AT1G17147

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014028
Physical Location & Seq
Reverse (-)
5863109 .. 5864059
951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17147.1

Sequence Viewer

Length: 297 bp
ATGTCTGCAGGAGTGAGATCTGAACCGATGAAGGTTGTCTTCATTAACACACAGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAATTGTTCAAGAACTCACAGGTAAAAACGCAGTCGTCGCCGACGGTCCTTATGAATTCTCCGGTCAAGGGTACGGTGGCAAAGATTCATCACAGCGGTTTTGTGGCGTAGGAAAAGAAGCAGAAAGAGGTGTAGAGACGACGGAGTTCGATAGTTTTTTCAGAGAGATGCCTCCGGTCGGCGAATTGTATAATCTTTGGTCAGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

98

Amino Acids

10.89

Weight (kDa)

4.89

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 39 6.3e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 2 cut(s) 56, 158
AfiI CCNNNNNNNGG 2 cut(s) 153, 263
AgsI TTSAA 2 cut(s) 82, 95
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmsI GCATC 2 cut(s) 58, 243
BpiI GAAGAC 1 cut(s) 31
BsaWI WCCGGW 2 cut(s) 146, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 263
BseLI CCNNNNNNNGG 2 cut(s) 153, 263
Bsh1285I CGRYCG 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 2 cut(s) 147, 260
BslI CCNNNNNNNGG 2 cut(s) 153, 263
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 10
BssMI GATC 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 54, 131, 161
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 6
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 55, 157
CviJI RGCY 1 cut(s) 78
CviKI_1 RGCY 1 cut(s) 78
CviQI GTAC 2 cut(s) 55, 157
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 215
FaiI YATR 2 cut(s) 138, 276
FalI AAGNNNNNCTT 2 cut(s) 23, 55
HapII CCGG 2 cut(s) 147, 260
HinfI GANTC 1 cut(s) 170
HpaII CCGG 2 cut(s) 147, 260
Hpy188I TCNGA 5 cut(s) 22, 63, 75, 248, 289
Hpy188III TCNNGA 2 cut(s) 82, 95
Hpy99I CGWCG 3 cut(s) 125, 131, 229
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 54, 131, 161
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 57
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 90, 160, 273
LweI GCATC 2 cut(s) 58, 243
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 17
MluCI AATT 3 cut(s) 87, 140, 269
MnlI CCTC 2 cut(s) 206, 267
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 2 cut(s) 147, 260
MunI CAATTG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 56, 158
RsaNI GTAC 2 cut(s) 55, 157
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 131
SetI ASST 5 cut(s) 36, 60, 80, 109, 217
SfaNI GCATC 2 cut(s) 58, 243
SfcI CTRYAG 1 cut(s) 6
SgeI CNNG 8 cut(s) 21, 84, 94, 107, 117, 159, 164, 272
SinI GGWCC 1 cut(s) 131
Sse9I AATT 3 cut(s) 87, 140, 269
SsiI CCGC 1 cut(s) 181
TaaI ACNGT 3 cut(s) 54, 131, 161
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 234
TasI AATT 3 cut(s) 87, 140, 269
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TspDTI ATGAA 4 cut(s) 31, 44, 153, 162
TspGWI ACGGA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.