Rorug05G0087400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013464
Physical Location & Seq
Reverse (-)
7537294 .. 7537863
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0087400.1

Sequence Viewer

Length: 570 bp
ATGGCCGAAGCACTAGTTAACGTTCTCCTAGAGCGTTTGGCTACGATCGCCCTTGACAAGGTCGAACAAGAGCTAGAGCTGGTGGTTGGGGTTAAGAAAGAAGTCAAAAACCTCACCCGCAGTCTGGAATCTATTCAAGCTGTGCTCGAGGATGCTCAGCAGAGACAAGTGATGGGGGCCAGTGTGAAAAGGTGGCTAAATGAACTAAATGATGTTTCCTACGAGATGGATGACGTGCTTGATGAGTGGATCACTACAGTTCTCAAGAGGCAAATGGAGAAACAAGCAAGACAAGGTGCAAATGGTGTTGTTACTACTCAGAAGAAGGTATGCTTGCTATTTCCCTCCTCTTGCTTTTGTTTTGGTCGAGTGAGAAAGTTAAGTCATCGTCGCCACATTGCTGTGAGGATAAAAGACCTAAATGAAAGATTAGCTTTAATCAATAAGGAAAAACAGAGTTTCAACATTCAAAACATCACAAGAGGCCCAGAAGTACTTCCTGAACGACAAAAAACTACTTTTTTTCTGGTGACAAAACATTTGATCGAGCTAAGGAAAAAAGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

189

Amino Acids

21.75

Weight (kDa)

9.54

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 2.2e-23 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 118
AclI AACGTT 1 cut(s) 21
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 58, 124
AgsI TTSAA 3 cut(s) 137, 463, 470
AhlI ACTAGT 1 cut(s) 13
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 5 cut(s) 73, 79, 140, 434, 550
AluI AGCT 5 cut(s) 73, 79, 140, 434, 550
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 3, 177, 484
ApeKI GCWGC 1 cut(s) 563
ArsI GACNNNNNNTTYG 2 cut(s) 523, 555
Asp700I GAANNNNTTC 2 cut(s) 132, 495
AspS9I GGNCC 2 cut(s) 177, 485
AsuHPI GGTGA 2 cut(s) 106, 541
AvaI CYCGRG 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 2 cut(s) 166, 220
BcoDI GTCTC 1 cut(s) 157
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 29, 74
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 564
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 565
BmcAI AGTACT 1 cut(s) 495
BmeT110I CYCGRG 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 177, 485
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 124
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 396
BseGI GGATG 2 cut(s) 157, 235
BseLI CCNNNNNNNGG 2 cut(s) 58, 124
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 170, 332
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 5, 179, 486
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 58, 124
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 3 cut(s) 5, 179, 486
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 45, 249, 543
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 1 cut(s) 118
BspANI GGCC 3 cut(s) 5, 179, 486
BspCNI CTCAG 2 cut(s) 169, 331
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 180
BssMI GATC 3 cut(s) 45, 249, 543
Bst4CI ACNGT 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 3 cut(s) 156, 318, 551
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 157, 235
BstKTI GATC 3 cut(s) 48, 252, 546
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 45, 249, 543
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 255
BsuRI GGCC 3 cut(s) 5, 179, 486
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 157, 235
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 177, 485
Csp6I GTAC 1 cut(s) 494
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 3 cut(s) 156, 318, 551
DpnI GATC 3 cut(s) 47, 251, 545
DpnII GATC 3 cut(s) 45, 249, 543
EaeI YGGCCR 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 146
EcoNI CCTNNNNNAGG 1 cut(s) 56
FaiI YATR 2 cut(s) 331, 568
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 418, 450
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 2 cut(s) 164, 242
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 3 cut(s) 14, 29, 74
GluI GCNGC 1 cut(s) 564
HaeIII GGCC 3 cut(s) 5, 179, 486
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 128
HpaI GTTAAC 1 cut(s) 19
HphI GGTGA 2 cut(s) 106, 541
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 3 cut(s) 125, 265, 500
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 2 cut(s) 21, 234
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 3 cut(s) 156, 318, 551
HpySE526I ACGT 2 cut(s) 21, 234
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 45, 249, 543
LpnPI CCDG 6 cut(s) 65, 110, 193, 501, 512, 513
LweI GCATC 1 cut(s) 142
MaeI CTAG 3 cut(s) 14, 29, 74
MaeII ACGT 2 cut(s) 21, 234
MaeIII GTNAC 2 cut(s) 310, 529
MalI GATC 3 cut(s) 47, 251, 545
MboI GATC 3 cut(s) 45, 249, 543
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 147
MnlI CCTC 7 cut(s) 122, 142, 261, 355, 358, 399, 476
MroXI GAANNNNTTC 2 cut(s) 132, 495
MseI TTAA 4 cut(s) 18, 93, 380, 437
MslI CAYNNNNRTG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 3 cut(s) 45, 249, 543
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 146
PdmI GAANNNNTTC 2 cut(s) 132, 495
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 565
Ple19I CGATCG 1 cut(s) 48
Psp1406I AACGTT 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 177, 485
PspXI VCTCGAGB 1 cut(s) 146
PsyI GACNNNGTC 1 cut(s) 59
PvuI CGATCG 1 cut(s) 48
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 4 cut(s) 18, 93, 380, 437
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 3 cut(s) 45, 249, 543
Sau96I GGNCC 2 cut(s) 177, 485
ScaI AGTACT 1 cut(s) 495
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 146, 263
SmoI CTYRAG 2 cut(s) 146, 263
SpeI ACTAGT 1 cut(s) 13
SsiI CCGC 1 cut(s) 118
SspMI CTAG 3 cut(s) 14, 29, 74
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 2 cut(s) 24, 237
TaqI TCGA 4 cut(s) 63, 147, 367, 546
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 4 cut(s) 18, 93, 380, 437
Tru9I TTAA 4 cut(s) 18, 93, 380, 437
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 216, 438
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 2 cut(s) 132, 495
XspI CTAG 3 cut(s) 14, 29, 74
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.