MD10G1210900.v1.1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
31026649 .. 31030685
4037 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1210900.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGGCGGCTTCTTCTCTGCTTAGATCTACAGTCTCAGCTCCGTTGATCGAAGCCTCCCGAGCCGACCTCGCCGCCTCCGCCTCCGCCTCTTTCAAGGTGTCAAGCGTCGGGTTCAGTCGCAATCTGAACTGTCCCAAGGTGCAATCCTCCATATTTGGCACTTCCATCCCAAGCGGGTTATCATCTTTACAGATTTGCAGCGCCAGGAGCGTCCAACCCATCAAGGCCACAGCCACTGAACTGCCACCCACGGTTCAGAAATCAGGGAGTGGTGGGAAGACAAAGATCGGAATCAATGGTTTTGGTAGAATCGGAAGGTTGGTTCTAAGGATTGCAACCACTAGAGATGATATCGAAGTGGTGGCAGTCAATGATCCTTTAGTTGATCCTAAGTACATGGCTTACATGTTTAAGTATGACTCTACACATGGAATATTCGATGGATCAATTAGTGTTGTGGATAATTCCACCTTGGAAATAAATGGGAAGGAAATCAAAGTTGTGAGCAAAAGAGATCCTGCTGAGATTCCTTGGGGTGATTATGGGGTTGAGTATGTTGTCGAATCTTCTGGGATTTTTACAACACTTGAGAAGGCGGCATTACATAAAAAGGGTGGTGCAAAGAAAGTGGTAATATCCGCCCCATCAGCTGATGCACCCATGTTTGTGGTAGGAGTAAATGAGAATACATACAAGCCAAATATGGACATTGTTTCAAATGCAAGCTGTACCACCAACTGCCTTGCTCCTCTTGCCAAGGTGATTCATGAGGAATTTGGTATTCTTGAAGGTTTGATGACCACTGTGCATGCAACTACAGCAACACAGAAGACAGTGGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGAGGAGCTGGACAGAACATCATACCTAGTTCTACCGGTGCTGCAAAGGCAGTTGGAAAAGTTCTACCAGAACTCAATGGAAAGCTCACTGGTATGGCCTTCCGTGTCCCAACTCCTAATGTATCTGTCGTGGACTTAACTTGTCGACTTGAGAAGAGTTCTTCATATGAGGATGTCAAAGCCACGATCAGGTATGCTGCTGATGGGCCACTTAGAGGCATCCTCGGATACACAGAAGAAGATGTCGTCTCCAATGACTTTGTCGGTGACTCAAGGTCTAGTATATTCGATGCCAAGGCTGGATTGGCACTCAGTTCCTCCTTTGTTAAGCTTGTTTCGTGGTACGACAACGAGTGGGGATACAGCAACCGAGTTTTGGACCTCATAGAGCACATGGCGTTAGTGGCAGCATAG

Protein Analysis

428

Amino Acids

45.24

Weight (kDa)

7.6

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 95 - 195 4.8e-39 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 248 - 405 3.3e-68 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1015
AciI CCGC 7 cut(s) 5, 72, 78, 84, 174, 596, 639
AclWI GGATC 4 cut(s) 368, 380, 451, 509
AcsI RAATTY 1 cut(s) 773
AfaI GTAC 3 cut(s) 395, 730, 1214
AfiI CCNNNNNNNGG 3 cut(s) 1059, 1085, 1246
AflIII ACRYGT 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 905
AgsI TTSAA 4 cut(s) 94, 717, 788, 849
AhdI GACNNNNNGTC 1 cut(s) 1144
AjnI CCWGG 1 cut(s) 203
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 6 cut(s) 38, 650, 726, 878, 955, 1201
AluI AGCT 6 cut(s) 38, 650, 726, 878, 955, 1201
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 2 cut(s) 37, 1123
AlwI GGATC 4 cut(s) 368, 380, 451, 509
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 5 cut(s) 225, 841, 868, 966, 1076
ApeKI GCWGC 4 cut(s) 198, 911, 1067, 1277
ApoI RAATTY 1 cut(s) 773
AsiGI ACCGGT 1 cut(s) 905
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 842, 1076, 1249
AsuHPI GGTGA 3 cut(s) 548, 772, 1148
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 1249
BbsI GAAGAC 2 cut(s) 284, 836
Bbv12I GWGCWC 1 cut(s) 1263
BbvI GCAGC 3 cut(s) 210, 898, 1054
BccI CCATC 6 cut(s) 173, 227, 434, 652, 833, 1067
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 2 cut(s) 1091, 1223
BcoDI GTCTC 2 cut(s) 37, 1123
BfaI CTAG 3 cut(s) 342, 897, 1149
BfmI CTRYAG 2 cut(s) 27, 816
BfoI RGCGCY 1 cut(s) 204
BfuI GTATCC 2 cut(s) 1091, 1223
BglII AGATCT 1 cut(s) 23
BisI GCNGC 7 cut(s) 6, 72, 199, 597, 912, 1068, 1278
BlsI GCNGC 7 cut(s) 7, 73, 200, 598, 913, 1069, 1279
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 1249
BmeRI GACNNNNNGTC 1 cut(s) 1144
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 3 cut(s) 842, 1076, 1249
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 643, 1098, 1150
BpiI GAAGAC 2 cut(s) 284, 836
BplI GAGNNNNNCTC 4 cut(s) 51, 83, 1077, 1109
BpuEI CTTGAG 3 cut(s) 608, 1040, 1126
BsaBI GATNNNNATC 1 cut(s) 290
BsaJI CCNNGG 8 cut(s) 135, 249, 471, 530, 756, 871, 1093, 1164
BsaWI WCCGGW 1 cut(s) 905
Bsc4I CCNNNNNNNGG 3 cut(s) 1059, 1085, 1246
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 1 cut(s) 964
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 8 cut(s) 135, 249, 471, 530, 756, 871, 1093, 1164
BseGI GGATG 4 cut(s) 165, 844, 1048, 1089
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 3 cut(s) 1059, 1085, 1246
BseMII CTCAG 3 cut(s) 48, 513, 1195
BseNI ACTGG 1 cut(s) 964
BseRI GAGGAG 3 cut(s) 738, 879, 888
BseXI GCAGC 3 cut(s) 210, 898, 1054
BshFI GGCC 5 cut(s) 227, 843, 870, 968, 1078
BshTI ACCGGT 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 1263
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 906
BslFI GGGAC 2 cut(s) 117, 962
BslI CCNNNNNNNGG 3 cut(s) 1059, 1085, 1246
BsmAI GTCTC 2 cut(s) 37, 1123
BsmBI CGTCTC 1 cut(s) 1123
BsmFI GGGAC 2 cut(s) 117, 962
BsnI GGCC 5 cut(s) 227, 843, 870, 968, 1078
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 1263
Bsp143I GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
BspACI CCGC 7 cut(s) 5, 72, 78, 84, 174, 596, 639
BspANI GGCC 5 cut(s) 227, 843, 870, 968, 1078
BspCNI CTCAG 3 cut(s) 47, 514, 1194
BspHI TCATGA 1 cut(s) 766
BspPI GGATC 4 cut(s) 368, 380, 451, 509
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 1 cut(s) 964
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 8 cut(s) 135, 249, 471, 530, 756, 871, 1093, 1164
BssMI GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
BssT1I CCWWGG 5 cut(s) 135, 471, 530, 756, 1164
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 5 cut(s) 31, 131, 253, 805, 835
Bst6I CTCTTC 1 cut(s) 1019
BstC8I GCNNGC 2 cut(s) 724, 810
BstDEI CTNAG 7 cut(s) 20, 34, 326, 390, 522, 1082, 1181
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 4 cut(s) 165, 844, 1048, 1089
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 8 cut(s) 26, 48, 288, 376, 388, 446, 517, 1059
BstMAI GTCTC 2 cut(s) 37, 1123
BstMBI GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 2 cut(s) 409, 812
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 2 cut(s) 27, 816
BstV1I GCAGC 3 cut(s) 210, 898, 1054
BstV2I GAAGAC 2 cut(s) 284, 836
BstX2I RGATCY 2 cut(s) 23, 514
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 2 cut(s) 23, 514
BsuI GTATCC 2 cut(s) 1091, 1223
BsuRI GGCC 5 cut(s) 227, 843, 870, 968, 1078
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 4 cut(s) 165, 844, 1048, 1089
BtsIMutI CAGTG 4 cut(s) 234, 801, 840, 957
Cac8I GCNNGC 2 cut(s) 724, 810
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 3 cut(s) 842, 1076, 1249
CseI GACGC 2 cut(s) 94, 199
Csp6I GTAC 3 cut(s) 394, 729, 1213
CspAI ACCGGT 1 cut(s) 905
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 7 cut(s) 397, 406, 428, 661, 767, 809, 1264
CviQI GTAC 3 cut(s) 394, 729, 1213
DdeI CTNAG 7 cut(s) 20, 34, 326, 390, 522, 1082, 1181
DpnI GATC 8 cut(s) 25, 47, 287, 375, 387, 445, 516, 1058
DpnII GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
DriI GACNNNNNGTC 1 cut(s) 1144
Eam1104I CTCTTC 1 cut(s) 1019
Eam1105I GACNNNNNGTC 1 cut(s) 1144
EarI CTCTTC 1 cut(s) 1019
EciI GGCGGA 3 cut(s) 67, 73, 628
Eco130I CCWWGG 5 cut(s) 135, 471, 530, 756, 1164
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 1249
Eco88I CYCGRG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 203
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 5 cut(s) 135, 471, 530, 756, 1164
ErhI CCWWGG 5 cut(s) 135, 471, 530, 756, 1164
Esp3I CGTCTC 1 cut(s) 1123
FaeI CATG 7 cut(s) 400, 409, 431, 664, 770, 812, 1267
FaqI GGGAC 2 cut(s) 117, 962
FatI CATG 7 cut(s) 396, 405, 427, 660, 766, 808, 1263
FauI CCCGC 1 cut(s) 167
FauNDI CATATG 1 cut(s) 1036
FblI GTMKAC 1 cut(s) 1015
Fnu4HI GCNGC 7 cut(s) 6, 72, 199, 597, 912, 1068, 1278
FokI GGATG 4 cut(s) 152, 851, 1055, 1076
Fsp4HI GCNGC 7 cut(s) 6, 72, 199, 597, 912, 1068, 1278
FspBI CTAG 3 cut(s) 342, 897, 1149
GlaI GCGC 1 cut(s) 202
GluI GCNGC 7 cut(s) 6, 72, 199, 597, 912, 1068, 1278
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 5 cut(s) 227, 843, 870, 968, 1078
HapII CCGG 1 cut(s) 906
HgaI GACGC 2 cut(s) 94, 199
HhaI GCGC 1 cut(s) 203
Hin1II CATG 7 cut(s) 400, 409, 431, 664, 770, 812, 1267
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 1016
HindII GTYRAC 1 cut(s) 1016
HindIII AAGCTT 1 cut(s) 1199
HinfI GANTC 7 cut(s) 291, 309, 419, 526, 563, 763, 1139
HpaII CCGG 1 cut(s) 906
HphI GGTGA 3 cut(s) 548, 772, 1148
Hpy166II GTNNAC 2 cut(s) 1003, 1016
Hpy188I TCNGA 5 cut(s) 126, 258, 290, 314, 1097
Hpy188III TCNNGA 3 cut(s) 57, 767, 785
Hpy8I GTNNAC 2 cut(s) 1003, 1016
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 7 cut(s) 309, 481, 586, 782, 847, 855, 979
HpyCH4III ACNGT 5 cut(s) 31, 131, 253, 805, 835
HpyCH4V TGCA 9 cut(s) 142, 198, 335, 620, 656, 722, 808, 812, 914
HpyF3I CTNAG 7 cut(s) 20, 34, 326, 390, 522, 1082, 1181
Hsp92II CATG 7 cut(s) 400, 409, 431, 664, 770, 812, 1267
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
LmnI GCTCC 4 cut(s) 43, 207, 751, 875
Lsp1109I GCAGC 3 cut(s) 210, 898, 1054
LweI GCATC 3 cut(s) 643, 1098, 1150
MaeI CTAG 3 cut(s) 342, 897, 1149
MaeIII GTNAC 1 cut(s) 1136
MalI GATC 8 cut(s) 25, 47, 287, 375, 387, 445, 516, 1058
MboI GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
MboII GAAGA 8 cut(s) 3, 289, 558, 841, 1023, 1036, 1118, 1121
MflI RGATCY 2 cut(s) 23, 514
MhlI GDGCHC 1 cut(s) 1263
MluCI AATT 3 cut(s) 447, 463, 773
MlyI GAGTC 2 cut(s) 413, 1133
MmeI TCCRAC 2 cut(s) 238, 904
MseI TTAA 3 cut(s) 411, 1007, 1197
MslI CAYNNNNRTG 2 cut(s) 665, 962
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 906
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
NdeI CATATG 1 cut(s) 1036
NdeII GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
NlaIII CATG 7 cut(s) 400, 409, 431, 664, 770, 812, 1267
NmeAIII GCCGAG 1 cut(s) 896
NmuCI GTSAC 1 cut(s) 1136
NspI RCATGY 2 cut(s) 409, 812
PaeI GCATGC 1 cut(s) 812
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 405
PfeI GAWTC 5 cut(s) 291, 309, 526, 563, 763
PflFI GACNNNGTC 1 cut(s) 1130
PinAI ACCGGT 1 cut(s) 905
PkrI GCNGC 7 cut(s) 7, 73, 200, 598, 913, 1069, 1279
PleI GAGTC 2 cut(s) 413, 1133
PpsI GAGTC 2 cut(s) 413, 1133
PscI ACATGT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 3 cut(s) 842, 1076, 1249
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 2 cut(s) 23, 514
PsyI GACNNNGTC 1 cut(s) 1130
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 3 cut(s) 395, 730, 1214
RsaNI GTAC 3 cut(s) 394, 729, 1213
RseI CAYNNNNRTG 2 cut(s) 665, 962
SalI GTCGAC 1 cut(s) 1014
SaqAI TTAA 3 cut(s) 411, 1007, 1197
SatI GCNGC 7 cut(s) 6, 72, 199, 597, 912, 1068, 1278
Sau3AI GATC 8 cut(s) 23, 45, 285, 373, 385, 443, 514, 1056
Sau96I GGNCC 3 cut(s) 842, 1076, 1249
SchI GAGTC 2 cut(s) 413, 1133
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 1263
SfaNI GCATC 3 cut(s) 643, 1098, 1150
SfcI CTRYAG 2 cut(s) 27, 816
SinI GGWCC 1 cut(s) 1249
SmiMI CAYNNNNRTG 2 cut(s) 665, 962
SmlI CTYRAG 3 cut(s) 587, 1019, 1141
SmoI CTYRAG 3 cut(s) 587, 1019, 1141
SphI GCATGC 1 cut(s) 812
Sse9I AATT 3 cut(s) 447, 463, 773
SsiI CCGC 7 cut(s) 5, 72, 78, 84, 174, 596, 639
SspI AATATT 1 cut(s) 435
SspMI CTAG 3 cut(s) 342, 897, 1149
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 5 cut(s) 135, 471, 530, 756, 1164
TaaI ACNGT 5 cut(s) 31, 131, 253, 805, 835
TaqI TCGA 6 cut(s) 48, 354, 438, 561, 1015, 1158
TasI AATT 3 cut(s) 447, 463, 773
TatI WGTACW 1 cut(s) 393
TauI GCSGC 3 cut(s) 8, 74, 599
TfiI GAWTC 5 cut(s) 291, 309, 526, 563, 763
Tru1I TTAA 3 cut(s) 411, 1007, 1197
Tru9I TTAA 3 cut(s) 411, 1007, 1197
TscAI CASTG 4 cut(s) 241, 808, 840, 964
TseFI GTSAC 1 cut(s) 1136
TseI GCWGC 4 cut(s) 198, 911, 1067, 1277
Tsp45I GTSAC 1 cut(s) 1136
TspDTI ATGAA 3 cut(s) 755, 866, 1023
TspGWI ACGGA 2 cut(s) 30, 962
TspRI CASTG 4 cut(s) 241, 808, 840, 964
Tth111I GACNNNGTC 1 cut(s) 1130
VpaK11BI GGWCC 1 cut(s) 1249
XapI RAATTY 1 cut(s) 773
XceI RCATGY 2 cut(s) 409, 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 1171
XmiI GTMKAC 1 cut(s) 1015
XspI CTAG 3 cut(s) 342, 897, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.