Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020340.1

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Reverse (-)

14767 .. 15899

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020340.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgacgactgtgcatgcaactacagcaacacaaaaaacagttgatggcccatcaaggaaggactggagaggtggccgaggagctgcacagaatatcattcctagttcaaccggtgctgcaaaggctgttggtaaagttctacctgaactcaatggaaagcttaccggaatggccttccgtgtcccgactcctaatgtatctgttgtggacttaacttgtcgacttgagaagagttcttcttatgaggatatcaaagctgccatcaggtatgctgctgatggaccacttagaggcattcttggatacaccgatgaagatgtggtttccaatgattttgttggtgactcaaggtccagtatctttgatgccaaggctggattagcacttagttcctcctttgttaagcttgttacgtggtatgacaatgaatggggttacaccaaccgagttttggatctcatagagcacatggcattggtggtagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

162

Amino Acids

17.38

Weight (kDa)

6.73

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	290, 451
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	108
AhdI	GACNNNNNGTC	1 cut(s)	349
AluBI	AGCT	5 cut(s)	83, 160, 257, 406, 485
AluI	AGCT	5 cut(s)	83, 160, 257, 406, 485
Alw21I	GWGCWC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	3 cut(s)	46, 73, 171
ApeKI	GCWGC	4 cut(s)	83, 116, 257, 272
AsiGI	ACCGGT	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	47, 281, 351
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	281, 351
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	70, 103, 244, 259
BccI	CCATC	4 cut(s)	38, 58, 269, 272
BciVI	GTATCC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	4 cut(s)	84, 117, 258, 273
BlsI	GCNGC	4 cut(s)	85, 118, 259, 274
Bme18I	GGWCC	2 cut(s)	281, 351
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	47, 281, 351
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	2 cut(s)	245, 331
BsaAI	YACGTR	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	76, 369
BsaWI	WCCGGW	2 cut(s)	110, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 451
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	68, 354
BseDI	CCNNGG	2 cut(s)	76, 369
BseLI	CCNNNNNNNGG	2 cut(s)	290, 451
BseNI	ACTGG	2 cut(s)	68, 354
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	4 cut(s)	70, 103, 244, 259
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	48, 75, 173
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	111, 165
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	290, 451
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	48, 75, 173
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	454
BspANI	GGCC	3 cut(s)	48, 75, 173
BspPI	GGATC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	68, 354
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	76, 369
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	10, 40
Bst6I	CTCTTC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	287, 386
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 122, 380
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	4 cut(s)	70, 103, 244, 259
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	3 cut(s)	48, 75, 173
Cac8I	GCNNGC	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	47, 281, 351
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	2 cut(s)	14, 469
DdeI	CTNAG	2 cut(s)	287, 386
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	224
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	281, 351
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	17, 472
FaiI	YATR	6 cut(s)	15, 243, 270, 420, 461, 470
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	13, 468
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	84, 117, 258, 273
Fsp4HI	GCNGC	4 cut(s)	84, 117, 258, 273
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	84, 117, 258, 273
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	48, 75, 173
HapII	CCGG	2 cut(s)	111, 165
Hin1II	CATG	2 cut(s)	17, 472
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HindIII	AAGCTT	2 cut(s)	158, 404
HinfI	GANTC	2 cut(s)	187, 344
HpaII	CCGG	2 cut(s)	111, 165
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	208, 221
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	208, 221
HpyAV	CCTTC	2 cut(s)	52, 184
HpyCH4III	ACNGT	2 cut(s)	10, 40
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	13, 17, 86, 119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 122, 380
HpyF3I	CTNAG	2 cut(s)	287, 386
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	17, 472
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	49, 124, 156, 178, 250, 360, 367
Lsp1109I	GCAGC	4 cut(s)	70, 103, 244, 259
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	3 cut(s)	341, 409, 434
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	3 cut(s)	228, 241, 326
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	468
MlyI	GAGTC	2 cut(s)	181, 338
MnlI	CCTC	5 cut(s)	62, 71, 238, 284, 403
MseI	TTAA	3 cut(s)	212, 402, 487
MspI	CCGG	2 cut(s)	111, 165
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	23, 122, 380
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	2 cut(s)	17, 472
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	17
PctI	GAATGC	1 cut(s)	294
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	85, 118, 259, 274
PleI	GAGTC	2 cut(s)	181, 338
PpsI	GAGTC	2 cut(s)	181, 338
Ppu21I	YACGTR	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	47, 281, 351
PsuI	RGATCY	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	212, 402, 487
SatI	GCNGC	4 cut(s)	84, 117, 258, 273
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	3 cut(s)	47, 281, 351
SchI	GAGTC	2 cut(s)	181, 338
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	281, 351
SmlI	CTYRAG	2 cut(s)	224, 346
SmoI	CTYRAG	2 cut(s)	224, 346
SphI	GCATGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	10, 40
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	1 cut(s)	220
Tru1I	TTAA	3 cut(s)	212, 402, 487
Tru9I	TTAA	3 cut(s)	212, 402, 487
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	4 cut(s)	83, 116, 257, 272
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	327, 441
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	281, 351
XceI	RCATGY	1 cut(s)	17
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.