGCC	3 cut(s)	675, 702, 800
BtsCI	GGATG	2 cut(s)	313, 427
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	642
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	3 cut(s)	7, 51, 133
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	5 cut(s)	426, 475, 674, 908, 978
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	737
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	6 cut(s)	358, 367, 389, 599, 641, 1096
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	11, 351, 483, 914, 1013
DpnI	GATC	9 cut(s)	16, 38, 192, 211, 299, 336, 406, 488, 1083
DpnII	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
DriI	GACNNNNNGTC	1 cut(s)	976
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	851
Eam1105I	GACNNNNNGTC	1 cut(s)	976
EarI	CTCTTC	1 cut(s)	851
Eco130I	CCWWGG	2 cut(s)	432, 996
Eco32I	GATATC	1 cut(s)	877
Eco47I	GGWCC	4 cut(s)	426, 475, 908, 978
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRII	CCWGG	3 cut(s)	133, 302, 491
EcoRV	GATATC	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	432, 996
ErhI	CCWWGG	2 cut(s)	432, 996
FaeI	CATG	6 cut(s)	361, 370, 392, 602, 644, 1099
FaqI	GGGAC	2 cut(s)	488, 794
FatI	CATG	6 cut(s)	357, 366, 388, 598, 640, 1095
FblI	GTMKAC	2 cut(s)	121, 847
Fnu4HI	GCNGC	7 cut(s)	8, 145, 558, 711, 744, 885, 900
FokI	GGATG	2 cut(s)	320, 434
Fsp4HI	GCNGC	7 cut(s)	8, 145, 558, 711, 744, 885, 900
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	3 cut(s)	6, 50, 132
GluI	GCNGC	7 cut(s)	8, 145, 558, 711, 744, 885, 900
GsuI	CTGGAG	1 cut(s)	712
HaeII	RGCGCY	2 cut(s)	8, 134
HaeIII	GGCC	3 cut(s)	675, 702, 800
HapII	CCGG	1 cut(s)	738
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	3 cut(s)	7, 51, 133
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	6 cut(s)	361, 370, 392, 602, 644, 1099
Hin6I	GCGC	3 cut(s)	5, 49, 131
HinP1I	GCGC	3 cut(s)	5, 49, 131
HincII	GTYRAC	2 cut(s)	122, 848
HindII	GTYRAC	2 cut(s)	122, 848
HindIII	AAGCTT	2 cut(s)	785, 1031
HinfI	GANTC	6 cut(s)	183, 221, 380, 524, 595, 971
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	3 cut(s)	532, 604, 980
Hpy166II	GTNNAC	4 cut(s)	122, 429, 835, 848
Hpy188I	TCNGA	4 cut(s)	14, 188, 240, 270
Hpy188III	TCNNGA	3 cut(s)	548, 599, 617
Hpy8I	GTNNAC	4 cut(s)	122, 429, 835, 848
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	614, 679, 811
HpyCH4III	ACNGT	2 cut(s)	637, 667
HpyCH4V	TGCA	8 cut(s)	84, 144, 560, 581, 640, 644, 713, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	650, 749, 1007
HpyF3I	CTNAG	5 cut(s)	11, 351, 483, 914, 1013
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	6 cut(s)	361, 370, 392, 602, 644, 1099
HspAI	GCGC	3 cut(s)	5, 49, 131
KflI	GGGWCCC	1 cut(s)	475
Kzo9I	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
LmnI	GCTCC	3 cut(s)	34, 111, 707
Lsp1109I	GCAGC	6 cut(s)	156, 544, 697, 730, 871, 886
LweI	GCATC	2 cut(s)	337, 982
MaeI	CTAG	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	968, 1061
MalI	GATC	9 cut(s)	16, 38, 192, 211, 299, 336, 406, 488, 1083
MboI	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
MboII	GAAGA	5 cut(s)	219, 519, 855, 868, 953
MflI	RGATCY	4 cut(s)	14, 404, 486, 1081
MhlI	GDGCHC	1 cut(s)	1095
MluCI	AATT	1 cut(s)	605
MlyI	GAGTC	2 cut(s)	374, 965
MmeI	TCCRAC	2 cut(s)	198, 248
MseI	TTAA	5 cut(s)	152, 372, 456, 839, 1029
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	3 cut(s)	135, 304, 493
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	3 cut(s)	135, 304, 493
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	650, 749, 1007
NdeII	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
NlaIII	CATG	6 cut(s)	361, 370, 392, 602, 644, 1099
NlaIV	GGNNCC	3 cut(s)	427, 476, 477
NmeAIII	GCCGAG	1 cut(s)	728
NmuCI	GTSAC	1 cut(s)	968
NspI	RCATGY	2 cut(s)	370, 644
PaeI	GCATGC	1 cut(s)	644
PagI	TCATGA	1 cut(s)	598
PasI	CCCWGGG	1 cut(s)	492
PciI	ACATGT	1 cut(s)	366
PctI	GAATGC	1 cut(s)	921
PfeI	GAWTC	4 cut(s)	183, 221, 524, 595
PinAI	ACCGGT	1 cut(s)	737
PkrI	GCNGC	7 cut(s)	9, 146, 559, 712, 745, 886, 901
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	2 cut(s)	374, 965
PpsI	GAGTC	2 cut(s)	374, 965
PpuMI	RGGWCCY	1 cut(s)	475
PscI	ACATGT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	3 cut(s)	133, 302, 491
PspGI	CCWGG	3 cut(s)	133, 302, 491
PspN4I	GGNNCC	3 cut(s)	427, 476, 477
PspPI	GGNCC	5 cut(s)	426, 475, 674, 908, 978
PspPPI	RGGWCCY	1 cut(s)	475
PsuI	RGATCY	4 cut(s)	14, 404, 486, 1081
PvuI	CGATCG	1 cut(s)	300
RgaI	GCGATCGC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SalI	GTCGAC	2 cut(s)	120, 846
SaqAI	TTAA	5 cut(s)	152, 372, 456, 839, 1029
SatI	GCNGC	7 cut(s)	8, 145, 558, 711, 744, 885, 900
Sau3AI	GATC	9 cut(s)	14, 36, 190, 209, 297, 334, 404, 486, 1081
Sau96I	GGNCC	5 cut(s)	426, 475, 674, 908, 978
SchI	GAGTC	2 cut(s)	374, 965
ScrFI	CCNGG	3 cut(s)	135, 304, 493
SduI	GDGCHC	1 cut(s)	1095
SfaAI	GCGATCGC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	337, 982
SfcI	CTRYAG	1 cut(s)	648
SgfI	GCGATCGC	1 cut(s)	300
SinI	GGWCC	4 cut(s)	426, 475, 908, 978
SmlI	CTYRAG	2 cut(s)	851, 973
SmoI	CTYRAG	2 cut(s)	851, 973
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	1 cut(s)	605
SsiI	CCGC	3 cut(s)	21, 75, 277
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	3 cut(s)	133, 302, 491
StyI	CCWWGG	2 cut(s)	432, 996
TaaI	ACNGT	2 cut(s)	637, 667
TaqI	TCGA	3 cut(s)	39, 121, 847
TasI	AATT	1 cut(s)	605
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	4 cut(s)	183, 221, 524, 595
Tru1I	TTAA	5 cut(s)	152, 372, 456, 839, 1029
Tru9I	TTAA	5 cut(s)	152, 372, 456, 839, 1029
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	7 cut(s)	7, 144, 557, 710, 743, 884, 899
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	3 cut(s)	587, 954, 1068
TspGWI	ACGGA	3 cut(s)	21, 304, 794
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	4 cut(s)	426, 475, 908, 978
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	2 cut(s)	370, 644
XmiI	GTMKAC	2 cut(s)	121, 847
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.