Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Reverse (-)

17730132 .. 17730896

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG168700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCTTCCGTGTCCCGACTCCTAATGTATCTGTTGTGGACTTAACTTGTCGACTTGAGAAGAGTTCTTCTTATGAGGATATCAAAGCTGCCATCAGGTATGCTGCTGATGGACCACTTAGAGGCATTCTTGGATACACCGATGAAGATGTGGTTTCCAATGATTTTGTTGGTGACTCAAGGTCCAGTATCTTTGATGCCAAGGCTGGATTAGCACTTAGTTCCTCCTTTGTTAAGCTTGTTTCGTGGTATGACAATGAATGGGGTTACAGCAACCGAGTTTTGGATCTCATAGAGCACATGGCATTGGTGGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

106

Amino Acids

11.67

Weight (kDa)

4.64

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_C	PF02800	1 - 84	2.6e-28	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	122, 283
AhdI	GACNNNNNGTC	1 cut(s)	181
AluBI	AGCT	2 cut(s)	89, 238
AluI	AGCT	2 cut(s)	89, 238
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	89, 104
AspS9I	GGNCC	2 cut(s)	113, 183
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	113, 183
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	76, 91
BccI	CCATC	2 cut(s)	101, 104
BciVI	GTATCC	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	2 cut(s)	90, 105
BlsI	GCNGC	2 cut(s)	91, 106
Bme18I	GGWCC	2 cut(s)	113, 183
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	113, 183
BmsI	GCATC	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	77, 163
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 283
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	122, 283
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	76, 91
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	122, 283
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	119, 218
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	76, 91
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	113, 183
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	4 cut(s)	5, 89, 206, 238
CviKI_1	RGCY	4 cut(s)	5, 89, 206, 238
DdeI	CTNAG	2 cut(s)	119, 218
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	113, 183
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	304
FaiI	YATR	6 cut(s)	75, 102, 252, 293, 302, 319
FatI	CATG	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	90, 105
Fsp4HI	GCNGC	2 cut(s)	90, 105
GluI	GCNGC	2 cut(s)	90, 105
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	19, 176
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	40, 53
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	2 cut(s)	40, 53
HpyAV	CCTTC	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	119, 218
Hsp92II	CATG	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	3 cut(s)	82, 192, 199
Lsp1109I	GCAGC	2 cut(s)	76, 91
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	173, 266
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	60, 73, 158
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	13, 170
MnlI	CCTC	3 cut(s)	70, 116, 235
MseI	TTAA	2 cut(s)	44, 234
Mva1269I	GAATGC	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	91, 106
PleI	GAGTC	2 cut(s)	13, 170
PpsI	GAGTC	2 cut(s)	13, 170
PspPI	GGNCC	2 cut(s)	113, 183
PsuI	RGATCY	1 cut(s)	286
SalI	GTCGAC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	44, 234
SatI	GCNGC	2 cut(s)	90, 105
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	113, 183
SchI	GAGTC	2 cut(s)	13, 170
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	4 cut(s)	91, 101, 185, 240
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	2 cut(s)	113, 183
SmlI	CTYRAG	2 cut(s)	56, 178
SmoI	CTYRAG	2 cut(s)	56, 178
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	44, 234
Tru9I	TTAA	2 cut(s)	44, 234
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	89, 104
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	159, 273
VpaK11BI	GGWCC	2 cut(s)	113, 183
XmiI	GTMKAC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.