Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Reverse (-)

18894369 .. 18898213

Gene Structure 3845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032770

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGCTGCTCAGATCCACCGCCTCTGCTCCGTTGATCGAAGCCTCGCGCACCGACCTCTCTTTCTCCACCTCCGCTTCCTCCAAGGTGTCAAGCGTTGGGTTTGAGCGCAATCTGAACTGTTCAACGGTGCAATCATCTATCTTTGGGGCTTCTATCTCAACCGGCTCGTCTTCTTTACAGACAAGTAGCGCCAGGAGTGTCCAGCCCATTAAAGCAACAGCCACCGAACTTCCACCCACGATTCAGAGATCAGGGAGTAGTGGGAAGATCAAAGTTGGTATCAATGGTTTTGGTCGGATTGGGCGGTTGGTTCTACGGATAGCGACCACCAGGGATGATATAGAAGTGGTGGCAGTGAATGATCCTTTAGTTGATGCTAAGTACATGGCTTACATGTTTAAGTATGACTCTACACATGGAGTGTTTGATGGATCTATTAGTGTTGTGGATGGGTCCACCTTGGAAATAAATGGGAAGCAGATTAAAGTTGAGAGCAAAAGGGACCCTGCTGAGATCCCCTGGGGAAGTTATGGGGTGGAGTATGTAGTTGAATCTTCTGGGATTTTCACCACTCTTGATAAGGCTGCATTACATAAAAAGGGTGGTGCAAAGAAAGTGGTCATATCAGCTCCATCAGTGATTCATGAGGAATTTGGTATTCTTGAAGGTTTGATGACGACTGTGCATGCAACTACAGCAACACAAAAAACAGTTGATGGCCCATCAAGGAAGGACTGGAGAGGTGGCCGAGGAGCTGCACAGAATATCATTCCTAGTTCAACCGGTGCTGCAAAGGCTGTTGGTAAAGTTCTACCTGAACTCAATGGAAAGCTTACTGGAATGGCCTTCCGTGTCCCGACTCCTAATGTATCTGTTGTGGACTTAACTTGTCGACTTGAGAAGAGTTCTTCTTATGAGGATGTCAAAGCTGCCATCAGGTATGCTGCTGATGGACCACTTAGAGGCATTCTTGGATACACCGATGAAGATGTGGTTTCCAATGATTTTGTTGGTGACTCAAGCAACCGAGTTTTGGATCTCATAGAGCACATGGCATTGGTGGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

358

Amino Acids

37.71

Weight (kDa)

8.38

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	91 - 192	3.8e-38	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	213 - 352	3.1e-58	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	21, 75, 307
AclWI	GGATC	5 cut(s)	9, 359, 442, 511, 1047
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	1 cut(s)	653
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	2 cut(s)	965, 1036
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	785
AgsI	TTSAA	4 cut(s)	126, 554, 668, 783
AjnI	CCWGG	3 cut(s)	194, 332, 521
AluBI	AGCT	5 cut(s)	632, 758, 835, 932, 1070
AluI	AGCT	5 cut(s)	632, 758, 835, 932, 1070
Alw21I	GWGCWC	1 cut(s)	1053
AlwI	GGATC	5 cut(s)	9, 359, 442, 511, 1047
AoxI	GGCC	3 cut(s)	721, 748, 846
ApeKI	GCWGC	6 cut(s)	7, 587, 758, 791, 932, 947
ApoI	RAATTY	1 cut(s)	653
AsiGI	ACCGGT	1 cut(s)	785
AspLEI	GCGC	4 cut(s)	7, 51, 111, 194
AspS9I	GGNCC	4 cut(s)	456, 505, 722, 956
AsuHPI	GGTGA	2 cut(s)	562, 1028
AvaII	GGWCC	3 cut(s)	456, 505, 956
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	1053
BbvI	GCAGC	5 cut(s)	574, 745, 778, 919, 934
BccI	CCATC	7 cut(s)	425, 446, 643, 713, 733, 944, 947
BciT130I	CCWGG	3 cut(s)	196, 334, 523
BciVI	GTATCC	1 cut(s)	971
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	2 cut(s)	8, 195
BfuI	GTATCC	1 cut(s)	971
BisI	GCNGC	6 cut(s)	8, 588, 759, 792, 933, 948
BlsI	GCNGC	6 cut(s)	9, 589, 760, 793, 934, 949
Bme1390I	CCNGG	3 cut(s)	196, 334, 523
Bme18I	GGWCC	3 cut(s)	456, 505, 956
BmgT120I	GGNCC	4 cut(s)	456, 505, 722, 956
BmiI	GGNNCC	3 cut(s)	457, 506, 507
BmrFI	CCNGG	3 cut(s)	196, 334, 523
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	760
BpuEI	CTTGAG	2 cut(s)	920, 1006
BsaJI	CCNNGG	6 cut(s)	84, 333, 462, 521, 522, 751
BsaWI	WCCGGW	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	2 cut(s)	965, 1036
Bse118I	RCCGGY	2 cut(s)	164, 785
Bse1I	ACTGG	2 cut(s)	743, 844
BseBI	CCWGG	3 cut(s)	196, 334, 523
BseDI	CCNNGG	6 cut(s)	84, 333, 462, 521, 522, 751
BseGI	GGATG	3 cut(s)	343, 457, 928
BseLI	CCNNNNNNNGG	2 cut(s)	965, 1036
BseMII	CTCAG	2 cut(s)	25, 504
BseNI	ACTGG	2 cut(s)	743, 844
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	5 cut(s)	574, 745, 778, 919, 934
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	723, 750, 848
BshTI	ACCGGT	1 cut(s)	785
BsiHKAI	GWGCWC	1 cut(s)	1053
BsiSI	CCGG	2 cut(s)	165, 786
BslFI	GGGAC	2 cut(s)	518, 842
BslI	CCNNNNNNNGG	2 cut(s)	965, 1036
BsmFI	GGGAC	2 cut(s)	518, 842
BsmI	GAATGC	1 cut(s)	969
BsnI	GGCC	3 cut(s)	723, 750, 848
Bsp1286I	GDGCHC	1 cut(s)	1053
Bsp143I	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
BspACI	CCGC	3 cut(s)	21, 75, 307
BspANI	GGCC	3 cut(s)	723, 750, 848
BspCNI	CTCAG	2 cut(s)	24, 505
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	457, 506, 507
BspPI	GGATC	5 cut(s)	9, 359, 442, 511, 1047
BsrFI	RCCGGY	2 cut(s)	164, 785
BsrI	ACTGG	2 cut(s)	743, 844
BssAI	RCCGGY	2 cut(s)	164, 785
BssECI	CCNNGG	6 cut(s)	84, 333, 462, 521, 522, 751
BssMI	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
BssT1I	CCWWGG	2 cut(s)	84, 462
Bst2UI	CCWGG	3 cut(s)	196, 334, 523
Bst4CI	ACNGT	4 cut(s)	122, 130, 685, 715
Bst6I	CTCTTC	1 cut(s)	899
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	4 cut(s)	11, 381, 513, 962
BstF5I	GGATG	3 cut(s)	343, 457, 928
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	2 cut(s)	8, 195
BstHHI	GCGC	4 cut(s)	7, 51, 111, 194
BstKTI	GATC	8 cut(s)	17, 39, 254, 273, 367, 437, 519, 1042
BstMBI	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 797
BstNI	CCWGG	3 cut(s)	196, 334, 523
BstNSI	RCATGY	2 cut(s)	400, 692
BstSCI	CCNGG	3 cut(s)	194, 332, 521
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	5 cut(s)	574, 745, 778, 919, 934
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	4 cut(s)	14, 434, 516, 1039
BstYI	RGATCY	4 cut(s)	14, 434, 516, 1039
BsuI	GTATCC	1 cut(s)	971
BsuRI	GGCC	3 cut(s)	723, 750, 848
BtsCI	GGATG	3 cut(s)	343, 457, 928
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 645
Cac8I	GCNNGC	1 cut(s)	690
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	4 cut(s)	7, 51, 111, 194
Cfr10I	RCCGGY	2 cut(s)	164, 785
Cfr13I	GGNCC	4 cut(s)	456, 505, 722, 956
Csp6I	GTAC	1 cut(s)	385
CspAI	ACCGGT	1 cut(s)	785
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	6 cut(s)	388, 397, 419, 647, 689, 1054
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	4 cut(s)	11, 381, 513, 962
DpnI	GATC	8 cut(s)	16, 38, 253, 272, 366, 436, 518, 1041
DpnII	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
Eco130I	CCWWGG	2 cut(s)	84, 462
Eco47I	GGWCC	3 cut(s)	456, 505, 956
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRII	CCWGG	3 cut(s)	194, 332, 521
EcoT14I	CCWWGG	2 cut(s)	84, 462
ErhI	CCWWGG	2 cut(s)	84, 462
FaeI	CATG	6 cut(s)	391, 400, 422, 650, 692, 1057
FaqI	GGGAC	2 cut(s)	518, 842
FatI	CATG	6 cut(s)	387, 396, 418, 646, 688, 1053
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	6 cut(s)	8, 588, 759, 792, 933, 948
FokI	GGATG	3 cut(s)	350, 464, 935
Fsp4HI	GCNGC	6 cut(s)	8, 588, 759, 792, 933, 948
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	4 cut(s)	6, 50, 110, 193
GluI	GCNGC	6 cut(s)	8, 588, 759, 792, 933, 948
GsuI	CTGGAG	1 cut(s)	760
HaeII	RGCGCY	2 cut(s)	8, 195
HaeIII	GGCC	3 cut(s)	723, 750, 848
HapII	CCGG	2 cut(s)	165, 786
HhaI	GCGC	4 cut(s)	7, 51, 111, 194
Hin1II	CATG	6 cut(s)	391, 400, 422, 650, 692, 1057
Hin6I	GCGC	4 cut(s)	5, 49, 109, 192
HinP1I	GCGC	4 cut(s)	5, 49, 109, 192
HincII	GTYRAC	1 cut(s)	896
HindII	GTYRAC	1 cut(s)	896
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	6 cut(s)	244, 410, 554, 643, 862, 1019
HpaII	CCGG	2 cut(s)	165, 786
HphI	GGTGA	2 cut(s)	562, 1028
Hpy166II	GTNNAC	3 cut(s)	459, 883, 896
Hpy188I	TCNGA	4 cut(s)	14, 117, 249, 300
Hpy188III	TCNNGA	4 cut(s)	578, 647, 665, 859
Hpy8I	GTNNAC	3 cut(s)	459, 883, 896
HpyAV	CCTTC	3 cut(s)	662, 727, 859
HpyCH4III	ACNGT	4 cut(s)	122, 130, 685, 715
HpyCH4V	TGCA	7 cut(s)	133, 590, 611, 688, 692, 761, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 797
HpyF3I	CTNAG	4 cut(s)	11, 381, 513, 962
Hsp92II	CATG	6 cut(s)	391, 400, 422, 650, 692, 1057
HspAI	GCGC	4 cut(s)	5, 49, 109, 192
KflI	GGGWCCC	1 cut(s)	505
Kzo9I	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
LmnI	GCTCC	3 cut(s)	34, 637, 755
Lsp1109I	GCAGC	5 cut(s)	574, 745, 778, 919, 934
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	777
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	8 cut(s)	16, 38, 253, 272, 366, 436, 518, 1041
MboI	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
MboII	GAAGA	6 cut(s)	165, 280, 549, 903, 916, 1001
MflI	RGATCY	4 cut(s)	14, 434, 516, 1039
MhlI	GDGCHC	1 cut(s)	1053
MluCI	AATT	1 cut(s)	653
MlyI	GAGTC	3 cut(s)	404, 856, 1013
MmeI	TCCRAC	1 cut(s)	278
MseI	TTAA	5 cut(s)	213, 402, 486, 887, 1072
MspI	CCGG	2 cut(s)	165, 786
MspR9I	CCNGG	3 cut(s)	196, 334, 523
Mva1269I	GAATGC	1 cut(s)	969
MvaI	CCWGG	3 cut(s)	196, 334, 523
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	698, 797
NdeII	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
NlaIII	CATG	6 cut(s)	391, 400, 422, 650, 692, 1057
NlaIV	GGNNCC	3 cut(s)	457, 506, 507
NmeAIII	GCCGAG	1 cut(s)	776
NmuCI	GTSAC	1 cut(s)	1016
NspI	RCATGY	2 cut(s)	400, 692
PaeI	GCATGC	1 cut(s)	692
PagI	TCATGA	1 cut(s)	646
PasI	CCCWGGG	1 cut(s)	522
PciI	ACATGT	1 cut(s)	396
PctI	GAATGC	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	244, 554, 643
PinAI	ACCGGT	1 cut(s)	785
PkrI	GCNGC	6 cut(s)	9, 589, 760, 793, 934, 949
PleI	GAGTC	3 cut(s)	404, 856, 1013
PpsI	GAGTC	3 cut(s)	404, 856, 1013
PpuMI	RGGWCCY	1 cut(s)	505
PscI	ACATGT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	3 cut(s)	194, 332, 521
PspGI	CCWGG	3 cut(s)	194, 332, 521
PspN4I	GGNNCC	3 cut(s)	457, 506, 507
PspPI	GGNCC	4 cut(s)	456, 505, 722, 956
PspPPI	RGGWCCY	1 cut(s)	505
PsuI	RGATCY	4 cut(s)	14, 434, 516, 1039
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SalI	GTCGAC	1 cut(s)	894
SaqAI	TTAA	5 cut(s)	213, 402, 486, 887, 1072
SatI	GCNGC	6 cut(s)	8, 588, 759, 792, 933, 948
Sau3AI	GATC	8 cut(s)	14, 36, 251, 270, 364, 434, 516, 1039
Sau96I	GGNCC	4 cut(s)	456, 505, 722, 956
SchI	GAGTC	3 cut(s)	404, 856, 1013
ScrFI	CCNGG	3 cut(s)	196, 334, 523
SduI	GDGCHC	1 cut(s)	1053
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	3 cut(s)	456, 505, 956
SmlI	CTYRAG	2 cut(s)	899, 1021
SmoI	CTYRAG	2 cut(s)	899, 1021
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	1 cut(s)	653
SsiI	CCGC	3 cut(s)	21, 75, 307
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	3 cut(s)	194, 332, 521
StyI	CCWWGG	2 cut(s)	84, 462
TaaI	ACNGT	4 cut(s)	122, 130, 685, 715
TaqI	TCGA	2 cut(s)	39, 895
TasI	AATT	1 cut(s)	653
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	3 cut(s)	244, 554, 643
Tru1I	TTAA	5 cut(s)	213, 402, 486, 887, 1072
Tru9I	TTAA	5 cut(s)	213, 402, 486, 887, 1072
TscAI	CASTG	2 cut(s)	363, 645
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	6 cut(s)	7, 587, 758, 791, 932, 947
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	2 cut(s)	635, 1002
TspGWI	ACGGA	3 cut(s)	21, 334, 842
TspRI	CASTG	2 cut(s)	363, 645
VpaK11BI	GGWCC	3 cut(s)	456, 505, 956
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	2 cut(s)	400, 692
XmiI	GTMKAC	1 cut(s)	895
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.