RLG00000032854

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013464
Physical Location & Seq
Forward (+)
20018112 .. 20020922
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032854

Sequence Viewer

Length: 2811 bp
ATGTACTCGAAATTTGGTCGTATTGAATATGCACGTAAGGTGTTTGATGATATTCCTGAGAGAAATGAAGCTTCTTGGAACACGATGATGTCGAGCTATGTGAGAGTGGGGTTGTATTCTGACTCGGTTAGGTTCTTTTGTGAGATGGTTGGCTGTGGCGTTAGGCCGAGTGGGTTTGTCATTGCTAGTTTGGTTACTGCGTGTGATAAGTCTGGTTCTATGATTTGTGAAGGAATGCAAGTCCATGGCTTTGTGGTGAAACTTGGGTTGTTGTGTGATGTGTTTGTGGGAACTTCTGTTTTGCATTTGTATGGTACGTATGGTGTTGTTTCGAATGCTAGGAAGGTGTTTGAGGAGATGCCGGAGAAGAATGTGGTTACTTGGACTTCTTTGATTGTTGGGTATTCAAATGATGGAGATTTGGGAGAGGTAGTGAGTATTTATAAGCGTATGAGGCGTGAAGGAGTGTGTTGCAATGATAATACTTTTGCTATAGTGTTTAGTACTTGTGGGGCACTGGGGGATGAGTTATTGGGTCAACAAGTTCTTGGAGATGTTGTGAAACTTGGGTTGCAGACTAGTGTTTCTGTGGCTAACTCCCTCATATCCATGTATGGTAGCTTTGGTAATGTGGGTGAGGCGTGCTATGTATTCGATCACATGGATGAAAGGGACACAATCTCGTGGAATTCGATTATTTCTGCTAATGTGCAAAATGGGCTTTGTGAAGAATCATTACGGTATTTTCACCGTATGCGGCATGTTAATAAAGAAGTGAATTCTATAACAGTTTCGACATTGTTGGGAGTCTGCGGTTCCACAGATAAACTGAAGTGGGGCAGGGGAATTCATGGACTAGTGGTGAAACTGGGGATGGAATCAAATGTTTGTGTTGGCAATACTCTTTTAAGTATGTATTCTGAAGCTGGAAGATCTGAAGATGCTGAGTTAGTTTTCAAAAGAATGATAGAGAAGGATATAATCTCATGGAACTCCATGTTAGCATGCTATGTTCAGAATGAGGAGTCCCAAAATGCCCTCAAACATTTTGCTGAAATGCTTCGGACAAGAAAAGCAATAAATTATGTGACTTTAACAAGTGCATTATCTGCCTGTTCAAATCCAGAATTTGTAGTTGAAGGAAAGATTCTTCATGCTCTAGCAGTCATTGCAGGCCTACAAGACAATCTGATAGTCGGAAATGGATTAGTTACCATGTATGGAAAGCTTAGTAAGACGCTTGAAGCAGCAAAGGTGTTGCAAACAATGCCCAAGCGAGATGAAGTTACTTGGAATTCTCTCATTGGTAGTTATGCTGAAAACAAAGAACCTGATGCGGTAATTACAGCTTTTAAACTCAGGAGAAAAGAAGGAACTCCAGCAAACTACATTACAATAATTAATGTTCTTGGTGCTTTCCTGATTCCTAGTGATCTACTAAAACATGGGATGCCCATCCATGCATACATAGTTCTAACAGGATTTGAATCAGAAAAGTATGTGCAGAGTTCCCTTATTACGATGTATGCTAAGTGTGGTGATTTGAACTCAAGTAATTCCATATTTAGTGGACTAACTGTCAAGAGCTCCATTGCATGGAATGCAATCATTGCTGCAAATGCTAACCATGGCCTTGAGGAAGCTTTGAAACTTGCTTTGATGATGAGAAGAGCTGGAGTGGACTTTGATCAGTTCAGCTTATCTATCGCACTTTCTGTTAGTGCAGACCTGGCTATGTTGGTAGAAGGTCAGCAGCTTCATGGCCTGGTAGTTAAGCTTGGTTTTGACACAGACCATTATATTACAAATGCTGCGATGGATATGTATGGAAAATGCGGGGAGATGGAAGATGTTCTGAAGATACTTCCCTCACCAACCATTAGGTCACGATTATCATGGAACATCATGATATCATCGTTTGCCAAACATGGGTGTTTCGAGAAGGCTAGGGAAAGCTTTCATGAAATGGTAAGTCTGGGTGTGAAACCTGACCATGTCACCTTTGTCTCACTTCTCTCTGCGTGCAGTCATGGGGGTCTCGTGGATGATGGTCTTGCATACTATAATGCAATGACTACAGAGTTCGGTGTCCCACCAGCAATAGAACATTGTGTGTGTGTAATTGATCTTCTTGGGCGATCAGGAAGGCTTTCTGAGGCTGAAAACTTTATTAAAGAAATGCCAGTTCCCCCAAATGACCTTGTGTGGCGGAGCTTGTTGGCTGCATGTAAAATTCATCGCAATTTGGAATTAGGGAGGAAAGCAGCAGACCATCTTCTTGAGTTAGATCCATCAGATGATTCAGCTTATGTTCTTTTCTCAAATGTTTGTGCAAGTACTGGAAGATGGGAGGAAGTAGAGAATGTAAGGAGGCAAATGGGATCGAGAAACATAACAAAAAAGCCAGCATGTAGTTGGGTCAAGTTGAAAAGTGAGGTGAGTAAATTCAGGATGGGAGAAAAGTCTCACCCAGAGACACAGCAGATTTATGCCAAGTTGGGAGAGCTTATGAAGAAGATTAGAGAAGCAGGCTATGTTCCTGATACAAGCTACTCCCTGCAAGATACCGATGAAGAACAGAAGGAGCAAAATCTTTGGAACCACAGTGAGAGAATTGCCCTTGCTTTCGGGTTGATCAACACTCCAGAAGGTTCACCCGTTAAGGTTTTCAAGAATCTTCGAGTCTGTGGTGATTGCCATTCCGTGTACAAGCATGTTAGTGCAGTAGTTGGGCGGAAAATCATATTGAGGGATCCATACCGGTTTCACCATTTCAGTGATGGCAAGTGTACTTGTTCTGACTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

937

Amino Acids

103.74

Weight (kDa)

6.32

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 25 - 54 4.9e-06 PPR repeat
PPR_2 PF13041 123 - 170 1.6e-09 PPR repeat family
PPR PF01535 126 - 156 7.7e-07 PPR repeat
PPR_2 PF13041 632 - 676 2.6e-11 PPR repeat family
PPR PF01535 632 - 661 1.4e-07 PPR repeat
E_motif PF20431 746 - 807 5.3e-22 E motif
Eplus_motif PF20430 816 - 840 2.8e-06 E+ motif
DYW_deaminase PF14432 844 - 936 1e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 1596
AciI CCGC 6 cut(s) 757, 813, 1337, 1836, 2209, 2734
AclWI GGATC 4 cut(s) 2282, 2389, 2747, 2760
AcsI RAATTY 8 cut(s) 11, 688, 778, 846, 1127, 1294, 2232, 2444
AcuI CTGAAG 4 cut(s) 851, 942, 957, 1877
AfaI GTAC 6 cut(s) 5, 316, 505, 2338, 2708, 2791
AfiI CCNNNNNNNGG 2 cut(s) 1596, 1929
AgeI ACCGGT 1 cut(s) 2760
AhdI GACNNNNNGTC 1 cut(s) 1577
AhlI ACTAGT 2 cut(s) 578, 856
AjnI CCWGG 2 cut(s) 1728, 1764
Alw21I GWGCWC 1 cut(s) 1589
Alw26I GTCTC 4 cut(s) 2011, 2042, 2468, 2469
AlwI GGATC 4 cut(s) 2282, 2389, 2747, 2760
AoxI GGCC 4 cut(s) 164, 1174, 1630, 1762
ApeKI GCWGC 6 cut(s) 1247, 1613, 1753, 1811, 2222, 2264
ApoI RAATTY 8 cut(s) 11, 688, 778, 846, 1127, 1294, 2232, 2444
AseI ATTAAT 1 cut(s) 1401
AsiGI ACCGGT 1 cut(s) 2760
Asp700I GAANNNNTTC 4 cut(s) 1059, 1851, 1956, 2149
AsuII TTCGAA 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 517
BamHI GGATCC 1 cut(s) 2752
BanII GRGCYC 1 cut(s) 1589
BarI GAAGNNNNNNTAC 4 cut(s) 720, 752, 2112, 2144
BauI CACGAG 2 cut(s) 682, 2039
Bbv12I GWGCWC 1 cut(s) 1589
BbvI GCAGC 6 cut(s) 1259, 1600, 1765, 1798, 2209, 2276
BciT130I CCWGG 2 cut(s) 1730, 1766
BclI TGATCA 2 cut(s) 1687, 2634
BcoDI GTCTC 4 cut(s) 2011, 2042, 2468, 2469
BcuI ACTAGT 2 cut(s) 578, 856
BfaI CTAG 7 cut(s) 186, 339, 579, 857, 1160, 1428, 1947
BfmI CTRYAG 2 cut(s) 492, 2076
BglII AGATCT 1 cut(s) 932
BisI GCNGC 7 cut(s) 758, 1248, 1614, 1754, 1812, 2223, 2265
BlsI GCNGC 7 cut(s) 759, 1249, 1615, 1755, 1813, 2224, 2266
BmcAI AGTACT 2 cut(s) 505, 2338
Bme1390I CCNGG 2 cut(s) 1730, 1766
BmeRI GACNNNNNGTC 1 cut(s) 1577
BmiI GGNNCC 3 cut(s) 817, 2600, 2754
BmrFI CCNGG 2 cut(s) 1730, 1766
BmrI ACTGGG 2 cut(s) 527, 878
BmsI GCATC 4 cut(s) 348, 931, 1324, 1440
BmuI ACTGGG 2 cut(s) 527, 878
BpmI CTGGAG 3 cut(s) 1362, 1695, 2628
Bpu14I TTCGAA 1 cut(s) 332
BpuEI CTTGAG 3 cut(s) 1534, 1655, 2300
BsaAI YACGTR 2 cut(s) 35, 318
BsaBI GATNNNNATC 2 cut(s) 1454, 1486
BsaI GGTCTC 1 cut(s) 2042
BsaJI CCNNGG 2 cut(s) 244, 1627
BsaWI WCCGGW 1 cut(s) 2760
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 543, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 1596, 1929
Bse118I RCCGGY 1 cut(s) 2760
Bse1I ACTGG 4 cut(s) 522, 873, 2183, 2344
Bse3DI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
Bse8I GATNNNNATC 2 cut(s) 1454, 1486
BseBI CCWGG 2 cut(s) 1730, 1766
BseDI CCNNGG 2 cut(s) 244, 1627
BseGI GGATG 7 cut(s) 529, 670, 879, 1455, 1455, 2050, 2457
BseJI GATNNNNATC 2 cut(s) 1454, 1486
BseLI CCNNNNNNNGG 2 cut(s) 1596, 1929
BseMI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
BseMII CTCAG 4 cut(s) 48, 936, 1372, 2145
BseNI ACTGG 4 cut(s) 522, 873, 2183, 2344
BseRI GAGGAG 2 cut(s) 368, 1037
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 6 cut(s) 1259, 1600, 1765, 1798, 2209, 2276
BsgI GTGCAG 4 cut(s) 1523, 1743, 2044, 2742
BshFI GGCC 4 cut(s) 166, 1176, 1632, 1764
BshTI ACCGGT 1 cut(s) 2760
BsiHKAI GWGCWC 1 cut(s) 1589
BsiSI CCGG 2 cut(s) 362, 2761
BslFI GGGAC 3 cut(s) 686, 1012, 2075
BslI CCNNNNNNNGG 2 cut(s) 1596, 1929
BsmAI GTCTC 4 cut(s) 2011, 2042, 2468, 2469
BsmFI GGGAC 3 cut(s) 686, 1012, 2075
BsmI GAATGC 3 cut(s) 240, 340, 1606
BsnI GGCC 4 cut(s) 166, 1176, 1632, 1764
Bso31I GGTCTC 1 cut(s) 2042
Bsp119I TTCGAA 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 517, 1589
Bsp1407I TGTACA 1 cut(s) 2706
Bsp19I CCATGG 2 cut(s) 244, 1627
BspACI CCGC 6 cut(s) 757, 813, 1337, 1836, 2209, 2734
BspANI GGCC 4 cut(s) 166, 1176, 1632, 1764
BspCNI CTCAG 4 cut(s) 49, 937, 1371, 2146
BspHI TCATGA 2 cut(s) 1905, 1960
BspLI GGNNCC 3 cut(s) 817, 2600, 2754
BspPI GGATC 4 cut(s) 2282, 2389, 2747, 2760
BspQI GCTCTTC 1 cut(s) 1663
BspT104I TTCGAA 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 2042
BsrDI GCAATG 6 cut(s) 180, 481, 1167, 1590, 1608, 2076
BsrFI RCCGGY 1 cut(s) 2760
BsrGI TGTACA 1 cut(s) 2706
BsrI ACTGG 4 cut(s) 522, 873, 2183, 2344
BssAI RCCGGY 1 cut(s) 2760
BssECI CCNNGG 2 cut(s) 244, 1627
BssSI CACGAG 2 cut(s) 682, 2039
BssT1I CCWWGG 2 cut(s) 244, 1627
Bst2BI CACGAG 2 cut(s) 682, 2039
Bst2UI CCWGG 2 cut(s) 1730, 1766
Bst4CI ACNGT 5 cut(s) 741, 752, 790, 1579, 2606
Bst6I CTCTTC 1 cut(s) 1663
BstAPI GCANNNNNTGC 5 cut(s) 1109, 1169, 1267, 1601, 1610
BstAUI TGTACA 1 cut(s) 2706
BstBAI YACGTR 2 cut(s) 35, 318
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 6 cut(s) 643, 1006, 1174, 2023, 2406, 2530
BstDEI CTNAG 6 cut(s) 57, 945, 1229, 1358, 1530, 2154
BstDSI CCRYGG 2 cut(s) 244, 1627
BstF5I GGATG 7 cut(s) 529, 670, 879, 1455, 1455, 2050, 2457
BstMAI GTCTC 4 cut(s) 2011, 2042, 2468, 2469
BstMWI GCNNNNNNNGC 9 cut(s) 454, 718, 1109, 1169, 1267, 1601, 1610, 1619, 1730
BstNI CCWGG 2 cut(s) 1730, 1766
BstNSI RCATGY 5 cut(s) 764, 1008, 2229, 2412, 2717
BstSCI CCNGG 2 cut(s) 1728, 1764
BstSFI CTRYAG 2 cut(s) 492, 2076
BstSLI GKGCMC 1 cut(s) 517
BstSNI TACGTA 1 cut(s) 318
BstV1I GCAGC 6 cut(s) 1259, 1600, 1765, 1798, 2209, 2276
BstX2I RGATCY 3 cut(s) 932, 2287, 2752
BstYI RGATCY 3 cut(s) 932, 2287, 2752
BsuRI GGCC 4 cut(s) 166, 1176, 1632, 1764
BtgI CCRYGG 2 cut(s) 244, 1627
BtgZI GCGATG 2 cut(s) 1829, 2222
BtsCI GGATG 7 cut(s) 529, 670, 879, 1455, 1455, 2050, 2457
BtsIMutI CAGTG 3 cut(s) 515, 2611, 2782
Cac8I GCNNGC 6 cut(s) 643, 1006, 1174, 2023, 2406, 2530
CciI TCATGA 2 cut(s) 1905, 1960
Cfr10I RCCGGY 1 cut(s) 2760
CseI GACGC 1 cut(s) 1246
Csp6I GTAC 6 cut(s) 4, 315, 504, 2337, 2707, 2790
CspAI ACCGGT 1 cut(s) 2760
CviQI GTAC 6 cut(s) 4, 315, 504, 2337, 2707, 2790
DdeI CTNAG 6 cut(s) 57, 945, 1229, 1358, 1530, 2154
DraI TTTAAA 1 cut(s) 1354
DriI GACNNNNNGTC 1 cut(s) 1577
Eam1104I CTCTTC 1 cut(s) 1663
Eam1105I GACNNNNNGTC 1 cut(s) 1577
EarI CTCTTC 1 cut(s) 1663
EciI GGCGGA 2 cut(s) 2224, 2749
Ecl136II GAGCTC 1 cut(s) 1587
Eco105I TACGTA 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 244, 1627
Eco147I AGGCCT 1 cut(s) 1176
Eco24I GRGCYC 1 cut(s) 1589
Eco31I GGTCTC 1 cut(s) 2042
Eco32I GATATC 1 cut(s) 1911
Eco53kI GAGCTC 1 cut(s) 1587
Eco57I CTGAAG 4 cut(s) 851, 942, 957, 1877
EcoICRI GAGCTC 1 cut(s) 1587
EcoRI GAATTC 4 cut(s) 688, 778, 846, 1294
EcoRII CCWGG 2 cut(s) 1728, 1764
EcoRV GATATC 1 cut(s) 1911
EcoT14I CCWWGG 2 cut(s) 244, 1627
EcoT22I ATGCAT 1 cut(s) 1465
EcoT38I GRGCYC 1 cut(s) 1589
ErhI CCWWGG 2 cut(s) 244, 1627
FaqI GGGAC 3 cut(s) 686, 1012, 2075
FauI CCCGC 1 cut(s) 1829
FbaI TGATCA 2 cut(s) 1687, 2634
Fnu4HI GCNGC 7 cut(s) 758, 1248, 1614, 1754, 1812, 2223, 2265
FokI GGATG 7 cut(s) 536, 677, 886, 1442, 1462, 2057, 2464
FriOI GRGCYC 1 cut(s) 1589
Fsp4HI GCNGC 7 cut(s) 758, 1248, 1614, 1754, 1812, 2223, 2265
FspBI CTAG 7 cut(s) 186, 339, 579, 857, 1160, 1428, 1947
GluI GCNGC 7 cut(s) 758, 1248, 1614, 1754, 1812, 2223, 2265
GsuI CTGGAG 3 cut(s) 1362, 1695, 2628
HaeIII GGCC 4 cut(s) 166, 1176, 1632, 1764
HapII CCGG 2 cut(s) 362, 2761
HgaI GACGC 1 cut(s) 1246
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HindIII AAGCTT 5 cut(s) 69, 1226, 1641, 1775, 1954
HpaII CCGG 2 cut(s) 362, 2761
Hpy166II GTNNAC 6 cut(s) 539, 1571, 1681, 2654, 2707, 2790
Hpy8I GTNNAC 6 cut(s) 539, 1571, 1681, 2654, 2707, 2790
HpyCH4III ACNGT 5 cut(s) 741, 752, 790, 1579, 2606
HpyCH4IV ACGT 2 cut(s) 34, 317
HpyF10VI GCNNNNNNNGC 9 cut(s) 454, 718, 1109, 1169, 1267, 1601, 1610, 1619, 1730
HpyF3I CTNAG 6 cut(s) 57, 945, 1229, 1358, 1530, 2154
HpySE526I ACGT 2 cut(s) 34, 317
Ksp22I TGATCA 2 cut(s) 1687, 2634
LguI GCTCTTC 1 cut(s) 1663
LmnI GCTCC 3 cut(s) 1592, 2211, 2584
Lsp1109I GCAGC 6 cut(s) 1259, 1600, 1765, 1798, 2209, 2276
LweI GCATC 4 cut(s) 348, 931, 1324, 1440
MaeI CTAG 7 cut(s) 186, 339, 579, 857, 1160, 1428, 1947
MaeII ACGT 2 cut(s) 34, 317
MaeIII GTNAC 7 cut(s) 193, 376, 1087, 1210, 1285, 1884, 1996
MflI RGATCY 3 cut(s) 932, 2287, 2752
MhlI GDGCHC 2 cut(s) 517, 1589
MlyI GAGTC 4 cut(s) 116, 816, 1034, 2691
MmeI TCCRAC 1 cut(s) 1177
Mph1103I ATGCAT 1 cut(s) 1465
MroXI GAANNNNTTC 4 cut(s) 1059, 1851, 1956, 2149
MseI TTAA 8 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172, 2661
MslI CAYNNNNRTG 6 cut(s) 86, 309, 608, 663, 2718, 2775
MspI CCGG 2 cut(s) 362, 2761
MspR9I CCNGG 2 cut(s) 1730, 1766
Mva1269I GAATGC 3 cut(s) 240, 340, 1606
MvaI CCWGG 2 cut(s) 1730, 1766
MwoI GCNNNNNNNGC 9 cut(s) 454, 718, 1109, 1169, 1267, 1601, 1610, 1619, 1730
NcoI CCATGG 2 cut(s) 244, 1627
NlaIV GGNNCC 3 cut(s) 817, 2600, 2754
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 3 cut(s) 1087, 1884, 1996
NsiI ATGCAT 1 cut(s) 1465
NspI RCATGY 5 cut(s) 764, 1008, 2229, 2412, 2717
NspV TTCGAA 1 cut(s) 332
PaeI GCATGC 1 cut(s) 1008
PagI TCATGA 2 cut(s) 1905, 1960
PceI AGGCCT 1 cut(s) 1176
PciSI GCTCTTC 1 cut(s) 1663
PcsI WCGNNNNNNNCGW 2 cut(s) 89, 689
PctI GAATGC 3 cut(s) 240, 340, 1606
PdmI GAANNNNTTC 4 cut(s) 1059, 1851, 1956, 2149
PfeI GAWTC 7 cut(s) 731, 878, 1147, 1423, 1487, 2300, 2674
PflFI GACNNNGTC 1 cut(s) 1994
PflMI CCANNNNNTGG 1 cut(s) 1596
PinAI ACCGGT 1 cut(s) 2760
PkrI GCNGC 7 cut(s) 759, 1249, 1615, 1755, 1813, 2224, 2266
PleI GAGTC 4 cut(s) 116, 815, 1033, 2690
PpsI GAGTC 4 cut(s) 116, 815, 1033, 2690
Ppu21I YACGTR 2 cut(s) 35, 318
PshBI ATTAAT 1 cut(s) 1401
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 1589
Psp6I CCWGG 2 cut(s) 1728, 1764
PspGI CCWGG 2 cut(s) 1728, 1764
PspN4I GGNNCC 3 cut(s) 817, 2600, 2754
PsuI RGATCY 3 cut(s) 932, 2287, 2752
PsyI GACNNNGTC 1 cut(s) 1994
RsaI GTAC 6 cut(s) 5, 316, 505, 2338, 2708, 2791
RsaNI GTAC 6 cut(s) 4, 315, 504, 2337, 2707, 2790
RseI CAYNNNNRTG 6 cut(s) 86, 309, 608, 663, 2718, 2775
SacI GAGCTC 1 cut(s) 1589
SapI GCTCTTC 1 cut(s) 1663
SaqAI TTAA 8 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172, 2661
SatI GCNGC 7 cut(s) 758, 1248, 1614, 1754, 1812, 2223, 2265
ScaI AGTACT 2 cut(s) 505, 2338
SchI GAGTC 4 cut(s) 116, 816, 1034, 2691
ScrFI CCNGG 2 cut(s) 1730, 1766
SduI GDGCHC 2 cut(s) 517, 1589
SfaNI GCATC 4 cut(s) 348, 931, 1324, 1440
SfcI CTRYAG 2 cut(s) 492, 2076
SfuI TTCGAA 1 cut(s) 332
SmiMI CAYNNNNRTG 6 cut(s) 86, 309, 608, 663, 2718, 2775
SmlI CTYRAG 3 cut(s) 1549, 1634, 2279
SmoI CTYRAG 3 cut(s) 1549, 1634, 2279
SnaBI TACGTA 1 cut(s) 318
SpeI ACTAGT 2 cut(s) 578, 856
SphI GCATGC 1 cut(s) 1008
SseBI AGGCCT 1 cut(s) 1176
SsiI CCGC 6 cut(s) 757, 813, 1337, 1836, 2209, 2734
SspMI CTAG 7 cut(s) 186, 339, 579, 857, 1160, 1428, 1947
SstI GAGCTC 1 cut(s) 1589
StuI AGGCCT 1 cut(s) 1176
StyD4I CCNGG 2 cut(s) 1728, 1764
StyI CCWWGG 2 cut(s) 244, 1627
TaaI ACNGT 5 cut(s) 741, 752, 790, 1579, 2606
TaiI ACGT 2 cut(s) 37, 320
TaqI TCGA 9 cut(s) 8, 92, 332, 654, 692, 794, 1938, 2384, 2680
TatI WGTACW 5 cut(s) 3, 503, 2336, 2706, 2789
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 7 cut(s) 731, 878, 1147, 1423, 1487, 2300, 2674
Tru1I TTAA 8 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172, 2661
Tru9I TTAA 8 cut(s) 765, 908, 1094, 1353, 1401, 1773, 2172, 2661
TscAI CASTG 3 cut(s) 522, 2611, 2782
TseFI GTSAC 3 cut(s) 1087, 1884, 1996
TseI GCWGC 6 cut(s) 1247, 1613, 1753, 1811, 2222, 2264
Tsp45I GTSAC 3 cut(s) 1087, 1884, 1996
TspGWI ACGGA 1 cut(s) 2692
TspRI CASTG 3 cut(s) 522, 2611, 2782
Tth111I GACNNNGTC 1 cut(s) 1994
Van91I CCANNNNNTGG 1 cut(s) 1596
VspI ATTAAT 1 cut(s) 1401
XapI RAATTY 8 cut(s) 11, 688, 778, 846, 1127, 1294, 2232, 2444
XceI RCATGY 5 cut(s) 764, 1008, 2229, 2412, 2717
XcmI CCANNNNNNNNNTGG 2 cut(s) 2412, 2777
XmnI GAANNNNTTC 4 cut(s) 1059, 1851, 1956, 2149
XspI CTAG 7 cut(s) 186, 339, 579, 857, 1160, 1428, 1947
ZrmI AGTACT 2 cut(s) 505, 2338
Zsp2I ATGCAT 1 cut(s) 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.