pycom10g17620

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013464
Physical Location & Seq
Reverse (-)
20856826 .. 20859636
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17620.1

Sequence Viewer

Length: 2811 bp
ATGTACTCGAAGTTTGGTCGTATTGGTTATGCAAGGTATGTGTTTGATAATATTCCTGAGAGAAATGACGCTTCTTGGAACACGATGATATCGAGTTATGTACGAGTGGGGTTGTATTCCGAATCGATTGGATTCTTCTGCGAAATGATTGGCTGCGGTGTTAAGCCAAGCGGGTTTGTCATTGCTAGTTTGATGACTGCGTGTGATAAGTCTGCTCGTAGGTTTAGTGAAGGGTTGCAGGTCCATGGTTTTGTGGTTAAAATTGGTTTGTTTTGTGATGTCTTTGTTGGGACTTCGCTTTTGCACTTCTATGGCACCTATGGTTTTGTGTCTTCTGCTCAAAAGATTTTTGAGGAGATGCCGGAGAAGAATGTGGTTACTTGGACTTCTTTGATTGTTGGCCGTTCAACTAATAGAGATTCGGAAGAAGTTATAAACATATATAAGCGTATGATATATGAAGGAGTGTGTTGCAATGATAACACATTTGCTATAGTCATTAGTACTTGTGGGATGCTAGGGAATGAACTGTTAGGTCATCAAGTTCTTGGTCATGTCGTGAAACTTGGACTAGAGACTAGTGTTTCTGTAGCAAACTCTCTCATATCCATGTATGGTAGCTGCGGAAATGTAGAAGCGGCCTGCTACGTCTTTGATCAGATGGATGAGCGTGATATAATCTCATGGAATTCGATTATTTCTGCAGATGCACAAAATGGGCTTTGCGAAGAATCATTAAGGCACTTTCACTGTATGCGGAGTGTTAATAAAGAGGTGAATTCCACAACGCTTTCGACATTGTTGACAGTCTCTGGTTCCTCAGAGAAACTGAAGTGGGGCAGTGGAATTCATGGCTTAGTTGTAAAACTAGGGTTGGAGTCAAATGTCTGTGTTTGCAATACTCTTTTAAGTATGTATTCGGAGGCTGGAAGGTCCAAAGATGCTGAGTTAGTTTTCCAAAGAATGATAGAGAAGGATATAATCTCATGGAACTCGATGTTAGCATGCTATGTGCAGAATGATGAGTACCAAAATGCCTTGGAACTTTTCTCTGAAATGCTTCGGATGAGAAAACCAGTAAATTATGTGACTCTAACAAGTGCACTATCTGCTTGTCCGAACCCTGAATTTCTCATTGAAGGCAAGATTCTTCATGCTCTTGCAGTCTTTGTAGGCCTACAAGACAATCTGATAATTGGCAATGCACTGGTTACAATGTATGGCAAGTTTGGTATGATGGTTGAAGCAGAAAAGGTGCTGCAAATAATGCCCAACCGAGATCAAGTTACTTGGAATGCCCTCATAGGTGGTTACGCTGAGAGCAAAGAACCAAATGAGGCAATAAAAGCTTTCAAGTTCATGAGAGAAGAAGGAACTCCAGCAAACTACATTACAATAATCAATGTCCTTGGTGCTTTTCTGACTCCTGGCGATCTTCTCAAACATGGAATGCCCATCCATGCGCATATAGTTCTAACAGGATTTGATTCGGACAAGCATGTGCAGAGTACCCTCATAACAATGTATGCTAAGTGTGGTGATTTAAATTCAAGTAATTCCATATTCAATGGATTAGCTTTCAAGAACTCTATCGCATGGAATGCGCTCATATCTGCAAATGCTAATCATGGCTTAGAGGAAGCTTTGAAACTTGTAGTGATGATGAGAAAAGCTGGAGTGAACTTAGATCAGTTCAGCCTTTCTGTGGCACTTTCTGTTAGTGCAGACCTGGCTATGTTGGAGGAAGGCGAACAACTTCATGCCTTGGTGGTTAAGCTTGGTTTTGACTCAGACAATTACGTTACAAATGCTGCCATGGATATGTATGGAAAATGCGGAAATATGAAAGATGTTTTGAAATTACTTCCTTTGCCAACCAGCAGATCACGATTATCATGGAACATTTTGATATCGTCTTATGCCAAACATGGGTGTTTCCCGAAGGCTAGGGAAGCTTTTCATGAAATGCTAAATCTTGGCGTGAAACCAGATCATGTTACCTTTGTTTCACTTCTGTCTGCTTGCAGTCATGGGGGTCTGGTGGATGATGGTCTTGCGTACTACAATTCAATGACCACAGAGTTTGGCGTCCCACCAGGAATAGAGCATTGTGTGTGCATGATTGATCTTCTTGGACGATCTGGAAGGCTTGCTGAAGCTGAAAATTTCATTAAAGGAATGGTTGTCCCGCCAAATGACCTTGTGTGGCGGAGCTTGCTGGCTGCATGTAAAATCCATCGTAATGTGGAGTTAGCGAGGAAAGCTGCAGAACATCTCCTAGAACTAGATCCATCGGACGATTCAGCCTATGTTCTTTTCTCAAATGTATGTGCAACTACTGGTAGATGGGAGGAAGTAGAGAACGTAAGGAGGCAGATGGGATCGAGAAACATAACGAAGAAGCCTGCGTGCAGTTGGGTCAAGTTGAAAACCGAGGTAAGTAAATTTGGGATGGGAGAGCAGTCCCATCCACAGACAGAGCAAATTTATGCCAAGTTGGGAGAGCTCATGAAGATGATTAGAGAAGCAGGTTATGTCCCGGATACCAGCTATGCACTGCAGGATACAGATGAAGAACAGAAGGAACAAAATCTTTGGAACCACAGTGAGAGAATCGCCCTTGCTTTCGCATTGATCAATACTCCAGAAGGTTCACCAGTTAAGGTTTTCAAGAACCTTCGTGTCTGTGGCGATTGCCATTCTGTCTACAAGCATGTTAGTGCAGTAGTCGGGCAGAAAATCATATTGAGAGATCCTTACCGGTTTCACCATTTCAGCGACGGCAAGTGTTCTTGTTCTGACTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

937

Amino Acids

103.83

Weight (kDa)

6.01

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 25 - 54 6.2e-07 PPR repeat
PPR_2 PF13041 123 - 170 2.1e-06 PPR repeat family
PPR_2 PF13041 325 - 372 1e-07 PPR repeat family
PPR PF01535 328 - 356 3.3e-06 PPR repeat
PPR_2 PF13041 427 - 466 2.9e-07 PPR repeat family
PPR PF01535 429 - 458 5.8e-06 PPR repeat
PPR_2 PF13041 632 - 676 7e-11 PPR repeat family
PPR PF01535 632 - 661 4.3e-07 PPR repeat
E_motif PF20431 746 - 807 1.3e-22 E motif
DYW_deaminase PF14432 844 - 936 2.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
Acc16I TGCGCA 1 cut(s) 1464
Acc36I ACCTGC 2 cut(s) 229, 2519
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 2706
AciI CCGC 8 cut(s) 156, 171, 624, 638, 757, 1836, 2189, 2209
AclWI GGATC 3 cut(s) 2282, 2389, 2747
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 8 cut(s) 688, 778, 846, 1127, 1546, 2164, 2444, 2484
AcuI CTGAAG 2 cut(s) 851, 2175
AcyI GRCGYC 1 cut(s) 2088
AfaI GTAC 6 cut(s) 5, 102, 505, 1028, 1510, 2060
AfiI CCNNNNNNNGG 2 cut(s) 1705, 1929
AgeI ACCGGT 1 cut(s) 2760
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 3 cut(s) 1426, 1728, 2095
Alw21I GWGCWC 2 cut(s) 1105, 2508
Alw26I GTCTC 2 cut(s) 569, 814
Alw44I GTGCAC 1 cut(s) 1101
AlwI GGATC 3 cut(s) 2282, 2389, 2747
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 3 cut(s) 400, 639, 1174
ApaLI GTGCAC 1 cut(s) 1101
ApeKI GCWGC 6 cut(s) 153, 621, 1258, 1811, 2222, 2264
ApoI RAATTY 8 cut(s) 688, 778, 846, 1127, 1546, 2164, 2444, 2484
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 2760
Asp700I GAANNNNTTC 3 cut(s) 1059, 1755, 1956
AspLEI GCGC 2 cut(s) 1465, 1606
AspS9I GGNCC 2 cut(s) 241, 933
AsuC2I CCSGG 1 cut(s) 2540
AsuHPI GGTGA 4 cut(s) 787, 1550, 2646, 2759
AvaII GGWCC 2 cut(s) 241, 933
BaeGI GKGCMC 1 cut(s) 1105
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 2508
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 1105, 2508
BbvI GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
BceAI ACGGC 2 cut(s) 387, 2797
BciT130I CCWGG 3 cut(s) 1428, 1730, 2097
BciVI GTATCC 2 cut(s) 2536, 2557
BclI TGATCA 2 cut(s) 655, 2634
BcnI CCSGG 1 cut(s) 2540
BcoDI GTCTC 2 cut(s) 569, 814
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
BfmI CTRYAG 5 cut(s) 492, 588, 702, 2265, 2558
BfuAI ACCTGC 2 cut(s) 229, 2519
BfuI GTATCC 2 cut(s) 2536, 2557
BisI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
BlsI GCNGC 7 cut(s) 155, 623, 640, 1260, 1813, 2224, 2266
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 4 cut(s) 1428, 1730, 2097, 2540
Bme18I GGWCC 2 cut(s) 241, 933
BmgT120I GGNCC 2 cut(s) 241, 933
BmiI GGNNCC 3 cut(s) 316, 817, 2600
BmrFI CCNGG 4 cut(s) 1428, 1730, 2097, 2540
BmsI GCATC 4 cut(s) 348, 504, 697, 931
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 3 cut(s) 1362, 1695, 2628
BpuMI CCSGG 1 cut(s) 2540
Bsa29I ATCGAT 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 2088
BsaJI CCNNGG 6 cut(s) 244, 1038, 1408, 1764, 1815, 2433
BsaWI WCCGGW 1 cut(s) 2760
Bsc4I CCNNNNNNNGG 2 cut(s) 1705, 1929
Bse118I RCCGGY 1 cut(s) 2760
Bse1I ACTGG 4 cut(s) 1076, 1212, 2344, 2657
Bse3DI GCAATG 3 cut(s) 180, 481, 1207
BseBI CCWGG 3 cut(s) 1428, 1730, 2097
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 6 cut(s) 244, 1038, 1408, 1764, 1815, 2433
BseGI GGATG 7 cut(s) 519, 670, 1071, 1455, 2050, 2457, 2467
BseLI CCNNNNNNNGG 2 cut(s) 1705, 1929
BseMI GCAATG 3 cut(s) 180, 481, 1207
BseMII CTCAG 5 cut(s) 48, 834, 936, 1308, 1803
BseNI ACTGG 4 cut(s) 1076, 1212, 2344, 2657
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 1105
BseXI GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
BsgI GTGCAG 5 cut(s) 1034, 1523, 1743, 2431, 2742
BshFI GGCC 3 cut(s) 402, 641, 1176
BshNI GGYRCC 1 cut(s) 314
BshTI ACCGGT 1 cut(s) 2760
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 1105, 2508
BsiSI CCGG 3 cut(s) 362, 2540, 2761
BslFI GGGAC 5 cut(s) 304, 2075, 2171, 2449, 2522
BslI CCNNNNNNNGG 2 cut(s) 1705, 1929
BsmAI GTCTC 2 cut(s) 569, 814
BsmFI GGGAC 5 cut(s) 304, 2075, 2171, 2449, 2522
BsmI GAATGC 3 cut(s) 1300, 1455, 1606
BsnI GGCC 3 cut(s) 402, 641, 1176
Bsp1286I GDGCHC 2 cut(s) 1105, 2508
Bsp19I CCATGG 2 cut(s) 244, 1815
BspACI CCGC 8 cut(s) 156, 171, 624, 638, 757, 1836, 2189, 2209
BspANI GGCC 3 cut(s) 402, 641, 1176
BspCNI CTCAG 5 cut(s) 49, 833, 937, 1309, 1802
BspDI ATCGAT 1 cut(s) 125
BspHI TCATGA 3 cut(s) 1359, 1960, 2508
BspLI GGNNCC 3 cut(s) 316, 817, 2600
BspMAI CTGCAG 3 cut(s) 706, 2269, 2562
BspMI ACCTGC 2 cut(s) 229, 2519
BspPI GGATC 3 cut(s) 2282, 2389, 2747
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 3 cut(s) 180, 481, 1207
BsrFI RCCGGY 1 cut(s) 2760
BsrI ACTGG 4 cut(s) 1076, 1212, 2344, 2657
BssAI RCCGGY 1 cut(s) 2760
BssECI CCNNGG 6 cut(s) 244, 1038, 1408, 1764, 1815, 2433
BssNI GRCGYC 1 cut(s) 2088
BssT1I CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
Bst2UI CCWGG 3 cut(s) 1428, 1730, 2097
Bst4CI ACNGT 4 cut(s) 531, 752, 808, 2606
BstACI GRCGYC 1 cut(s) 2088
BstAPI GCANNNNNTGC 3 cut(s) 1109, 1267, 1601
BstC8I GCNNGC 8 cut(s) 643, 1006, 2023, 2151, 2216, 2220, 2406, 2410
BstDEI CTNAG 9 cut(s) 57, 820, 856, 945, 1317, 1530, 1633, 1684, 1789
BstDSI CCRYGG 2 cut(s) 244, 1815
BstF5I GGATG 7 cut(s) 519, 670, 1071, 1455, 2050, 2457, 2467
BstHHI GCGC 2 cut(s) 1465, 1606
BstMAI GTCTC 2 cut(s) 569, 814
BstMWI GCNNNNNNNGC 8 cut(s) 1109, 1267, 1346, 1601, 1730, 1952, 2215, 2261
BstNI CCWGG 3 cut(s) 1428, 1730, 2097
BstNSI RCATGY 4 cut(s) 1008, 1502, 2229, 2717
BstSCI CCNGG 4 cut(s) 1426, 1728, 2095, 2538
BstSFI CTRYAG 5 cut(s) 492, 588, 702, 2265, 2558
BstSLI GKGCMC 1 cut(s) 1105
BstV1I GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 2287, 2752
BstYI RGATCY 2 cut(s) 2287, 2752
Bsu15I ATCGAT 1 cut(s) 125
BsuI GTATCC 2 cut(s) 2536, 2557
BsuRI GGCC 3 cut(s) 402, 641, 1176
BsuTUI ATCGAT 1 cut(s) 125
BtgI CCRYGG 2 cut(s) 244, 1815
BtsCI GGATG 7 cut(s) 519, 670, 1071, 1455, 2050, 2457, 2467
BtsI GCAGTG 2 cut(s) 847, 2555
BtsIMutI CAGTG 5 cut(s) 748, 847, 1205, 2555, 2611
BveI ACCTGC 2 cut(s) 229, 2519
Cac8I GCNNGC 8 cut(s) 643, 1006, 2023, 2151, 2216, 2220, 2406, 2410
CaiI CAGNNNCTG 1 cut(s) 812
CciI TCATGA 3 cut(s) 1359, 1960, 2508
CfoI GCGC 2 cut(s) 1465, 1606
Cfr10I RCCGGY 1 cut(s) 2760
Cfr13I GGNCC 2 cut(s) 241, 933
ClaI ATCGAT 1 cut(s) 125
CseI GACGC 2 cut(s) 77, 2077
Csp6I GTAC 6 cut(s) 4, 101, 504, 1027, 1509, 2059
CspAI ACCGGT 1 cut(s) 2760
CspCI CAANNNNNGTGG 2 cut(s) 2065, 2100
CviQI GTAC 6 cut(s) 4, 101, 504, 1027, 1509, 2059
DdeI CTNAG 9 cut(s) 57, 820, 856, 945, 1317, 1530, 1633, 1684, 1789
DraI TTTAAA 1 cut(s) 1545
EaeI YGGCCR 1 cut(s) 400
EciI GGCGGA 1 cut(s) 2224
Ecl136II GAGCTC 1 cut(s) 2506
Eco130I CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
Eco147I AGGCCT 1 cut(s) 1176
Eco24I GRGCYC 1 cut(s) 2508
Eco32I GATATC 2 cut(s) 90, 1911
Eco47I GGWCC 2 cut(s) 241, 933
Eco53kI GAGCTC 1 cut(s) 2506
Eco57I CTGAAG 2 cut(s) 851, 2175
EcoICRI GAGCTC 1 cut(s) 2506
EcoRI GAATTC 3 cut(s) 688, 778, 846
EcoRII CCWGG 3 cut(s) 1426, 1728, 2095
EcoRV GATATC 2 cut(s) 90, 1911
EcoT14I CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
EcoT38I GRGCYC 1 cut(s) 2508
ErhI CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
FaqI GGGAC 5 cut(s) 304, 2075, 2171, 2449, 2522
FauI CCCGC 2 cut(s) 164, 2196
FbaI TGATCA 2 cut(s) 655, 2634
FblI GTMKAC 1 cut(s) 2706
Fnu4HI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
FokI GGATG 7 cut(s) 526, 677, 1078, 1442, 2057, 2454, 2464
FriOI GRGCYC 1 cut(s) 2508
Fsp4HI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
FspAI RTGCGCAY 1 cut(s) 1464
FspBI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
FspI TGCGCA 1 cut(s) 1464
GlaI GCGC 2 cut(s) 1464, 1605
GluI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
GsuI CTGGAG 3 cut(s) 1362, 1695, 2628
HaeIII GGCC 3 cut(s) 402, 641, 1176
HapII CCGG 3 cut(s) 362, 2540, 2761
HgaI GACGC 2 cut(s) 77, 2077
HhaI GCGC 2 cut(s) 1465, 1606
Hin1I GRCGYC 1 cut(s) 2088
Hin6I GCGC 2 cut(s) 1463, 1604
HinP1I GCGC 2 cut(s) 1463, 1604
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 4 cut(s) 1347, 1641, 1775, 1953
HpaII CCGG 3 cut(s) 362, 2540, 2761
HphI GGTGA 4 cut(s) 787, 1550, 2646, 2759
Hpy166II GTNNAC 5 cut(s) 804, 1103, 1681, 2654, 2707
Hpy8I GTNNAC 5 cut(s) 804, 1103, 1681, 2654, 2707
Hpy99I CGWCG 1 cut(s) 2783
HpyCH4III ACNGT 4 cut(s) 531, 752, 808, 2606
HpyCH4IV ACGT 3 cut(s) 648, 1800, 2364
HpyF10VI GCNNNNNNNGC 8 cut(s) 1109, 1267, 1346, 1601, 1730, 1952, 2215, 2261
HpyF3I CTNAG 9 cut(s) 57, 820, 856, 945, 1317, 1530, 1633, 1684, 1789
HpySE526I ACGT 3 cut(s) 648, 1800, 2364
Hsp92I GRCGYC 1 cut(s) 2088
HspAI GCGC 2 cut(s) 1463, 1604
Ksp22I TGATCA 2 cut(s) 655, 2634
LmnI GCTCC 1 cut(s) 2211
Lsp1109I GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
LweI GCATC 4 cut(s) 348, 504, 697, 931
MaeI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
MaeII ACGT 3 cut(s) 648, 1800, 2364
MaeIII GTNAC 7 cut(s) 376, 1087, 1210, 1285, 1310, 1801, 1996
MflI RGATCY 2 cut(s) 2287, 2752
MhlI GDGCHC 2 cut(s) 1105, 2508
MlyI GAGTC 4 cut(s) 887, 1084, 1417, 1781
MmeI TCCRAC 2 cut(s) 855, 1719
MroXI GAANNNNTTC 3 cut(s) 1059, 1755, 1956
MseI TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
MslI CAYNNNNRTG 7 cut(s) 309, 608, 1520, 1820, 2241, 2513, 2718
MspI CCGG 3 cut(s) 362, 2540, 2761
MspR9I CCNGG 4 cut(s) 1428, 1730, 2097, 2540
Mva1269I GAATGC 3 cut(s) 1300, 1455, 1606
MvaI CCWGG 3 cut(s) 1428, 1730, 2097
MwoI GCNNNNNNNGC 8 cut(s) 1109, 1267, 1346, 1601, 1730, 1952, 2215, 2261
NciI CCSGG 1 cut(s) 2540
NcoI CCATGG 2 cut(s) 244, 1815
NlaIV GGNNCC 3 cut(s) 316, 817, 2600
NmuCI GTSAC 1 cut(s) 1087
NsbI TGCGCA 1 cut(s) 1464
NspI RCATGY 4 cut(s) 1008, 1502, 2229, 2717
PaeI GCATGC 1 cut(s) 1008
PagI TCATGA 3 cut(s) 1359, 1960, 2508
PceI AGGCCT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 3 cut(s) 1300, 1455, 1606
PdmI GAANNNNTTC 3 cut(s) 1059, 1755, 1956
PfeI GAWTC 8 cut(s) 122, 132, 419, 731, 1147, 1487, 2300, 2613
PfoI TCCNGGA 1 cut(s) 2538
PinAI ACCGGT 1 cut(s) 2760
PkrI GCNGC 7 cut(s) 155, 623, 640, 1260, 1813, 2224, 2266
PleI GAGTC 4 cut(s) 886, 1084, 1417, 1781
PpsI GAGTC 4 cut(s) 886, 1084, 1417, 1781
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 2508
Psp6I CCWGG 3 cut(s) 1426, 1728, 2095
PspGI CCWGG 3 cut(s) 1426, 1728, 2095
PspN4I GGNNCC 3 cut(s) 316, 817, 2600
PspPI GGNCC 2 cut(s) 241, 933
PstI CTGCAG 3 cut(s) 706, 2269, 2562
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 2287, 2752
RsaI GTAC 6 cut(s) 5, 102, 505, 1028, 1510, 2060
RsaNI GTAC 6 cut(s) 4, 101, 504, 1027, 1509, 2059
RseI CAYNNNNRTG 7 cut(s) 309, 608, 1520, 1820, 2241, 2513, 2718
SacI GAGCTC 1 cut(s) 2508
SaqAI TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
SatI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
Sau96I GGNCC 2 cut(s) 241, 933
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 4 cut(s) 887, 1084, 1417, 1781
ScrFI CCNGG 4 cut(s) 1428, 1730, 2097, 2540
SduI GDGCHC 2 cut(s) 1105, 2508
SfaNI GCATC 4 cut(s) 348, 504, 697, 931
SfcI CTRYAG 5 cut(s) 492, 588, 702, 2265, 2558
SinI GGWCC 2 cut(s) 241, 933
SmiI ATTTAAAT 1 cut(s) 1545
SmiMI CAYNNNNRTG 7 cut(s) 309, 608, 1520, 1820, 2241, 2513, 2718
SpeI ACTAGT 1 cut(s) 578
SphI GCATGC 1 cut(s) 1008
SseBI AGGCCT 1 cut(s) 1176
SsiI CCGC 8 cut(s) 156, 171, 624, 638, 757, 1836, 2189, 2209
SspI AATATT 1 cut(s) 52
SspMI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
SstI GAGCTC 1 cut(s) 2508
StuI AGGCCT 1 cut(s) 1176
StyD4I CCNGG 4 cut(s) 1426, 1728, 2095, 2538
StyI CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
SwaI ATTTAAAT 1 cut(s) 1545
TaaI ACNGT 4 cut(s) 531, 752, 808, 2606
TaiI ACGT 3 cut(s) 651, 1803, 2367
TaqI TCGA 7 cut(s) 8, 92, 125, 692, 794, 995, 2384
TatI WGTACW 2 cut(s) 3, 503
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 8 cut(s) 122, 132, 419, 731, 1147, 1487, 2300, 2613
Tru1I TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
Tru9I TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
TscAI CASTG 5 cut(s) 755, 847, 1212, 2562, 2611
TseFI GTSAC 1 cut(s) 1087
TseI GCWGC 6 cut(s) 153, 621, 1258, 1811, 2222, 2264
Tsp45I GTSAC 1 cut(s) 1087
TspRI CASTG 5 cut(s) 755, 847, 1212, 2562, 2611
VneI GTGCAC 1 cut(s) 1101
VpaK11BI GGWCC 2 cut(s) 241, 933
XapI RAATTY 8 cut(s) 688, 778, 846, 1127, 1546, 2164, 2444, 2484
XceI RCATGY 4 cut(s) 1008, 1502, 2229, 2717
XmiI GTMKAC 1 cut(s) 2706
XmnI GAANNNNTTC 3 cut(s) 1059, 1755, 1956
XspI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.