Rh5BG178300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013464
Physical Location & Seq
Forward (+)
19354508 .. 19357403
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG178300.1

Sequence Viewer

Length: 2499 bp
ATGTACTCGAAATTTGGTCGTATCGAATATGCACGTAAGGTGTTTGATGATATTCCTGACAGAAATGAAGCTTCTTGGAACACGATGATGTCGAGCTATGTGAGAGTGGGGTTGTATTCCGACTCGGTTAGGTTCTTTTGTGAGATGGTTGGCTGTGGCGTTAGGCCGAGTGGGTTTGTCATTGCTAGTTTGGTTACTGCGTGTGATAAGTCTGGTTCTATGTTTTGTGAAGGAATGCAAGTTCATGGCTTTGTGGTGAAAATTGGGTTGTTGTGTGATGTGTTTGTGGGTACTTCTGTTTTGCATTTTTATGGGACCTATGGTGTTGTTTCGAATGCTCGAAAGGTGTTTGAGGAGATGCCGGATAAGAATGTGGTTACTTGGACTTCTTTGATTGTTGGGTATTCAAATGATGGAGATTTGGGAGAGGTAGTGAGTATATATAAGCGTATGAGGCGTGAAGGAGTGTGTTGCAATGATAATACTTTGGCTATAGTGTTTAGTACTTGTGGGGCGCTGGGGGATGAGTTATTGGGTCAACAAGTTCTTGGAGATGTTGTGAAACTTGGACTGCAGACTAGTGTTTCTGTGGCAAATTCGCTCATATCCATGTATGGTAGCTTTGGTAATGTGGGCGAGGCGTGCTATGTATTTGATCACATGGATGAAAGGGACACAATCTCATGGAATTCTATTATTTCTGCTAATGTGCAAAATGGGCTTTGTGAAGAATCATTACGGTATTTTCATCGTATGCGGCATGTTAATAAAGAAGTGAATTCTATAACAGTTTCGACGTTGTTGGGAGTCTGCGGTTCCACAGATAAACTGAAGTGGGGCAGGGGAATTCATGGACTAGTGGTGAAACTGGGGATGGAATCAAATGTTTGTGTTGGCAATACTCTTTTAAGTATGTATTCTGAGGCTGGAAAATCTGAAGATGCTGAGTTAGTTTTCAAAAGAATGATAGAGAAGGATATAATCTCATGGAACTCCATGTTAGCATGCTATGTTCAGAATGAGGAGTCCCAAAATGCCCTCAAACATTTTGCTGAAATGCTGCGGACAAGAAAAGCAATAAATTATGTGACTTTAACAAGTGCATTATCTGCCTGTTCAAATCCAGAATTTGTAGTTGAAGGAAAGATTCTTCATGCTCTAGCAGTCATTGCAGGCCTACAAGACAATCTGATAGTCGGAAATGCATTAGTTTCCATGTATGGAAAGCTTAGTAAGACGCTTGAAGCAGCGAAGGTGTTGCAAACAATGCCCAAGCGAGATGAAGTTACTTGGAATTCTCTCATCGGTAGTTATGCTGAAAACAAAGAACCAGATGAGGTAATTACAGCTTTTAAACTCATGAGAAAAGAAGAAACTGCAGCAAACTACATTACAATAATTAATGTTCTTGGTGCTTTCCTGATTCCTAGTGATCTACTAAAACATGGGATGCCCATCCATGCATACATAGTTCTAACAGGATTTGAATCAGAAAAGTATGTGCAGAGTTCCCTTATTACGATGTATGCTAAGTGTGGTGATTTGAACTCAAGTAATTCCATATTTAGTGGACTAACTGTCAAGAACTCCATTGCATGGAATGCAATCATTGCTGCAAATGCTAACCATGGCCTTGAGGAAGCTTTGAAACTTGCTTTGATGATGAGAAGAGCTGGAGTGGACTTTGATCAGTTCAGCTTATCTATCGCACTTTCTGTTAGTGCAGACCTGGCTATGTTGGTAGAAGGTCAGCAGCTTCATGGCCTGGTAGTTAAGCTTGGTTTTGACACAGACCATTATATTACAAATGCTGCGATGGATATGTATGGAAAATGCGGGGAGATGGAAGATGTTCTGAAGATGCTTCCCTCACCAACCATTAGGTCACGATTATCATGGAACATCATGATATCATCGTTTGCCAAACATGGGTGTTTCGAGAAGGCTAGGGAGAGCTTTCATGAAATGGTAAGTCTGGGTGTGAAACCTGACCATGTCACCTTTGTCTCACTTCTCTCTGCGTGCAGTCATGGGGGTCTCGTGGATGATGGTCTTGCATACTATAATGCAATGACTACAGAGTTCGGTGTCCCACCAGCAATAGAACATTGTGTGTGCGTAATTGATCTTCTTGGGCGATCAGGAAGGCTTTCTGAGGCTGAAAACTTTATTAAAGAAATGCCAGTCCCCCCAAATGACCTTGTGTGGCGGAGCTTGTTGGCTGCATGTAAAATTCATCGCAATTTGGAATTAGGGAGGAAAGCAGCAGACCATCTTCTTGAGTTAGATCCATCAGACGATTCAGCTTATGTTCTTTTCTCAAATGTTTGTGCAAGTACTGGAAGATGGGAGGAAGTAGAGAATGTAAGGAGGCAAATGGTGATGGCAAGTGTTCTTGTTCTGACTATTGGTGAGGTCAAGAGGAGCTACCTAAAGATCCTCAAATACACAGTACCAGATAAAGGGATCAAAGCTAATTTGATACTAGGCATAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

832

Amino Acids

91.62

Weight (kDa)

5.85

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 25 - 54 4.3e-06 PPR repeat
PPR_2 PF13041 123 - 170 1.6e-08 PPR repeat family
PPR PF01535 126 - 156 6.7e-07 PPR repeat
PPR_2 PF13041 325 - 373 9.7e-06 PPR repeat family
PPR PF01535 632 - 661 1.2e-07 PPR repeat
PPR_2 PF13041 632 - 676 2.2e-11 PPR repeat family
E_motif PF20431 746 - 793 3.9e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1596
AciI CCGC 5 cut(s) 757, 813, 1063, 1836, 2209
AclWI GGATC 3 cut(s) 2282, 2431, 2474
AcsI RAATTY 8 cut(s) 11, 595, 688, 778, 846, 1127, 1294, 2232
AcuI CTGAAG 3 cut(s) 851, 957, 1877
AfaI GTAC 5 cut(s) 5, 292, 505, 2338, 2454
AfiI CCNNNNNNNGG 3 cut(s) 1596, 1929, 2462
AgsI TTSAA 8 cut(s) 408, 958, 1119, 1139, 1244, 1487, 1546, 1648
AhdI GACNNNNNGTC 1 cut(s) 1577
AhlI ACTAGT 2 cut(s) 578, 856
AjnI CCWGG 2 cut(s) 1728, 1764
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
Alw26I GTCTC 2 cut(s) 2011, 2042
AlwI GGATC 3 cut(s) 2282, 2431, 2474
AoxI GGCC 4 cut(s) 164, 1174, 1630, 1762
ApeKI GCWGC 8 cut(s) 1060, 1247, 1379, 1613, 1753, 1811, 2222, 2264
ApoI RAATTY 8 cut(s) 11, 595, 688, 778, 846, 1127, 1294, 2232
AseI ATTAAT 1 cut(s) 1401
Asp700I GAANNNNTTC 2 cut(s) 1851, 2149
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 7 cut(s) 268, 874, 1550, 1863, 1990, 2392, 2423
AsuII TTCGAA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 315
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BarI GAAGNNNNNNTAC 4 cut(s) 720, 752, 2112, 2144
BauI CACGAG 1 cut(s) 2039
BbvI GCAGC 8 cut(s) 1047, 1259, 1391, 1600, 1765, 1798, 2209, 2276
BcgI CGANNNNNNTGC 2 cut(s) 1240, 1274
BciT130I CCWGG 2 cut(s) 1730, 1766
BclI TGATCA 2 cut(s) 655, 1687
BcoDI GTCTC 2 cut(s) 2011, 2042
BcuI ACTAGT 2 cut(s) 578, 856
BfaI CTAG 7 cut(s) 186, 579, 857, 1160, 1428, 1947, 2486
BfmI CTRYAG 4 cut(s) 492, 572, 1377, 2076
BfoI RGCGCY 1 cut(s) 518
BisI GCNGC 9 cut(s) 758, 1061, 1248, 1380, 1614, 1754, 1812, 2223, 2265
BlsI GCNGC 9 cut(s) 759, 1062, 1249, 1381, 1615, 1755, 1813, 2224, 2266
BmcAI AGTACT 2 cut(s) 505, 2338
Bme1390I CCNGG 2 cut(s) 1730, 1766
Bme18I GGWCC 1 cut(s) 315
BmeRI GACNNNNNGTC 1 cut(s) 1577
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 817
BmrFI CCNGG 2 cut(s) 1730, 1766
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 4 cut(s) 348, 931, 1440, 1851
BmuI ACTGGG 1 cut(s) 878
BpmI CTGGAG 1 cut(s) 1695
Bpu14I TTCGAA 1 cut(s) 332
BpuEI CTTGAG 3 cut(s) 1534, 1655, 2300
BsaAI YACGTR 1 cut(s) 35
BsaBI GATNNNNATC 2 cut(s) 1454, 1486
BsaI GGTCTC 1 cut(s) 2042
BsaJI CCNNGG 1 cut(s) 1627
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 1596, 1929, 2462
Bse1I ACTGG 3 cut(s) 873, 2183, 2344
Bse3DI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
Bse8I GATNNNNATC 2 cut(s) 1454, 1486
BseBI CCWGG 2 cut(s) 1730, 1766
BseDI CCNNGG 1 cut(s) 1627
BseGI GGATG 6 cut(s) 529, 670, 879, 1455, 1455, 2050
BseJI GATNNNNATC 2 cut(s) 1454, 1486
BseLI CCNNNNNNNGG 3 cut(s) 1596, 1929, 2462
BseMI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
BseMII CTCAG 3 cut(s) 912, 936, 2145
BseNI ACTGG 3 cut(s) 873, 2183, 2344
BseRI GAGGAG 3 cut(s) 368, 1037, 2437
BseXI GCAGC 8 cut(s) 1047, 1259, 1391, 1600, 1765, 1798, 2209, 2276
BseYI CCCAGC 1 cut(s) 517
BsgI GTGCAG 3 cut(s) 1523, 1743, 2044
BshFI GGCC 4 cut(s) 166, 1176, 1632, 1764
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 5 cut(s) 328, 686, 1012, 2075, 2171
BslI CCNNNNNNNGG 3 cut(s) 1596, 1929, 2462
BsmAI GTCTC 2 cut(s) 2011, 2042
BsmFI GGGAC 5 cut(s) 328, 686, 1012, 2075, 2171
BsmI GAATGC 3 cut(s) 240, 340, 1606
BsnI GGCC 4 cut(s) 166, 1176, 1632, 1764
Bso31I GGTCTC 1 cut(s) 2042
Bsp119I TTCGAA 1 cut(s) 332
Bsp143I GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
Bsp19I CCATGG 1 cut(s) 1627
BspACI CCGC 5 cut(s) 757, 813, 1063, 1836, 2209
BspANI GGCC 4 cut(s) 166, 1176, 1632, 1764
BspCNI CTCAG 3 cut(s) 913, 937, 2146
BspHI TCATGA 3 cut(s) 1359, 1905, 1960
BspLI GGNNCC 2 cut(s) 316, 817
BspMAI CTGCAG 2 cut(s) 576, 1381
BspPI GGATC 3 cut(s) 2282, 2431, 2474
BspQI GCTCTTC 1 cut(s) 1663
BspT104I TTCGAA 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 2042
BsrDI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
BsrI ACTGG 3 cut(s) 873, 2183, 2344
BssECI CCNNGG 1 cut(s) 1627
BssMI GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
BssSI CACGAG 1 cut(s) 2039
BssT1I CCWWGG 1 cut(s) 1627
Bst2BI CACGAG 1 cut(s) 2039
Bst2UI CCWGG 2 cut(s) 1730, 1766
Bst4CI ACNGT 4 cut(s) 741, 790, 1579, 2452
Bst6I CTCTTC 1 cut(s) 1663
BstAPI GCANNNNNTGC 5 cut(s) 1109, 1169, 1267, 1601, 1610
BstBAI YACGTR 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 4 cut(s) 643, 1006, 1174, 2023
BstDEI CTNAG 5 cut(s) 921, 945, 1229, 1530, 2154
BstDSI CCRYGG 1 cut(s) 1627
BstF5I GGATG 6 cut(s) 529, 670, 879, 1455, 1455, 2050
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 8 cut(s) 658, 1435, 1690, 2128, 2141, 2290, 2439, 2469
BstMAI GTCTC 2 cut(s) 2011, 2042
BstMBI GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
BstNI CCWGG 2 cut(s) 1730, 1766
BstNSI RCATGY 3 cut(s) 764, 1008, 2229
BstSCI CCNGG 2 cut(s) 1728, 1764
BstSFI CTRYAG 4 cut(s) 492, 572, 1377, 2076
BstV1I GCAGC 8 cut(s) 1047, 1259, 1391, 1600, 1765, 1798, 2209, 2276
BstX2I RGATCY 2 cut(s) 2287, 2436
BstYI RGATCY 2 cut(s) 2287, 2436
BsuRI GGCC 4 cut(s) 166, 1176, 1632, 1764
BtgI CCRYGG 1 cut(s) 1627
BtgZI GCGATG 2 cut(s) 1829, 2222
BtsCI GGATG 6 cut(s) 529, 670, 879, 1455, 1455, 2050
Cac8I GCNNGC 4 cut(s) 643, 1006, 1174, 2023
CciI TCATGA 3 cut(s) 1359, 1905, 1960
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 1246
Csp6I GTAC 5 cut(s) 4, 291, 504, 2337, 2453
CviQI GTAC 5 cut(s) 4, 291, 504, 2337, 2453
DdeI CTNAG 5 cut(s) 921, 945, 1229, 1530, 2154
DpnI GATC 8 cut(s) 657, 1434, 1689, 2127, 2140, 2289, 2438, 2468
DpnII GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
DraI TTTAAA 1 cut(s) 1354
DriI GACNNNNNGTC 1 cut(s) 1577
Eam1104I CTCTTC 1 cut(s) 1663
Eam1105I GACNNNNNGTC 1 cut(s) 1577
EarI CTCTTC 1 cut(s) 1663
EciI GGCGGA 1 cut(s) 2224
Eco130I CCWWGG 1 cut(s) 1627
Eco147I AGGCCT 1 cut(s) 1176
Eco31I GGTCTC 1 cut(s) 2042
Eco32I GATATC 1 cut(s) 1911
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 3 cut(s) 851, 957, 1877
EcoO109I RGGNCCY 1 cut(s) 315
EcoRI GAATTC 4 cut(s) 688, 778, 846, 1294
EcoRII CCWGG 2 cut(s) 1728, 1764
EcoRV GATATC 1 cut(s) 1911
EcoT14I CCWWGG 1 cut(s) 1627
EcoT22I ATGCAT 2 cut(s) 1207, 1465
ErhI CCWWGG 1 cut(s) 1627
FaqI GGGAC 5 cut(s) 328, 686, 1012, 2075, 2171
FauI CCCGC 1 cut(s) 1829
FbaI TGATCA 2 cut(s) 655, 1687
Fnu4HI GCNGC 9 cut(s) 758, 1061, 1248, 1380, 1614, 1754, 1812, 2223, 2265
FokI GGATG 6 cut(s) 536, 677, 886, 1442, 1462, 2057
Fsp4HI GCNGC 9 cut(s) 758, 1061, 1248, 1380, 1614, 1754, 1812, 2223, 2265
FspBI CTAG 7 cut(s) 186, 579, 857, 1160, 1428, 1947, 2486
GlaI GCGC 1 cut(s) 516
GluI GCNGC 9 cut(s) 758, 1061, 1248, 1380, 1614, 1754, 1812, 2223, 2265
GsaI CCCAGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 1695
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 4 cut(s) 166, 1176, 1632, 1764
HapII CCGG 1 cut(s) 362
HgaI GACGC 1 cut(s) 1246
HhaI GCGC 1 cut(s) 517
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HindIII AAGCTT 4 cut(s) 69, 1226, 1641, 1775
HinfI GANTC 9 cut(s) 122, 731, 807, 878, 1025, 1147, 1423, 1487, 2300
HpaII CCGG 1 cut(s) 362
HphI GGTGA 7 cut(s) 268, 874, 1550, 1863, 1990, 2392, 2423
Hpy166II GTNNAC 3 cut(s) 539, 1571, 1681
Hpy8I GTNNAC 3 cut(s) 539, 1571, 1681
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 8 cut(s) 224, 455, 967, 1133, 1246, 1739, 1936, 2139
HpyCH4III ACNGT 4 cut(s) 741, 790, 1579, 2452
HpyCH4IV ACGT 2 cut(s) 34, 797
HpyF3I CTNAG 5 cut(s) 921, 945, 1229, 1530, 2154
HpySE526I ACGT 2 cut(s) 34, 797
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 2 cut(s) 655, 1687
Kzo9I GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
LguI GCTCTTC 1 cut(s) 1663
LmnI GCTCC 2 cut(s) 2211, 2424
Lsp1109I GCAGC 8 cut(s) 1047, 1259, 1391, 1600, 1765, 1798, 2209, 2276
LweI GCATC 4 cut(s) 348, 931, 1440, 1851
MaeI CTAG 7 cut(s) 186, 579, 857, 1160, 1428, 1947, 2486
MaeII ACGT 2 cut(s) 34, 797
MaeIII GTNAC 6 cut(s) 193, 376, 1087, 1285, 1884, 1996
MalI GATC 8 cut(s) 657, 1434, 1689, 2127, 2140, 2289, 2438, 2468
MboI GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
MflI RGATCY 2 cut(s) 2287, 2436
MlyI GAGTC 3 cut(s) 116, 816, 1034
MmeI TCCRAC 2 cut(s) 144, 1177
Mph1103I ATGCAT 2 cut(s) 1207, 1465
MroXI GAANNNNTTC 2 cut(s) 1851, 2149
MseI TTAA 7 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172
MslI CAYNNNNRTG 4 cut(s) 86, 309, 608, 663
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 1730, 1766
Mva1269I GAATGC 3 cut(s) 240, 340, 1606
MvaI CCWGG 2 cut(s) 1730, 1766
NcoI CCATGG 1 cut(s) 1627
NdeII GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
NlaIV GGNNCC 2 cut(s) 316, 817
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 3 cut(s) 1087, 1884, 1996
NsiI ATGCAT 2 cut(s) 1207, 1465
NspI RCATGY 3 cut(s) 764, 1008, 2229
NspV TTCGAA 1 cut(s) 332
PaeI GCATGC 1 cut(s) 1008
PagI TCATGA 3 cut(s) 1359, 1905, 1960
PceI AGGCCT 1 cut(s) 1176
PciSI GCTCTTC 1 cut(s) 1663
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 3 cut(s) 240, 340, 1606
PdmI GAANNNNTTC 2 cut(s) 1851, 2149
PfeI GAWTC 6 cut(s) 731, 878, 1147, 1423, 1487, 2300
PflFI GACNNNGTC 1 cut(s) 1994
PflMI CCANNNNNTGG 1 cut(s) 1596
PkrI GCNGC 9 cut(s) 759, 1062, 1249, 1381, 1615, 1755, 1813, 2224, 2266
PleI GAGTC 3 cut(s) 116, 815, 1033
PpsI GAGTC 3 cut(s) 116, 815, 1033
Ppu21I YACGTR 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 315
PshBI ATTAAT 1 cut(s) 1401
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 1728, 1764
PspFI CCCAGC 1 cut(s) 517
PspGI CCWGG 2 cut(s) 1728, 1764
PspN4I GGNNCC 2 cut(s) 316, 817
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
PstI CTGCAG 2 cut(s) 576, 1381
PsuI RGATCY 2 cut(s) 2287, 2436
PsyI GACNNNGTC 1 cut(s) 1994
RsaI GTAC 5 cut(s) 5, 292, 505, 2338, 2454
RsaNI GTAC 5 cut(s) 4, 291, 504, 2337, 2453
RseI CAYNNNNRTG 4 cut(s) 86, 309, 608, 663
SapI GCTCTTC 1 cut(s) 1663
SaqAI TTAA 7 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172
SatI GCNGC 9 cut(s) 758, 1061, 1248, 1380, 1614, 1754, 1812, 2223, 2265
Sau3AI GATC 8 cut(s) 655, 1432, 1687, 2125, 2138, 2287, 2436, 2466
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 2 cut(s) 505, 2338
SchI GAGTC 3 cut(s) 116, 816, 1034
ScrFI CCNGG 2 cut(s) 1730, 1766
SfaNI GCATC 4 cut(s) 348, 931, 1440, 1851
SfcI CTRYAG 4 cut(s) 492, 572, 1377, 2076
SfuI TTCGAA 1 cut(s) 332
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 4 cut(s) 86, 309, 608, 663
SmlI CTYRAG 3 cut(s) 1549, 1634, 2279
SmoI CTYRAG 3 cut(s) 1549, 1634, 2279
SpeI ACTAGT 2 cut(s) 578, 856
SphI GCATGC 1 cut(s) 1008
SseBI AGGCCT 1 cut(s) 1176
SsiI CCGC 5 cut(s) 757, 813, 1063, 1836, 2209
SspMI CTAG 7 cut(s) 186, 579, 857, 1160, 1428, 1947, 2486
StuI AGGCCT 1 cut(s) 1176
StyD4I CCNGG 2 cut(s) 1728, 1764
StyI CCWWGG 1 cut(s) 1627
TaaI ACNGT 4 cut(s) 741, 790, 1579, 2452
TaiI ACGT 2 cut(s) 37, 800
TaqI TCGA 7 cut(s) 8, 24, 92, 332, 340, 794, 1938
TatI WGTACW 3 cut(s) 3, 503, 2336
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 6 cut(s) 731, 878, 1147, 1423, 1487, 2300
Tru1I TTAA 7 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172
Tru9I TTAA 7 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172
TseFI GTSAC 3 cut(s) 1087, 1884, 1996
TseI GCWGC 8 cut(s) 1060, 1247, 1379, 1613, 1753, 1811, 2222, 2264
Tsp45I GTSAC 3 cut(s) 1087, 1884, 1996
Tth111I GACNNNGTC 1 cut(s) 1994
Van91I CCANNNNNTGG 1 cut(s) 1596
VpaK11BI GGWCC 1 cut(s) 315
VspI ATTAAT 1 cut(s) 1401
XapI RAATTY 8 cut(s) 11, 595, 688, 778, 846, 1127, 1294, 2232
XceI RCATGY 3 cut(s) 764, 1008, 2229
XmnI GAANNNNTTC 2 cut(s) 1851, 2149
XspI CTAG 7 cut(s) 186, 579, 857, 1160, 1428, 1947, 2486
ZrmI AGTACT 2 cut(s) 505, 2338
Zsp2I ATGCAT 2 cut(s) 1207, 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.