AT1G16480

Pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013464
Physical Location & Seq
Reverse (-)
5625699 .. 5629013
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16480.1

Sequence Viewer

Length: 2814 bp
ATGTACACCAAGTTTGGCCGAGTCAAACCTGCGCGCCACCTGTTCGATATAATGCCTGTGAGAAACGAAGTCTCTTGGAATACCATGATGTCGGGGATAGTCCGTGTTGGATTGTATTTGGAAGGAATGGAATTTTTTCGGAAGATGTGTGATCTTGGTATTAAGCCAAGTAGCTTTGTGATTGCTAGTTTAGTAACAGCTTGTGGTCGGTCTGGTTCTATGTTCAGAGAAGGGGTTCAAGTTCACGGCTTTGTGGCTAAGTCTGGTTTGTTGTCTGATGTTTACGTTAGTACTGCTATCTTGCATCTCTATGGGGTTTATGGATTGGTTTCGTGTTCAAGGAAGGTTTTTGAGGAGATGCCTGACCGAAACGTGGTGTCTTGGACTTCACTGATGGTTGGTTACTCGGATAAGGGTGAGCCAGAGGAAGTAATTGATATCTATAAAGGTATGAGAGGAGAAGGAGTTGGGTGTAACGAAAATTCCATGTCTTTGGTAATCAGTTCCTGCGGATTGCTTAAAGATGAATCTTTGGGTCGTCAAATTATCGGACAGGTTGTCAAATCGGGACTGGAGAGTAAGCTGGCAGTGGAGAATTCGCTCATATCCATGTTAGGTAGTATGGGAAATGTAGACTATGCAAATTATATTTTTGATCAAATGTCTGAACGTGACACAATTTCATGGAATTCGATTGCTGCGGCATATGCACAAAATGGTCATATCGAGGAATCATTTAGGATTTTCAGTTTGATGCGTCGTTTTCATGATGAAGTGAACTCCACCACTGTGTCTACTCTGTTATCAGTTTTGGGTCATGTAGATCACCAAAAATGGGGTAGAGGAATTCATGGTTTAGTGGTTAAAATGGGGTTTGATTCGGTTGTTTGTGTGTGCAATACTCTTTTGAGAATGTATGCAGGCGCTGGAAGATCAGTAGAGGCAAATTTAGTGTTCAAACAAATGCCCACTAAAGATTTGATCTCATGGAACTCCTTGATGGCTTCTTTTGTCAACGATGGGAGGAGCTTAGATGCGTTAGGACTTCTTTGTTCAATGATAAGTTCCGGAAAATCAGTGAACTATGTGACTTTTACAAGCGCATTGGCTGCCTGCTTTACTCCTGATTTTTTTGAGAAGGGTAGGATCCTTCATGGACTTGTAGTGGTCAGCGGTTTATTTTACAATCAGATTATTGGTAATGCATTGGTTTCCATGTACGGAAAGATAGGTGAGATGAGCGAATCGAGACGGGTACTATTACAGATGCCTAGACGAGATGTAGTAGCTTGGAATGCTCTTATTGGTGGCTATGCTGAGGACGAAGATCCCGACAAGGCCCTGGCGGCTTTTCAAACTATGCGAGTGGAAGGTGTTTCTTCAAATTATATCACAGTGGTAAGTGTTCTTAGTGCTTGCTTATTGCCGGGTGATTTACTTGAACGGGGGAAACCATTACACGCCTATATAGTTTCTGCTGGGTTTGAATCAGATGAACACGTGAAAAATTCGCTTATCACTATGTACGCCAAATGTGGTGATTTAAGCTCGAGTCAGGACCTATTTAACGGATTAGATAATAGGAATATCATCACGTGGAATGCTATGCTTGCGGCAAATGCTCACCACGGTCATGGAGAAGAGGTGCTAAAACTTGTATCAAAGATGAGAAGCTTTGGGGTGAGTCTAGACCAGTTTAGTTTCTCTGAGGGACTTTCTGCCGCTGCGAAGCTAGCCGTCCTAGAGGAAGGCCAACAACTTCATGGCTTAGCTGTAAAACTCGGGTTTGAACATGATTCTTTTATCTTTAACGCTGCTGCAGACATGTATAGCAAATGCGGGGAAATAGGTGAAGTGGTGAAAATGCTTCCTCCATCAGTCAATCGATCACTCCCCTCATGGAACATACTAATATCAGCTTTGGGAAGACACGGGTATTTCGAGGAAGTTTGTGCGACTTTCCATGAGATGCTTGAAATGGGAATCAAGCCGGGCCATGTCACATTTGTCTCTCTTCTTACAGCATGCAGCCACGGGGGATTAGTAGACAAAGGCCTTGCGTATTACGACATGATTGCTAGAGATTTTGGATTAGAACCGGCGATTGAACATTGCATCTGTGTAATTGATCTTCTTGGAAGATCAGGGAGGTTAGCTGAAGCTGAAACCTTTATATCTAAGATGCCAATGAAACCAAACGACCTCGTGTGGCGTAGTTTGTTAGCTTCCTGCAAAATCCACGGGAATTTAGACCGCGGAAGAAAAGCAGCGGAAAATCTCTCGAAGCTAGAACCAGAGGATGATTCTGTTTATGTCTTGTCCTCAAATATGTTCGCAACTACAGGTAGATGGGAAGATGTAGAGAATGTGAGAAAGCAAATGGGTTTCAAGAACATCAAGAAGAAACAAGCTTGCAGTTGGGTGAAACTAAAAGACAAAGTGAGTTCGTTTGGTATTGGAGACAGAACTCATCCACAAACAATGGAGATATACGCAAAGCTAGAAGACATCAAGAAGCTGATCAAAGAATCTGGGTATGTCGCAGATACTAGTCAGGCTTTGCAAGACACAGATGAAGAACAAAAAGAGCACAATCTTTGGAACCACAGCGAAAGACTCGCTCTTGCTTATGCACTGATGAGTACTCCTGAAGGTTCTACGGTTAGAATCTTTAAAAACCTTCGCATATGCAGTGATTGTCACTCTGTTTATAAGTTTGTTAGTAGAGTCATCGGACGTAGAATCGTGTTGAGAGATCAGTATCGGTTTCACCATTTTGAGAGAGGTTTGTGTTCTTGTAAGGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

937

Amino Acids

104.03

Weight (kDa)

6.56

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 22 - 68 6.5e-07 PPR repeat family
PPR_2 PF13041 123 - 170 3e-06 PPR repeat family
PPR_2 PF13041 225 - 271 8.4e-06 PPR repeat family
PPR_2 PF13041 426 - 473 6.4e-08 PPR repeat family
PPR_2 PF13041 528 - 569 5.2e-06 PPR repeat family
PPR_2 PF13041 633 - 677 9.7e-10 PPR repeat family
PPR PF01535 633 - 662 5.2e-07 PPR repeat
E_motif PF20431 747 - 808 7.2e-19 E motif
DYW_deaminase PF14432 845 - 937 1e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2712
Acc36I ACCTGC 1 cut(s) 37
AccI GTMKAC 3 cut(s) 633, 794, 2046
AccII CGCG 2 cut(s) 34, 2256
AccIII TCCGGA 1 cut(s) 1067
AclWI GGATC 3 cut(s) 1141, 1154, 1322
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 8 cut(s) 131, 481, 595, 688, 846, 946, 1507, 2245
AcuI CTGAAG 2 cut(s) 2178, 2670
AcvI CACGTG 2 cut(s) 1501, 1596
AfaI GTAC 6 cut(s) 5, 292, 1220, 1257, 1526, 2644
AfiI CCNNNNNNNGG 2 cut(s) 373, 835
AflIII ACRYGT 2 cut(s) 1498, 1824
AhdI GACNNNNNGTC 1 cut(s) 557
AhlI ACTAGT 1 cut(s) 2549
AjnI CCWGG 1 cut(s) 1341
AleI CACNNNNGTG 1 cut(s) 788
Alw21I GWGCWC 1 cut(s) 2592
Alw26I GTCTC 4 cut(s) 76, 1243, 2014, 2454
AlwI GGATC 3 cut(s) 1141, 1154, 1322
AlwNI CAGNNNCTG 2 cut(s) 507, 926
Ama87I CYCGRG 2 cut(s) 1549, 1781
Aor13HI TCCGGA 1 cut(s) 1067
AoxI GGCC 5 cut(s) 16, 1338, 1750, 1993, 2053
ApeKI GCWGC 7 cut(s) 698, 1109, 1724, 1814, 1817, 2028, 2267
ApoI RAATTY 8 cut(s) 131, 481, 595, 688, 846, 946, 1507, 2245
Asp700I GAANNNNTTC 2 cut(s) 135, 234
AspLEI GCGC 4 cut(s) 34, 36, 926, 1103
AspS9I GGNCC 3 cut(s) 1339, 1558, 1993
AsuC2I CCSGG 2 cut(s) 1428, 1992
AsuNHI GCTAGC 1 cut(s) 1732
AvaI CYCGRG 2 cut(s) 1549, 1781
AvaII GGWCC 1 cut(s) 1558
BamHI GGATCC 1 cut(s) 1146
BarI GAAGNNNNNNTAC 2 cut(s) 2115, 2147
BauI CACGAG 1 cut(s) 2204
BbrPI CACGTG 2 cut(s) 1501, 1596
BbsI GAAGAC 2 cut(s) 1933, 2511
Bbv12I GWGCWC 1 cut(s) 2592
BbvCI CCTCAGC 1 cut(s) 1317
BbvI GCAGC 7 cut(s) 685, 1096, 1711, 1801, 1804, 2040, 2279
BccI CCATC 5 cut(s) 388, 994, 1013, 1882, 2343
BceAI ACGGC 2 cut(s) 262, 1721
BcgI CGANNNNNNTGC 2 cut(s) 2057, 2091
BciT130I CCWGG 1 cut(s) 1343
BclI TGATCA 2 cut(s) 655, 2520
BcnI CCSGG 2 cut(s) 1428, 1992
BcoDI GTCTC 4 cut(s) 76, 1243, 2014, 2454
BcuI ACTAGT 1 cut(s) 2549
BfaI CTAG 9 cut(s) 186, 1272, 1688, 1733, 1742, 2079, 2288, 2501, 2550
BfmI CTRYAG 2 cut(s) 1818, 2340
BfoI RGCGCY 1 cut(s) 927
BfuAI ACCTGC 1 cut(s) 37
BglI GCCNNNNNGGC 1 cut(s) 1346
BlpI GCTNAGC 1 cut(s) 1768
BmcAI AGTACT 2 cut(s) 292, 2644
Bme1390I CCNGG 3 cut(s) 1343, 1428, 1992
Bme18I GGWCC 1 cut(s) 1558
BmeRI GACNNNNNGTC 1 cut(s) 557
BmeT110I CYCGRG 2 cut(s) 1549, 1781
BmgT120I GGNCC 3 cut(s) 1339, 1558, 1993
BmiI GGNNCC 2 cut(s) 1148, 2603
BmrFI CCNGG 3 cut(s) 1343, 1428, 1992
BmsI GCATC 8 cut(s) 313, 348, 744, 1024, 1257, 1959, 2124, 2172
BmtI GCTAGC 1 cut(s) 1736
BpiI GAAGAC 2 cut(s) 1933, 2511
BpmI CTGGAG 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 1317
Bpu1102I GCTNAGC 1 cut(s) 1768
BpuMI CCSGG 2 cut(s) 1428, 1992
Bsa29I ATCGAT 1 cut(s) 1885
BsaAI YACGTR 2 cut(s) 1501, 1596
BsaBI GATNNNNATC 1 cut(s) 2760
BsaJI CCNNGG 5 cut(s) 1341, 1627, 2032, 2239, 2254
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 1629, 1659
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 835
Bse118I RCCGGY 1 cut(s) 2098
Bse1I ACTGG 3 cut(s) 576, 1693, 2813
Bse3DI GCAATG 1 cut(s) 2110
Bse8I GATNNNNATC 1 cut(s) 2760
BseAI TCCGGA 1 cut(s) 1067
BseBI CCWGG 1 cut(s) 1343
BseCI ATCGAT 1 cut(s) 1885
BseDI CCNNGG 5 cut(s) 1341, 1627, 2032, 2239, 2254
BseGI GGATG 2 cut(s) 2305, 2470
BseJI GATNNNNATC 1 cut(s) 2760
BseLI CCNNNNNNNGG 2 cut(s) 373, 835
BseMI GCAATG 1 cut(s) 2110
BseMII CTCAG 2 cut(s) 1308, 1698
BseNI ACTGG 3 cut(s) 576, 1693, 2813
BsePI GCGCGC 1 cut(s) 32
BseRI GAGGAG 3 cut(s) 368, 471, 1039
BseXI GCAGC 7 cut(s) 685, 1096, 1711, 1801, 1804, 2040, 2279
BseYI CCCAGC 1 cut(s) 1478
Bsh1236I CGCG 2 cut(s) 34, 2256
BshFI GGCC 5 cut(s) 18, 1340, 1752, 1995, 2055
BshVI ATCGAT 1 cut(s) 1885
BsiHKAI GWGCWC 1 cut(s) 2592
BsiHKCI CYCGRG 2 cut(s) 1549, 1781
BsiSI CCGG 4 cut(s) 1068, 1427, 1991, 2099
BslFI GGGAC 2 cut(s) 582, 1725
BslI CCNNNNNNNGG 2 cut(s) 373, 835
BsmAI GTCTC 4 cut(s) 76, 1243, 2014, 2454
BsmBI CGTCTC 1 cut(s) 1243
BsmFI GGGAC 2 cut(s) 582, 1725
BsmI GAATGC 2 cut(s) 1300, 1606
BsnI GGCC 5 cut(s) 18, 1340, 1752, 1995, 2055
BsoBI CYCGRG 2 cut(s) 1549, 1781
Bsp1286I GDGCHC 1 cut(s) 2592
Bsp13I TCCGGA 1 cut(s) 1067
Bsp1407I TGTACA 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 1768
BspANI GGCC 5 cut(s) 18, 1340, 1752, 1995, 2055
BspCNI CTCAG 2 cut(s) 1309, 1699
BspDI ATCGAT 1 cut(s) 1885
BspEI TCCGGA 1 cut(s) 1067
BspFNI CGCG 2 cut(s) 34, 2256
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 1148, 2603
BspMAI CTGCAG 1 cut(s) 1822
BspMI ACCTGC 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 1736
BspPI GGATC 3 cut(s) 1141, 1154, 1322
BsrDI GCAATG 1 cut(s) 2110
BsrFI RCCGGY 1 cut(s) 2098
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 576, 1693, 2813
BssAI RCCGGY 1 cut(s) 2098
BssECI CCNNGG 5 cut(s) 1341, 1627, 2032, 2239, 2254
BssHII GCGCGC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 2204
Bst2BI CACGAG 1 cut(s) 2204
Bst2UI CCWGG 1 cut(s) 1343
Bst4CI ACNGT 4 cut(s) 790, 1396, 1631, 2662
Bst6I CTCTTC 2 cut(s) 1635, 2019
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 1501, 1596
BstC8I GCNNGC 9 cut(s) 34, 585, 922, 1114, 1417, 1611, 1734, 2026, 2413
BstDEI CTNAG 7 cut(s) 258, 1030, 1317, 1409, 1707, 1768, 2178
BstDSI CCRYGG 4 cut(s) 1627, 2032, 2239, 2254
BstF5I GGATG 2 cut(s) 2305, 2470
BstFNI CGCG 2 cut(s) 34, 2256
BstH2I RGCGCY 1 cut(s) 927
BstHHI GCGC 4 cut(s) 34, 36, 926, 1103
BstMAI GTCTC 4 cut(s) 76, 1243, 2014, 2454
BstMWI GCNNNNNNNGC 7 cut(s) 707, 1109, 1295, 1346, 1610, 1619, 1733
BstNI CCWGG 1 cut(s) 1343
BstNSI RCATGY 2 cut(s) 1828, 2028
BstSCI CCNGG 3 cut(s) 1341, 1426, 1990
BstSFI CTRYAG 2 cut(s) 1818, 2340
BstUI CGCG 2 cut(s) 34, 2256
BstV1I GCAGC 7 cut(s) 685, 1096, 1711, 1801, 1804, 2040, 2279
BstV2I GAAGAC 2 cut(s) 1933, 2511
BstX2I RGATCY 2 cut(s) 1146, 1327
BstXI CCANNNNNNTGG 2 cut(s) 493, 1634
BstYI RGATCY 2 cut(s) 1146, 1327
Bsu15I ATCGAT 1 cut(s) 1885
BsuRI GGCC 5 cut(s) 18, 1340, 1752, 1995, 2055
BsuTUI ATCGAT 1 cut(s) 1885
BtgI CCRYGG 4 cut(s) 1627, 2032, 2239, 2254
BtsCI GGATG 2 cut(s) 2305, 2470
BtsI GCAGTG 2 cut(s) 594, 2698
BtsIMutI CAGTG 7 cut(s) 389, 594, 786, 1083, 1401, 2633, 2698
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 9 cut(s) 34, 585, 922, 1114, 1417, 1611, 1734, 2026, 2413
CaiI CAGNNNCTG 2 cut(s) 507, 926
CciI TCATGA 1 cut(s) 766
CfoI GCGC 4 cut(s) 34, 36, 926, 1103
Cfr10I RCCGGY 1 cut(s) 2098
Cfr13I GGNCC 3 cut(s) 1339, 1558, 1993
Cfr42I CCGCGG 1 cut(s) 2257
ClaI ATCGAT 1 cut(s) 1885
CseI GACGC 1 cut(s) 746
Csp6I GTAC 6 cut(s) 4, 291, 1219, 1256, 1525, 2643
CviQI GTAC 6 cut(s) 4, 291, 1219, 1256, 1525, 2643
DdeI CTNAG 7 cut(s) 258, 1030, 1317, 1409, 1707, 1768, 2178
DraI TTTAAA 1 cut(s) 2674
DriI GACNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 1635, 2019
Eam1105I GACNNNNNGTC 1 cut(s) 557
EarI CTCTTC 2 cut(s) 1635, 2019
Eco147I AGGCCT 1 cut(s) 2055
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 1558
Eco57I CTGAAG 2 cut(s) 2178, 2670
Eco72I CACGTG 2 cut(s) 1501, 1596
Eco88I CYCGRG 2 cut(s) 1549, 1781
EcoO109I RGGNCCY 2 cut(s) 1339, 1558
EcoRI GAATTC 3 cut(s) 595, 688, 846
EcoRII CCWGG 1 cut(s) 1341
EcoRV GATATC 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 1207
Esp3I CGTCTC 1 cut(s) 1243
FaqI GGGAC 2 cut(s) 582, 1725
FauI CCCGC 1 cut(s) 1832
FauNDI CATATG 2 cut(s) 706, 2687
FbaI TGATCA 2 cut(s) 655, 2520
FblI GTMKAC 3 cut(s) 633, 794, 2046
FokI GGATG 2 cut(s) 2312, 2457
FspBI CTAG 9 cut(s) 186, 1272, 1688, 1733, 1742, 2079, 2288, 2501, 2550
GlaI GCGC 4 cut(s) 33, 35, 925, 1102
GsaI CCCAGC 1 cut(s) 1482
GsuI CTGGAG 1 cut(s) 593
HaeII RGCGCY 1 cut(s) 927
HaeIII GGCC 5 cut(s) 18, 1340, 1752, 1995, 2055
HapII CCGG 4 cut(s) 1068, 1427, 1991, 2099
HgaI GACGC 1 cut(s) 746
HhaI GCGC 4 cut(s) 34, 36, 926, 1103
Hin6I GCGC 4 cut(s) 32, 34, 924, 1101
HinP1I GCGC 4 cut(s) 32, 34, 924, 1101
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HindIII AAGCTT 2 cut(s) 1672, 2409
HpaII CCGG 4 cut(s) 1068, 1427, 1991, 2099
Hpy166II GTNNAC 9 cut(s) 6, 244, 283, 634, 778, 795, 1015, 1081, 2047
Hpy8I GTNNAC 9 cut(s) 6, 244, 283, 634, 778, 795, 1015, 1081, 2047
Hpy99I CGWCG 1 cut(s) 762
HpyCH4III ACNGT 4 cut(s) 790, 1396, 1631, 2662
HpyCH4IV ACGT 6 cut(s) 285, 372, 670, 1500, 1595, 2737
HpyF10VI GCNNNNNNNGC 7 cut(s) 707, 1109, 1295, 1346, 1610, 1619, 1733
HpyF3I CTNAG 7 cut(s) 258, 1030, 1317, 1409, 1707, 1768, 2178
HpySE526I ACGT 6 cut(s) 285, 372, 670, 1500, 1595, 2737
HspAI GCGC 4 cut(s) 32, 34, 924, 1101
Kpn2I TCCGGA 1 cut(s) 1067
Ksp22I TGATCA 2 cut(s) 655, 2520
KspI CCGCGG 1 cut(s) 2257
LmnI GCTCC 1 cut(s) 1026
Lsp1109I GCAGC 7 cut(s) 685, 1096, 1711, 1801, 1804, 2040, 2279
LweI GCATC 8 cut(s) 313, 348, 744, 1024, 1257, 1959, 2124, 2172
MaeI CTAG 9 cut(s) 186, 1272, 1688, 1733, 1742, 2079, 2288, 2501, 2550
MaeII ACGT 6 cut(s) 285, 372, 670, 1500, 1595, 2737
MaeIII GTNAC 7 cut(s) 193, 401, 473, 671, 1087, 1999, 2699
MflI RGATCY 2 cut(s) 1146, 1327
MhlI GDGCHC 1 cut(s) 2592
MlyI GAGTC 5 cut(s) 30, 1561, 1693, 2610, 2736
MmeI TCCRAC 1 cut(s) 88
Mph1103I ATGCAT 1 cut(s) 1207
MroI TCCGGA 1 cut(s) 1067
MroXI GAANNNNTTC 2 cut(s) 135, 234
MseI TTAA 7 cut(s) 162, 519, 864, 1544, 1566, 1809, 2673
MslI CAYNNNNRTG 4 cut(s) 309, 608, 788, 1632
MspA1I CMGCKG 4 cut(s) 1173, 1724, 2256, 2270
MspI CCGG 4 cut(s) 1068, 1427, 1991, 2099
MspR9I CCNGG 3 cut(s) 1343, 1428, 1992
Mva1269I GAATGC 2 cut(s) 1300, 1606
MvaI CCWGG 1 cut(s) 1343
MvnI CGCG 2 cut(s) 34, 2256
MwoI GCNNNNNNNGC 7 cut(s) 707, 1109, 1295, 1346, 1610, 1619, 1733
NciI CCSGG 2 cut(s) 1428, 1992
NdeI CATATG 2 cut(s) 706, 2687
NheI GCTAGC 1 cut(s) 1732
NlaIV GGNNCC 2 cut(s) 1148, 2603
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 4 cut(s) 671, 1087, 1999, 2699
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 2 cut(s) 1828, 2028
OliI CACNNNNGTG 1 cut(s) 788
PaeI GCATGC 1 cut(s) 2028
PaeR7I CTCGAG 1 cut(s) 1549
PagI TCATGA 1 cut(s) 766
PauI GCGCGC 1 cut(s) 32
PceI AGGCCT 1 cut(s) 2055
PciI ACATGT 1 cut(s) 1824
PcsI WCGNNNNNNNCGW 2 cut(s) 1329, 1938
PctI GAATGC 2 cut(s) 1300, 1606
PdmI GAANNNNTTC 2 cut(s) 135, 234
PleI GAGTC 5 cut(s) 29, 1560, 1692, 2610, 2735
PmaCI CACGTG 2 cut(s) 1501, 1596
PmlI CACGTG 2 cut(s) 1501, 1596
PpsI GAGTC 5 cut(s) 29, 1560, 1692, 2610, 2735
Ppu21I YACGTR 2 cut(s) 1501, 1596
PpuMI RGGWCCY 1 cut(s) 1558
PscI ACATGT 1 cut(s) 1824
PsiI TTATAA 1 cut(s) 2712
Psp5II RGGWCCY 1 cut(s) 1558
Psp6I CCWGG 1 cut(s) 1341
PspCI CACGTG 2 cut(s) 1501, 1596
PspFI CCCAGC 1 cut(s) 1478
PspGI CCWGG 1 cut(s) 1341
PspN4I GGNNCC 2 cut(s) 1148, 2603
PspPI GGNCC 3 cut(s) 1339, 1558, 1993
PspPPI RGGWCCY 1 cut(s) 1558
PspXI VCTCGAGB 1 cut(s) 1549
PstI CTGCAG 1 cut(s) 1822
PstNI CAGNNNCTG 2 cut(s) 507, 926
PsuI RGATCY 2 cut(s) 1146, 1327
PteI GCGCGC 1 cut(s) 32
RsaI GTAC 6 cut(s) 5, 292, 1220, 1257, 1526, 2644
RsaNI GTAC 6 cut(s) 4, 291, 1219, 1256, 1525, 2643
RseI CAYNNNNRTG 4 cut(s) 309, 608, 788, 1632
SacII CCGCGG 1 cut(s) 2257
SaqAI TTAA 7 cut(s) 162, 519, 864, 1544, 1566, 1809, 2673
Sau96I GGNCC 3 cut(s) 1339, 1558, 1993
ScaI AGTACT 2 cut(s) 292, 2644
SchI GAGTC 5 cut(s) 30, 1561, 1693, 2610, 2736
ScrFI CCNGG 3 cut(s) 1343, 1428, 1992
SduI GDGCHC 1 cut(s) 2592
SfaNI GCATC 8 cut(s) 313, 348, 744, 1024, 1257, 1959, 2124, 2172
SfcI CTRYAG 2 cut(s) 1818, 2340
Sfr274I CTCGAG 1 cut(s) 1549
Sfr303I CCGCGG 1 cut(s) 2257
SgrBI CCGCGG 1 cut(s) 2257
SinI GGWCC 1 cut(s) 1558
SlaI CTCGAG 1 cut(s) 1549
SmiMI CAYNNNNRTG 4 cut(s) 309, 608, 788, 1632
SmlI CTYRAG 1 cut(s) 1549
SmoI CTYRAG 1 cut(s) 1549
SpeI ACTAGT 1 cut(s) 2549
SphI GCATGC 1 cut(s) 2028
SseBI AGGCCT 1 cut(s) 2055
SspMI CTAG 9 cut(s) 186, 1272, 1688, 1733, 1742, 2079, 2288, 2501, 2550
StuI AGGCCT 1 cut(s) 2055
StyD4I CCNGG 3 cut(s) 1341, 1426, 1990
TaaI ACNGT 4 cut(s) 790, 1396, 1631, 2662
TaiI ACGT 6 cut(s) 288, 375, 673, 1503, 1598, 2740
TaqI TCGA 8 cut(s) 45, 692, 726, 1247, 1550, 1885, 1941, 2282
TaqII GACCGA 2 cut(s) 198, 381
TatI WGTACW 3 cut(s) 3, 290, 2642
TauI GCSGC 4 cut(s) 704, 1349, 1616, 1724
Tru1I TTAA 7 cut(s) 162, 519, 864, 1544, 1566, 1809, 2673
Tru9I TTAA 7 cut(s) 162, 519, 864, 1544, 1566, 1809, 2673
TscAI CASTG 7 cut(s) 396, 594, 793, 1083, 1401, 2640, 2698
TseFI GTSAC 4 cut(s) 671, 1087, 1999, 2699
TseI GCWGC 7 cut(s) 698, 1109, 1724, 1814, 1817, 2028, 2267
Tsp45I GTSAC 4 cut(s) 671, 1087, 1999, 2699
TspGWI ACGGA 3 cut(s) 92, 1236, 1584
TspRI CASTG 7 cut(s) 396, 594, 793, 1083, 1401, 2640, 2698
VpaK11BI GGWCC 1 cut(s) 1558
XapI RAATTY 8 cut(s) 131, 481, 595, 688, 846, 946, 1507, 2245
XbaI TCTAGA 1 cut(s) 1687
XceI RCATGY 2 cut(s) 1828, 2028
XcmI CCANNNNNNNNNTGG 1 cut(s) 1760
XhoI CTCGAG 1 cut(s) 1549
XmiI GTMKAC 3 cut(s) 633, 794, 2046
XmnI GAANNNNTTC 2 cut(s) 135, 234
XspI CTAG 9 cut(s) 186, 1272, 1688, 1733, 1742, 2079, 2288, 2501, 2550
ZrmI AGTACT 2 cut(s) 292, 2644
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.