Rh5AG195200

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014028
Physical Location & Seq
Reverse (-)
22657739 .. 22659448
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG195200.1

Sequence Viewer

Length: 381 bp
ATGTCGGGCCAGGGCAGAGGAGATCGGACTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGACGCCGTGAGCTTCAAAGACGTGGTGCAGAACCTGACAGGAAAAGACTCAAGGGTGGCGTATGAAGTGCAGGAGCCGCCGCCGCCGCCGCCGCCTGTTACGAATAACAAGTGTACGTCCCAGTTCAGTAATTTCAGAGATCAAGGACTGATCAATGGAATTAGGTCTTCGATGACGAACAGTAACTCAAATCCTGCTGGATTAATGCCTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAAGAGTTTGATAGATTGTTCAGAGAGATGCCGCCGATGGAGGAGTACTTTTGGGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

7.85

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 1.5e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 59, 184, 365
AgsI TTSAA 2 cut(s) 85, 319
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 1 cut(s) 7
AseI ATTAAT 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 219
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
BlsI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 162, 351
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 2 cut(s) 33, 374
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 4 cut(s) 22, 42, 208, 219
BspACI CCGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 22, 42, 208, 219
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 31, 251
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstKTI GATC 4 cut(s) 25, 45, 211, 222
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 4 cut(s) 22, 42, 208, 219
BstMWI GCNNNNNNNGC 5 cut(s) 145, 151, 154, 157, 160
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 58, 183, 364
CviJI RGCY 4 cut(s) 9, 81, 145, 374
CviKI_1 RGCY 4 cut(s) 9, 81, 145, 374
CviQI GTAC 3 cut(s) 58, 183, 364
DpnI GATC 4 cut(s) 24, 44, 210, 221
DpnII GATC 4 cut(s) 22, 42, 208, 219
EcoRII CCWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 59
FaiI YATR 2 cut(s) 132, 299
FaqI GGGAC 1 cut(s) 172
FbaI TGATCA 2 cut(s) 42, 219
Fnu4HI GCNGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
Fsp4HI GCNGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
GluI GCNGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
HaeIII GGCC 1 cut(s) 9
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 27, 206, 341
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 28, 325
HpyCH4III ACNGT 2 cut(s) 31, 251
HpyCH4IV ACGT 3 cut(s) 60, 90, 185
HpyCH4V TGCA 2 cut(s) 97, 139
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 151, 154, 157, 160
HpySE526I ACGT 3 cut(s) 60, 90, 185
Hsp92I GRCGYC 1 cut(s) 72
Ksp22I TGATCA 2 cut(s) 42, 219
Kzo9I GATC 4 cut(s) 22, 42, 208, 219
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 23, 93, 116, 125, 177, 203, 252, 276
LweI GCATC 1 cut(s) 336
MaeII ACGT 3 cut(s) 60, 90, 185
MaeIII GTNAC 2 cut(s) 166, 251
MalI GATC 4 cut(s) 24, 44, 210, 221
MboI GATC 4 cut(s) 22, 42, 208, 219
MboII GAAGA 1 cut(s) 228
MluCI AATT 3 cut(s) 199, 228, 286
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 11, 288, 297, 352
MseI TTAA 2 cut(s) 272, 379
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 5 cut(s) 145, 151, 154, 157, 160
NdeII GATC 4 cut(s) 22, 42, 208, 219
NlaIV GGNNCC 1 cut(s) 144
PkrI GCNGC 7 cut(s) 147, 150, 153, 156, 159, 162, 351
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 59, 184, 365
RsaNI GTAC 3 cut(s) 58, 183, 364
SaqAI TTAA 2 cut(s) 272, 379
SatI GCNGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
Sau3AI GATC 4 cut(s) 22, 42, 208, 219
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SetI ASST 7 cut(s) 39, 63, 83, 93, 105, 188, 236
SfaNI GCATC 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 3 cut(s) 199, 228, 286
SsiI CCGC 7 cut(s) 146, 149, 152, 155, 158, 161, 350
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 31, 251
TaiI ACGT 3 cut(s) 63, 93, 188
TaqI TCGA 1 cut(s) 239
TasI AATT 3 cut(s) 199, 228, 286
TatI WGTACW 1 cut(s) 363
TauI GCSGC 7 cut(s) 148, 151, 154, 157, 160, 163, 352
Tru1I TTAA 2 cut(s) 272, 379
Tru9I TTAA 2 cut(s) 272, 379
TspDTI ATGAA 2 cut(s) 147, 279
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.