Rmu_sc0014484.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014484.1
OG0013464
Physical Location & Seq
Forward (+)
6586 .. 7861
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014484.1_g000002.1.cds

Sequence Viewer

Length: 1276 bp
ctgaagaagcaaaacgcagagctggctagctcctgcagaaaattctcagctctcaggctccaccttccaatcccaaacccaacttcttacctccccatttccacacgcagaacctacctaaacccaaaacccatctccctccaatgcctagaacaaccccaaaaccatggcacccatcccctttcagaccaccccaaccccgaaatctcatgctttcctcaaaagggtttctcccaaatcacccaggaaacctccggcagatccctacacgcattgtgcgtaaagggcattgtgcctctcagagctttctgctcaaacactctggtcaacatgtactcgaaatttggtcgcattgaatatgcacgtttggtgtttgatgatattcctgagagaaatgaagcttcttggaacacgatgatgtcgagctatgtgagagtggggttgtattccgactcggttaggttcttttgtgagatggttggctgcggcgttaggccgagtgggtttgtcattgctagtttggttactgcgtgtgataagtctggttctatgttttgtgaaggaatgcaagttcatggctttgtggtgaaacttgggttgttgtgtgatgtgtttgtgggaacttctgttttgcatttgtatgggacctatggtgttgtttcgaatgctagaaaggtgtttgaggagatgccggagaagaatgtggttacttggacttctttgattgttgggtattctaatggtggagatttgggagaggtaatgagtatatataagcgtatgaggcgtgaaggagtgtgttgcaatgataacactttggctatagtttttagtacttgtggggcgctgggggatgagttattgggtcaacaagttcttggagatgttgtgaaacttggactgcagactagtgtttctgtggcaaattcgctcatatccatgtatggtagctttggtaatgtgggcgaggcgtgctatgtatttgatcatatggatgaaagggacacaatctcatggaattcgattatttctgctaatgtgcaaaatgggttttgtgaagaatcattacggtattttcatcgtatgcggcatgttaataaagaagtgaattctataacagtttcgacgatgttgggagtctgcggttccacagataaactgaagtggggcaggggaattcatggactagtggtgaaactggggatggaatcaaatgtttgtgttggcaatactcttttaagtatgtattctgaggctggaagatctgaagatgttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

425

Amino Acids

46.83

Weight (kDa)

7.58

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 3 cut(s) 486, 1087, 1143
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 6 cut(s) 41, 341, 925, 1018, 1108, 1176
AcuI CTGAAG 2 cut(s) 23, 1181
AfaI GTAC 2 cut(s) 335, 835
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 1 cut(s) 356
AhlI ACTAGT 2 cut(s) 908, 1186
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
AluBI AGCT 7 cut(s) 22, 30, 50, 305, 401, 426, 951
AluI AGCT 7 cut(s) 22, 30, 50, 305, 401, 426, 951
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 6 cut(s) 41, 341, 925, 1018, 1108, 1176
AspLEI GCGC 1 cut(s) 847
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 3 cut(s) 232, 598, 1204
AsuII TTCGAA 1 cut(s) 662
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 1050, 1082
BbvI GCAGC 1 cut(s) 470
BccI CCATC 4 cut(s) 140, 183, 469, 1198
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 985
BcuI ACTAGT 2 cut(s) 908, 1186
BfaI CTAG 6 cut(s) 27, 149, 516, 669, 909, 1187
BfmI CTRYAG 3 cut(s) 34, 822, 902
BfoI RGCGCY 1 cut(s) 848
BglII AGATCT 1 cut(s) 1262
BisI GCNGC 3 cut(s) 484, 487, 1088
BlsI GCNGC 3 cut(s) 485, 488, 1089
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 4 cut(s) 59, 172, 646, 1147
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 1208
BmsI GCATC 1 cut(s) 678
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 1208
Bpu14I TTCGAA 1 cut(s) 662
BsaJI CCNNGG 2 cut(s) 166, 243
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 2 cut(s) 510, 811
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 166, 243
BseGI GGATG 4 cut(s) 175, 859, 1000, 1209
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 2 cut(s) 510, 811
BseMII CTCAG 5 cut(s) 60, 67, 313, 378, 1242
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 847
BshFI GGCC 1 cut(s) 496
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 255, 692
BslFI GGGAC 2 cut(s) 658, 1016
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 658, 1016
BsmI GAATGC 2 cut(s) 570, 670
BsnI GGCC 1 cut(s) 496
Bsp119I TTCGAA 1 cut(s) 662
Bsp143I GATC 3 cut(s) 260, 985, 1262
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 3 cut(s) 486, 1087, 1143
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 5 cut(s) 59, 66, 312, 379, 1243
BspLI GGNNCC 4 cut(s) 59, 172, 646, 1147
BspMAI CTGCAG 2 cut(s) 38, 906
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 510, 811
BsrI ACTGG 1 cut(s) 1203
BssECI CCNNGG 2 cut(s) 166, 243
BssMI GATC 3 cut(s) 260, 985, 1262
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 1071, 1120
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 24, 28, 973
BstDEI CTNAG 5 cut(s) 46, 53, 299, 387, 1251
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 4 cut(s) 175, 859, 1000, 1209
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 3 cut(s) 263, 988, 1265
BstMBI GATC 3 cut(s) 260, 985, 1262
BstMWI GCNNNNNNNGC 4 cut(s) 23, 285, 784, 972
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 334, 1094
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 3 cut(s) 34, 822, 902
BstV1I GCAGC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 260, 1262
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 2 cut(s) 260, 1262
BsuRI GGCC 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 4 cut(s) 175, 859, 1000, 1209
Cac8I GCNNGC 3 cut(s) 24, 28, 973
CfoI GCGC 1 cut(s) 847
Cfr13I GGNCC 1 cut(s) 645
Csp6I GTAC 2 cut(s) 334, 834
CviAII CATG 8 cut(s) 167, 210, 331, 575, 940, 1014, 1091, 1181
CviQI GTAC 2 cut(s) 334, 834
DdeI CTNAG 5 cut(s) 46, 53, 299, 387, 1251
DpnI GATC 3 cut(s) 262, 987, 1264
DpnII GATC 3 cut(s) 260, 985, 1262
Eco130I CCWWGG 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 23, 1181
EcoO109I RGGNCCY 1 cut(s) 645
EcoRI GAATTC 3 cut(s) 1018, 1108, 1176
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 8 cut(s) 170, 213, 334, 578, 943, 1017, 1094, 1184
FaqI GGGAC 2 cut(s) 658, 1016
FatI CATG 8 cut(s) 166, 209, 330, 574, 939, 1013, 1090, 1180
FauNDI CATATG 1 cut(s) 990
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 3 cut(s) 484, 487, 1088
FokI GGATG 4 cut(s) 162, 866, 1007, 1216
Fsp4HI GCNGC 3 cut(s) 484, 487, 1088
FspBI CTAG 6 cut(s) 27, 149, 516, 669, 909, 1187
GlaI GCGC 1 cut(s) 846
GluI GCNGC 3 cut(s) 484, 487, 1088
GsaI CCCAGC 1 cut(s) 851
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 1 cut(s) 496
HapII CCGG 2 cut(s) 255, 692
HhaI GCGC 1 cut(s) 847
Hin1II CATG 8 cut(s) 170, 213, 334, 578, 943, 1017, 1094, 1184
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HincII GTYRAC 2 cut(s) 328, 869
HindII GTYRAC 2 cut(s) 328, 869
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 4 cut(s) 452, 1061, 1137, 1208
HpaII CCGG 2 cut(s) 255, 692
HphI GGTGA 3 cut(s) 232, 598, 1204
Hpy166II GTNNAC 2 cut(s) 328, 869
Hpy188I TCNGA 5 cut(s) 187, 302, 451, 1252, 1267
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 2 cut(s) 328, 869
Hpy99I CGWCG 1 cut(s) 1129
HpyAV CCTTC 3 cut(s) 74, 554, 785
HpyCH4III ACNGT 2 cut(s) 1071, 1120
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 7 cut(s) 36, 362, 568, 634, 804, 904, 1042
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 285, 784, 972
HpyF3I CTNAG 5 cut(s) 46, 53, 299, 387, 1251
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 8 cut(s) 170, 213, 334, 578, 943, 1017, 1094, 1184
HspAI GCGC 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 260, 985, 1262
LmnI GCTCC 2 cut(s) 35, 63
Lsp1109I GCAGC 1 cut(s) 470
LweI GCATC 1 cut(s) 678
MaeI CTAG 6 cut(s) 27, 149, 516, 669, 909, 1187
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 523, 706
MalI GATC 3 cut(s) 262, 987, 1264
MboI GATC 3 cut(s) 260, 985, 1262
MboII GAAGA 4 cut(s) 16, 709, 1070, 1272
MflI RGATCY 2 cut(s) 260, 1262
MluCI AATT 6 cut(s) 41, 341, 925, 1018, 1108, 1176
MlyI GAGTC 2 cut(s) 446, 1146
MmeI TCCRAC 1 cut(s) 474
MseI TTAA 2 cut(s) 1095, 1238
MslI CAYNNNNRTG 4 cut(s) 416, 639, 938, 993
MspI CCGG 2 cut(s) 255, 692
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 2 cut(s) 570, 670
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 23, 285, 784, 972
NcoI CCATGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 990
NdeII GATC 3 cut(s) 260, 985, 1262
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 8 cut(s) 170, 213, 334, 578, 943, 1017, 1094, 1184
NlaIV GGNNCC 4 cut(s) 59, 172, 646, 1147
NmeAIII GCCGAG 1 cut(s) 522
NspI RCATGY 2 cut(s) 334, 1094
NspV TTCGAA 1 cut(s) 662
PciI ACATGT 1 cut(s) 330
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 419
PctI GAATGC 2 cut(s) 570, 670
PfeI GAWTC 2 cut(s) 1061, 1208
PkrI GCNGC 3 cut(s) 485, 488, 1089
PleI GAGTC 2 cut(s) 446, 1145
PpsI GAGTC 2 cut(s) 446, 1145
PpuMI RGGWCCY 1 cut(s) 645
PscI ACATGT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 847
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 4 cut(s) 59, 172, 646, 1147
PspPI GGNCC 1 cut(s) 645
PspPPI RGGWCCY 1 cut(s) 645
PstI CTGCAG 2 cut(s) 38, 906
PsuI RGATCY 2 cut(s) 260, 1262
RsaI GTAC 2 cut(s) 335, 835
RsaNI GTAC 2 cut(s) 334, 834
RseI CAYNNNNRTG 4 cut(s) 416, 639, 938, 993
SaqAI TTAA 2 cut(s) 1095, 1238
SatI GCNGC 3 cut(s) 484, 487, 1088
Sau3AI GATC 3 cut(s) 260, 985, 1262
Sau96I GGNCC 1 cut(s) 645
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 2 cut(s) 446, 1146
ScrFI CCNGG 1 cut(s) 245
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 3 cut(s) 34, 822, 902
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 4 cut(s) 416, 639, 938, 993
SpeI ACTAGT 2 cut(s) 908, 1186
Sse9I AATT 6 cut(s) 41, 341, 925, 1018, 1108, 1176
SsiI CCGC 3 cut(s) 486, 1087, 1143
SspMI CTAG 6 cut(s) 27, 149, 516, 669, 909, 1187
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 1071, 1120
TaiI ACGT 1 cut(s) 367
TaqI TCGA 5 cut(s) 338, 422, 662, 1022, 1124
TasI AATT 6 cut(s) 41, 341, 925, 1018, 1108, 1176
TatI WGTACW 2 cut(s) 333, 833
TauI GCSGC 2 cut(s) 489, 1090
TfiI GAWTC 2 cut(s) 1061, 1208
Tru1I TTAA 2 cut(s) 1095, 1238
Tru9I TTAA 2 cut(s) 1095, 1238
TseI GCWGC 1 cut(s) 483
TspDTI ATGAA 5 cut(s) 411, 563, 1011, 1067, 1169
VpaK11BI GGWCC 1 cut(s) 645
XapI RAATTY 6 cut(s) 41, 341, 925, 1018, 1108, 1176
XceI RCATGY 2 cut(s) 334, 1094
XspI CTAG 6 cut(s) 27, 149, 516, 669, 909, 1187
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.