FvH4_3g15200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013464
Physical Location & Seq
Forward (+)
9443501 .. 9447002
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15200.t1

Sequence Viewer

Length: 2811 bp
ATGTACTCGAAATTTGGGCGTATTGGGTATGCACGCAAGGTGTTTGATGATATTCCTGAGAGAAATGAAGCTTCTTGGAACACGATGATGTCGAGCTATGTGAGAGTGGGGTTGTATTCTGACTCGGTTAGGTTCTTTTGTGAGATGGTTGGGTGTGGGGCTAGGCCGAGTGGGTTTGTCATTGCGAGTTTGGTTACTGCGTGTGATAAGGCTGGCTCTATGTTTTCTGAAGGGCTGCAAGTTCATGGCTTTGTGGTGAAAAGTGGGTTGTTGTGTGATGTTTTTGTGGGTACTTCTGTTTTGCATTTTTATGGCACCTATGGTGTTGTTTTGAATGCTCGAAAAATCTTTGAGGAGATGCCAGAGAAGAATGTAGTTACTTGGACTTCTTTGATTGTTGGGTATTCTAGTGGTGGAGATTTGGGAGAAGTGATGAGTATTTATAAGCATATGAGGTGCGAAGGAGTATGTTGCAATGATAACACTTTGGCGATAGTGTTTAGTACTTGTGGGGCGCTTGGGGATGAGTTATTGGGTGAGCAAGTTCTTGGAGATGTTGTGAAACTAGGTTTGCAGAGTAGCGTTTCTGTTGCAAATTCCCTCATATCCATGTATGGTAGCTTTGGTAATGTGGGTGAGGCATGCTATGTATTCAATCACATGGATGAAAGGGACACTATCTCATGGAATTCGATTATTTCTGCTAATGTGCAACATGGGCTCTGTAAAGAATCATTATGGTTTTTTCATCGTATGCGGCATGTAAACAAAGAAGTGAATTCTATAACAGTTTCAACGTTGTTGGGCGTCTGCGGGTCCACAGATAATCTGAAGTGGGGCGGTGGAATACATGGACTGGCAGTGAAACTGGGGATGGAATCAAATGTTTGTGTTGGAAATACTCTTTTAAGTATGTATTCTGAGGCTGGAAGATCTGAAGATGCTGAATTAGTTTTTGAAAGAATGACAGAGAAGGATATTATCTCATGGAACTCTATGTTAGCAAGCTATGTTCAGAATGAGGAATCCCAAAATGCCCTCAAACATTTTGCTGAAATGCTGCGGATGAGAAAACCAATAAATTACGTGACTTTAACAAGTGCATTGTCTGCCTGTTCGAATCTGGAATTTTTAGTTGAAGGAGAGATACTTCATGCTATTGCAGTCATTGCAGGCCTAAAAGACAATCTGATAGTCGGAAATGCATTAGTTACCATGTATGGGAAGCTTAGTAAGACACGTGAAGCAGTGAAGGTATTACAAACGATGCCCAAGCGAGATCAAGTTACTTGGAATTCCCTCCTTGGTGGTTATGCTGAAAACAAAGAACCAGATGAGGTAATCACAGCTTTTAAACTCATGAGAAAAGAAGGAACTCCAGCAAACTACATTACAATAATTAACGTTCTTGGTGCGTTCCTGATTCCTAGTGATCTACTAGCACATGGGATGCCCATCCACGCACTCATAGTTTCAACAGGATTTGAATCAGAAAAGTATGTGCAGAGTTCCCTTATTACAATGTATGCTAAGTGTGGTGATTTGAACTCAAGTAACTCCATATTTAGTGGATTAACTGTCAAGAACTCCATTGCATGGAATGCAATCATTGCTGCAAATGCTAATCATGGCCTTGAGGAAGCCTTGAAACTTGTTCTGATGATGGGAAGAGCTGGAGTGGACTTCGATCAGTTCAGCTTATCTGTCGCACTTTCTGTTAGTGCGGACCTGGCTATGTTGGTGGAAGGCCAGCAGCTTCATGGTCTGGTAGTTAAGCTTGGTTTTGACACAGACCATTATATTACAAATGCTGCGATGGATATGTATGGAAAGTGCGGGGAGATGGAAGATGTTTTGAAGATACTTCCCTCACCAACCATCAGGTCACGATTATCATGGAACATCTTGATATCATCCTTTGCCAAACATGGGTGTTTCGAGAAGGCTAGGGAAAGCTTTCATGAAATGGTAAGTCTGGGTGTGAAACCTGACCACGTGACCTTTGTCTCACTTCTCTCTGCATGTAGTCATGGGGGTCTTGTGGATGATGGTCTTGCATACTATAATGCAATGATTACAGAGTTTGGTGTCCAACCAGCAATAGAACATTGTGTGTGCGTAATTGATCTCCTTGGGCGATCAGGGAGGCTTTCTGATGCTGAAAATTTTATTAAAGATATGCCAGTCCCCCCAAATGACCTTGTGTGGCGGAGCTTGTTGGCTGCATGTAAAACTCATCGCAATTTGGAATTAGGGAGGAAAGCAGCAGACCATCTTCTTGAGTTAGACCCAGCAGACGATTCAGCTTATGTTCTTTTCTCAAATGTTTGTGCAAGTACTGGAAGATGGGAGGAAGTAGAGAATGTAAGGAGGCAAATGGGAGCGAGAAGCATAATAAAGAAGCCAGCTTGTAGTTGGGTCAAGTTGAAAAGTGAGGTGAGTAAATTTGGGATGGGAGAAAAGTCTCACCCAAAAACAGAGCAGATTTATGCTAAGTTGGGAGAGCTTATGAAGATGATTAGAGAAGCAGGCTATGTTCCTGATACAAGCTACTCCCTGCAAGATACTGATGAAGAACAGAAGGAGCAAAATCTTTGGAACCACAGTGAGAGAATTGCCCTTGCTTTCGGGTTGATCAGTACTCCAGAAGGTTCACCTGTTAAGATTTTCAAGAATCTTCGAGTCTGTGGTGATTGCCATTCTGTGTACAAGCATGCTAGTGCAGTAGTTGGGCGGAAGATCATATTGAGGGATCCATACCGGTTTCACCATTTCACTGATGGCAAATGTTCTTGTTCTGACTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

937

Amino Acids

103.15

Weight (kDa)

5.99

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 123 - 170 3.1e-07 PPR repeat family
PPR_2 PF13041 325 - 373 7.1e-06 PPR repeat family
PPR_2 PF13041 427 - 466 9e-06 PPR repeat family
PPR PF01535 632 - 661 3.1e-07 PPR repeat
PPR_2 PF13041 632 - 676 3.3e-11 PPR repeat family
E_motif PF20431 746 - 807 1.2e-20 E motif
DYW_deaminase PF14432 844 - 936 5.7e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 1596
AciI CCGC 8 cut(s) 757, 813, 840, 1063, 1724, 1836, 2209, 2734
AclI AACGTT 2 cut(s) 797, 1404
AclWI GGATC 2 cut(s) 2747, 2760
AcsI RAATTY 8 cut(s) 11, 595, 688, 778, 1127, 1294, 2164, 2444
AcuI CTGAAG 3 cut(s) 249, 851, 957
AcvI CACGTG 2 cut(s) 1241, 1996
AcyI GRCGYC 1 cut(s) 807
AfaI GTAC 6 cut(s) 5, 292, 505, 2338, 2641, 2708
AfiI CCNNNNNNNGG 3 cut(s) 1221, 1596, 1929
AflIII ACRYGT 1 cut(s) 1238
AgeI ACCGGT 1 cut(s) 2760
AjnI CCWGG 1 cut(s) 1728
Alw26I GTCTC 2 cut(s) 2011, 2469
AlwI GGATC 2 cut(s) 2747, 2760
AoxI GGCC 4 cut(s) 164, 1174, 1630, 1747
ApeKI GCWGC 7 cut(s) 235, 1060, 1613, 1753, 1811, 2222, 2264
ApoI RAATTY 8 cut(s) 11, 595, 688, 778, 1127, 1294, 2164, 2444
AsiGI ACCGGT 1 cut(s) 2760
Asp700I GAANNNNTTC 1 cut(s) 1956
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 2 cut(s) 816, 1726
AsuII TTCGAA 1 cut(s) 1118
AvaII GGWCC 2 cut(s) 816, 1726
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BamHI GGATCC 1 cut(s) 2752
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 723
BarI GAAGNNNNNNTAC 2 cut(s) 1131, 1163
BbrPI CACGTG 2 cut(s) 1241, 1996
BbvI GCAGC 7 cut(s) 222, 1047, 1600, 1765, 1798, 2209, 2276
BciT130I CCWGG 1 cut(s) 1730
BclI TGATCA 1 cut(s) 2634
BcoDI GTCTC 2 cut(s) 2011, 2469
BfaI CTAG 7 cut(s) 162, 408, 566, 1428, 1439, 1947, 2718
BfoI RGCGCY 1 cut(s) 518
BglII AGATCT 1 cut(s) 932
BisI GCNGC 8 cut(s) 236, 758, 1061, 1614, 1754, 1812, 2223, 2265
BlsI GCNGC 8 cut(s) 237, 759, 1062, 1615, 1755, 1813, 2224, 2266
BmcAI AGTACT 3 cut(s) 505, 2338, 2641
Bme1390I CCNGG 1 cut(s) 1730
Bme18I GGWCC 2 cut(s) 816, 1726
BmgT120I GGNCC 2 cut(s) 816, 1726
BmiI GGNNCC 4 cut(s) 316, 817, 2600, 2754
BmrFI CCNGG 1 cut(s) 1730
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 5 cut(s) 348, 931, 1257, 1440, 2146
BmuI ACTGGG 1 cut(s) 878
BoxI GACNNNNGTC 1 cut(s) 2003
BpmI CTGGAG 3 cut(s) 1362, 1695, 2628
Bpu14I TTCGAA 1 cut(s) 1118
BpuEI CTTGAG 3 cut(s) 1534, 1655, 2300
BsaAI YACGTR 3 cut(s) 1087, 1241, 1996
BsaBI GATNNNNATC 2 cut(s) 1454, 1486
BsaHI GRCGYC 1 cut(s) 807
BsaJI CCNNGG 2 cut(s) 1303, 2131
BsaWI WCCGGW 1 cut(s) 2760
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 1221, 1596, 1929
Bse118I RCCGGY 1 cut(s) 2760
Bse1I ACTGG 4 cut(s) 861, 873, 2183, 2344
Bse3DI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
Bse8I GATNNNNATC 2 cut(s) 1454, 1486
BseBI CCWGG 1 cut(s) 1730
BseDI CCNNGG 2 cut(s) 1303, 2131
BseGI GGATG 9 cut(s) 529, 670, 879, 1071, 1455, 1455, 1913, 2050, 2457
BseJI GATNNNNATC 2 cut(s) 1454, 1486
BseLI CCNNNNNNNGG 3 cut(s) 1221, 1596, 1929
BseMI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
BseMII CTCAG 2 cut(s) 48, 912
BseNI ACTGG 4 cut(s) 861, 873, 2183, 2344
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 7 cut(s) 222, 1047, 1600, 1765, 1798, 2209, 2276
BseYI CCCAGC 1 cut(s) 2290
BsgI GTGCAG 2 cut(s) 1523, 2742
BshFI GGCC 4 cut(s) 166, 1176, 1632, 1749
BshNI GGYRCC 1 cut(s) 314
BshTI ACCGGT 1 cut(s) 2760
BsiSI CCGG 1 cut(s) 2761
BslFI GGGAC 2 cut(s) 686, 2171
BslI CCNNNNNNNGG 3 cut(s) 1221, 1596, 1929
BsmAI GTCTC 2 cut(s) 2011, 2469
BsmFI GGGAC 2 cut(s) 686, 2171
BsmI GAATGC 2 cut(s) 340, 1606
BsnI GGCC 4 cut(s) 166, 1176, 1632, 1749
Bsp119I TTCGAA 1 cut(s) 1118
Bsp1286I GDGCHC 1 cut(s) 723
Bsp1407I TGTACA 1 cut(s) 2706
Bsp143I GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
BspACI CCGC 8 cut(s) 757, 813, 840, 1063, 1724, 1836, 2209, 2734
BspANI GGCC 4 cut(s) 166, 1176, 1632, 1749
BspCNI CTCAG 2 cut(s) 49, 913
BspHI TCATGA 2 cut(s) 1359, 1960
BspLI GGNNCC 4 cut(s) 316, 817, 2600, 2754
BspPI GGATC 2 cut(s) 2747, 2760
BspQI GCTCTTC 1 cut(s) 1663
BspT104I TTCGAA 1 cut(s) 1118
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
BsrFI RCCGGY 1 cut(s) 2760
BsrGI TGTACA 1 cut(s) 2706
BsrI ACTGG 4 cut(s) 861, 873, 2183, 2344
BssAI RCCGGY 1 cut(s) 2760
BssECI CCNNGG 2 cut(s) 1303, 2131
BssMI GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
BssNI GRCGYC 1 cut(s) 807
BssT1I CCWWGG 2 cut(s) 1303, 2131
Bst2UI CCWGG 1 cut(s) 1730
Bst4CI ACNGT 3 cut(s) 790, 1579, 2606
Bst6I CTCTTC 1 cut(s) 1663
BstACI GRCGYC 1 cut(s) 807
BstAPI GCANNNNNTGC 4 cut(s) 1109, 1169, 1601, 1610
BstAUI TGTACA 1 cut(s) 2706
BstBAI YACGTR 3 cut(s) 1087, 1241, 1996
BstBI TTCGAA 1 cut(s) 1118
BstC8I GCNNGC 9 cut(s) 34, 214, 643, 1006, 1174, 1751, 2406, 2530, 2715
BstDEI CTNAG 5 cut(s) 57, 921, 1229, 1530, 2493
BstF5I GGATG 9 cut(s) 529, 670, 879, 1071, 1455, 1455, 1913, 2050, 2457
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 9 cut(s) 935, 1282, 1435, 1690, 2128, 2141, 2637, 2742, 2755
BstMAI GTCTC 2 cut(s) 2011, 2469
BstMBI GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
BstMWI GCNNNNNNNGC 7 cut(s) 718, 1109, 1169, 1601, 1610, 1619, 1730
BstNI CCWGG 1 cut(s) 1730
BstNSI RCATGY 5 cut(s) 645, 764, 2025, 2229, 2717
BstPAI GACNNNNGTC 1 cut(s) 2003
BstSCI CCNGG 1 cut(s) 1728
BstV1I GCAGC 7 cut(s) 222, 1047, 1600, 1765, 1798, 2209, 2276
BstX2I RGATCY 2 cut(s) 932, 2752
BstYI RGATCY 2 cut(s) 932, 2752
BsuRI GGCC 4 cut(s) 166, 1176, 1632, 1749
BtgZI GCGATG 2 cut(s) 1829, 2222
BtsCI GGATG 9 cut(s) 529, 670, 879, 1071, 1455, 1455, 1913, 2050, 2457
BtsI GCAGTG 2 cut(s) 867, 1254
BtsIMutI CAGTG 4 cut(s) 867, 1254, 2611, 2775
Cac8I GCNNGC 9 cut(s) 34, 214, 643, 1006, 1174, 1751, 2406, 2530, 2715
CciI TCATGA 2 cut(s) 1359, 1960
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 2760
Cfr13I GGNCC 2 cut(s) 816, 1726
CseI GACGC 1 cut(s) 796
Csp6I GTAC 6 cut(s) 4, 291, 504, 2337, 2640, 2707
CspAI ACCGGT 1 cut(s) 2760
CviQI GTAC 6 cut(s) 4, 291, 504, 2337, 2640, 2707
DdeI CTNAG 5 cut(s) 57, 921, 1229, 1530, 2493
DpnI GATC 9 cut(s) 934, 1281, 1434, 1689, 2127, 2140, 2636, 2741, 2754
DpnII GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
DraI TTTAAA 1 cut(s) 1354
Eam1104I CTCTTC 1 cut(s) 1663
EarI CTCTTC 1 cut(s) 1663
EciI GGCGGA 2 cut(s) 2224, 2749
Eco130I CCWWGG 2 cut(s) 1303, 2131
Eco147I AGGCCT 1 cut(s) 1176
Eco24I GRGCYC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 1911
Eco47I GGWCC 2 cut(s) 816, 1726
Eco57I CTGAAG 3 cut(s) 249, 851, 957
Eco72I CACGTG 2 cut(s) 1241, 1996
EcoRI GAATTC 3 cut(s) 688, 778, 1294
EcoRII CCWGG 1 cut(s) 1728
EcoRV GATATC 1 cut(s) 1911
EcoT14I CCWWGG 2 cut(s) 1303, 2131
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 1303, 2131
FaqI GGGAC 2 cut(s) 686, 2171
FauI CCCGC 2 cut(s) 806, 1829
FauNDI CATATG 1 cut(s) 450
FbaI TGATCA 1 cut(s) 2634
Fnu4HI GCNGC 8 cut(s) 236, 758, 1061, 1614, 1754, 1812, 2223, 2265
FokI GGATG 9 cut(s) 536, 677, 886, 1078, 1442, 1462, 1900, 2057, 2464
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 8 cut(s) 236, 758, 1061, 1614, 1754, 1812, 2223, 2265
FspBI CTAG 7 cut(s) 162, 408, 566, 1428, 1439, 1947, 2718
GlaI GCGC 1 cut(s) 516
GluI GCNGC 8 cut(s) 236, 758, 1061, 1614, 1754, 1812, 2223, 2265
GsaI CCCAGC 1 cut(s) 2294
GsuI CTGGAG 3 cut(s) 1362, 1695, 2628
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 4 cut(s) 166, 1176, 1632, 1749
HapII CCGG 1 cut(s) 2761
HgaI GACGC 1 cut(s) 796
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 807
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 4 cut(s) 69, 1226, 1775, 1954
HpaII CCGG 1 cut(s) 2761
Hpy166II GTNNAC 5 cut(s) 766, 819, 1681, 2654, 2707
Hpy8I GTNNAC 5 cut(s) 766, 819, 1681, 2654, 2707
HpyCH4III ACNGT 3 cut(s) 790, 1579, 2606
HpyCH4IV ACGT 5 cut(s) 797, 1086, 1240, 1404, 1995
HpyF10VI GCNNNNNNNGC 7 cut(s) 718, 1109, 1169, 1601, 1610, 1619, 1730
HpyF3I CTNAG 5 cut(s) 57, 921, 1229, 1530, 2493
HpySE526I ACGT 5 cut(s) 797, 1086, 1240, 1404, 1995
Hsp92I GRCGYC 1 cut(s) 807
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 2634
Kzo9I GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
LguI GCTCTTC 1 cut(s) 1663
LmnI GCTCC 3 cut(s) 2211, 2381, 2584
Lsp1109I GCAGC 7 cut(s) 222, 1047, 1600, 1765, 1798, 2209, 2276
LweI GCATC 5 cut(s) 348, 931, 1257, 1440, 2146
MaeI CTAG 7 cut(s) 162, 408, 566, 1428, 1439, 1947, 2718
MaeII ACGT 5 cut(s) 797, 1086, 1240, 1404, 1995
MaeIII GTNAC 8 cut(s) 193, 376, 1087, 1210, 1285, 1553, 1884, 1996
MalI GATC 9 cut(s) 934, 1281, 1434, 1689, 2127, 2140, 2636, 2741, 2754
MboI GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
MflI RGATCY 2 cut(s) 932, 2752
MhlI GDGCHC 1 cut(s) 723
MlyI GAGTC 2 cut(s) 116, 2691
MmeI TCCRAC 3 cut(s) 874, 1177, 2116
Mph1103I ATGCAT 1 cut(s) 1207
MroXI GAANNNNTTC 1 cut(s) 1956
MseI TTAA 8 cut(s) 908, 1094, 1353, 1401, 1574, 1773, 2172, 2661
MslI CAYNNNNRTG 5 cut(s) 86, 309, 608, 663, 2718
MspI CCGG 1 cut(s) 2761
MspR9I CCNGG 1 cut(s) 1730
Mva1269I GAATGC 2 cut(s) 340, 1606
MvaI CCWGG 1 cut(s) 1730
MwoI GCNNNNNNNGC 7 cut(s) 718, 1109, 1169, 1601, 1610, 1619, 1730
NdeI CATATG 1 cut(s) 450
NdeII GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
NlaIV GGNNCC 4 cut(s) 316, 817, 2600, 2754
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 3 cut(s) 1087, 1884, 1996
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 5 cut(s) 645, 764, 2025, 2229, 2717
NspV TTCGAA 1 cut(s) 1118
PaeI GCATGC 2 cut(s) 645, 2717
PagI TCATGA 2 cut(s) 1359, 1960
PceI AGGCCT 1 cut(s) 1176
PciSI GCTCTTC 1 cut(s) 1663
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 2 cut(s) 340, 1606
PdmI GAANNNNTTC 1 cut(s) 1956
PfeI GAWTC 8 cut(s) 731, 878, 1025, 1120, 1423, 1487, 2300, 2674
PflMI CCANNNNNTGG 1 cut(s) 1596
PinAI ACCGGT 1 cut(s) 2760
PkrI GCNGC 8 cut(s) 237, 759, 1062, 1615, 1755, 1813, 2224, 2266
PleI GAGTC 2 cut(s) 116, 2690
PmaCI CACGTG 2 cut(s) 1241, 1996
PmlI CACGTG 2 cut(s) 1241, 1996
PpsI GAGTC 2 cut(s) 116, 2690
Ppu21I YACGTR 3 cut(s) 1087, 1241, 1996
PshAI GACNNNNGTC 1 cut(s) 2003
PsiI TTATAA 1 cut(s) 444
Psp1406I AACGTT 2 cut(s) 797, 1404
Psp6I CCWGG 1 cut(s) 1728
PspCI CACGTG 2 cut(s) 1241, 1996
PspFI CCCAGC 1 cut(s) 2290
PspGI CCWGG 1 cut(s) 1728
PspN4I GGNNCC 4 cut(s) 316, 817, 2600, 2754
PspPI GGNCC 2 cut(s) 816, 1726
PsuI RGATCY 2 cut(s) 932, 2752
RsaI GTAC 6 cut(s) 5, 292, 505, 2338, 2641, 2708
RsaNI GTAC 6 cut(s) 4, 291, 504, 2337, 2640, 2707
RseI CAYNNNNRTG 5 cut(s) 86, 309, 608, 663, 2718
SapI GCTCTTC 1 cut(s) 1663
SaqAI TTAA 8 cut(s) 908, 1094, 1353, 1401, 1574, 1773, 2172, 2661
SatI GCNGC 8 cut(s) 236, 758, 1061, 1614, 1754, 1812, 2223, 2265
Sau3AI GATC 9 cut(s) 932, 1279, 1432, 1687, 2125, 2138, 2634, 2739, 2752
Sau96I GGNCC 2 cut(s) 816, 1726
ScaI AGTACT 3 cut(s) 505, 2338, 2641
SchI GAGTC 2 cut(s) 116, 2691
ScrFI CCNGG 1 cut(s) 1730
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 5 cut(s) 348, 931, 1257, 1440, 2146
SfuI TTCGAA 1 cut(s) 1118
SinI GGWCC 2 cut(s) 816, 1726
SmiMI CAYNNNNRTG 5 cut(s) 86, 309, 608, 663, 2718
SmlI CTYRAG 3 cut(s) 1549, 1634, 2279
SmoI CTYRAG 3 cut(s) 1549, 1634, 2279
SphI GCATGC 2 cut(s) 645, 2717
SseBI AGGCCT 1 cut(s) 1176
SsiI CCGC 8 cut(s) 757, 813, 840, 1063, 1724, 1836, 2209, 2734
SspMI CTAG 7 cut(s) 162, 408, 566, 1428, 1439, 1947, 2718
StuI AGGCCT 1 cut(s) 1176
StyD4I CCNGG 1 cut(s) 1728
StyI CCWWGG 2 cut(s) 1303, 2131
TaaI ACNGT 3 cut(s) 790, 1579, 2606
TaiI ACGT 5 cut(s) 800, 1089, 1243, 1407, 1998
TaqI TCGA 8 cut(s) 8, 92, 340, 692, 1118, 1686, 1938, 2680
TatI WGTACW 5 cut(s) 3, 503, 2336, 2639, 2706
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 8 cut(s) 731, 878, 1025, 1120, 1423, 1487, 2300, 2674
Tru1I TTAA 8 cut(s) 908, 1094, 1353, 1401, 1574, 1773, 2172, 2661
Tru9I TTAA 8 cut(s) 908, 1094, 1353, 1401, 1574, 1773, 2172, 2661
TscAI CASTG 4 cut(s) 867, 1254, 2611, 2782
TseFI GTSAC 3 cut(s) 1087, 1884, 1996
TseI GCWGC 7 cut(s) 235, 1060, 1613, 1753, 1811, 2222, 2264
Tsp45I GTSAC 3 cut(s) 1087, 1884, 1996
TspRI CASTG 4 cut(s) 867, 1254, 2611, 2782
Van91I CCANNNNNTGG 1 cut(s) 1596
VpaK11BI GGWCC 2 cut(s) 816, 1726
XapI RAATTY 8 cut(s) 11, 595, 688, 778, 1127, 1294, 2164, 2444
XceI RCATGY 5 cut(s) 645, 764, 2025, 2229, 2717
XcmI CCANNNNNNNNNTGG 3 cut(s) 1757, 2412, 2777
XmnI GAANNNNTTC 1 cut(s) 1956
XspI CTAG 7 cut(s) 162, 408, 566, 1428, 1439, 1947, 2718
ZrmI AGTACT 3 cut(s) 505, 2338, 2641
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.