pycom10g16860

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014028
Physical Location & Seq
Forward (+)
20072654 .. 20072989
336 bp
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UTR
Exon/CDS
Intron
pycom10g16860.1

Sequence Viewer

Length: 336 bp
ATGTCCAGTGTCGGTAGAAGTCAGTCTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGATGCTATGAGCTTCAAAGATGTCGTGCAAAGGCTAACTGGGAAGGACTCAAGGGTGGCATACGAAGTGCAGGAGCCAGTTACAAAGAGCCCAAAGTACTTTTTGAAAGAGGAAATCAATGGGAGGACTAGTAATAATGTTATGGAATCATCAAATACTTCTACTACTAGTACTATGTCTCGGGATAATTCTTCAGTTTTGATGAGAAATATCTCGTTCAAGGAGTTCGAAAGATTGTTCAGAGAGATGCCTCCAGTAGAGGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

7.97

Isoelectric Point (pI)

61.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 14 - 39 6.2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 56, 164, 238
AgsI TTSAA 3 cut(s) 82, 172, 286
AhlI ACTAGT 2 cut(s) 194, 233
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 56, 249
Ama87I CYCGRG 1 cut(s) 246
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 246
BanII GRGCYC 1 cut(s) 158
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 56, 249
BcuI ACTAGT 2 cut(s) 194, 233
BfaI CTAG 2 cut(s) 195, 234
BmcAI AGTACT 2 cut(s) 164, 238
BmeT110I CYCGRG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 58, 303
BmuI ACTGGG 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bse1I ACTGG 4 cut(s) 6, 109, 143, 320
BseGI GGATG 1 cut(s) 73
BseNI ACTGG 4 cut(s) 6, 109, 143, 320
BsgI GTGCAG 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 246
BsmAI GTCTC 2 cut(s) 56, 249
BsmBI CGTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 294
BsrI ACTGG 4 cut(s) 6, 109, 143, 320
BssMI GATC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 294
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 56, 249
BstMBI GATC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 13
Csp6I GTAC 3 cut(s) 55, 163, 237
CviJI RGCY 4 cut(s) 78, 100, 142, 156
CviKI_1 RGCY 4 cut(s) 78, 100, 142, 156
CviQI GTAC 3 cut(s) 55, 163, 237
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 4 cut(s) 74, 127, 209, 242
FbaI TGATCA 1 cut(s) 39
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 2 cut(s) 195, 234
GsuI CTGGAG 1 cut(s) 303
HinfI GANTC 2 cut(s) 113, 212
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 25, 103
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 94, 136
HpySE526I ACGT 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 19, 90, 122, 156
LweI GCATC 2 cut(s) 58, 303
MaeI CTAG 2 cut(s) 195, 234
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 4 cut(s) 169, 183, 319, 327
NdeII GATC 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 141
NspV TTCGAA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 212
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 141
RsaI GTAC 3 cut(s) 56, 164, 238
RsaNI GTAC 3 cut(s) 55, 163, 237
Sau3AI GATC 1 cut(s) 39
ScaI AGTACT 2 cut(s) 164, 238
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 158
SetI ASST 3 cut(s) 36, 60, 80
SfaNI GCATC 2 cut(s) 58, 303
SfuI TTCGAA 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SpeI ACTAGT 2 cut(s) 194, 233
Sse9I AATT 1 cut(s) 253
SspMI CTAG 2 cut(s) 195, 234
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 253
TatI WGTACW 2 cut(s) 162, 236
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 13
XspI CTAG 2 cut(s) 195, 234
ZrmI AGTACT 2 cut(s) 164, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.