pycom05g19420

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014028
Physical Location & Seq
Forward (+)
22370657 .. 22371016
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19420.1

Sequence Viewer

Length: 360 bp
ATGTCGAGTGTCGGTAGGAATCAGTGTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGATGCCATGAGCTTCAAAGATGTCGTGCAAAGGCTAACTGGGAAGGATTCAAGGGTGGCATACGAAGTGCAGGAGCCGATTACAGAGAGCCCGCAGTACTCTTTGAAAGAGGGAGCCAATATTGGGAGGACGGGTAATAATGTTCTGGAATCATCAAATACTTCTATTGCTAGTACTATGTCTCGGAGTAATTCTTCAGTTTTGATGAGAAATATCTCGTTCAAAGAGTTTGAAAGATTGTTCAGAGAGATGCCTCCAATGGAGGAGTTTTTGGCTGATAAATATATTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

120

Amino Acids

13.47

Weight (kDa)

6.31

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 14 - 39 7e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 3 cut(s) 56, 164, 241
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 5 cut(s) 82, 117, 172, 289, 299
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 56, 252
BanII GRGCYC 1 cut(s) 158
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 56, 252
BfaI CTAG 1 cut(s) 237
BmcAI AGTACT 2 cut(s) 164, 241
BmiI GGNNCC 2 cut(s) 141, 181
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 58, 306
BmuI ACTGGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 56, 252
BsmBI CGTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 141, 181
BsrI ACTGG 1 cut(s) 109
BssMI GATC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 56, 252
BstMBI GATC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 158
Csp6I GTAC 3 cut(s) 55, 163, 240
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 78, 100, 142, 156, 182, 341
CviKI_1 RGCY 6 cut(s) 78, 100, 142, 156, 182, 341
CviQI GTAC 3 cut(s) 55, 163, 240
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 1 cut(s) 76
FaiI YATR 4 cut(s) 74, 127, 245, 351
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 39
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 1 cut(s) 237
Hin1II CATG 1 cut(s) 76
HinfI GANTC 3 cut(s) 19, 113, 215
Hpy188I TCNGA 2 cut(s) 252, 311
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 25, 103
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 94, 136
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 139, 179
LpnPI CCDG 3 cut(s) 90, 122, 197
LweI GCATC 2 cut(s) 58, 306
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 256
MnlI CCTC 4 cut(s) 169, 186, 322, 330
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 141, 181
PfeI GAWTC 3 cut(s) 19, 113, 215
Ppu21I YACGTR 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 141, 181
RsaI GTAC 3 cut(s) 56, 164, 241
RsaNI GTAC 3 cut(s) 55, 163, 240
Sau3AI GATC 1 cut(s) 39
ScaI AGTACT 2 cut(s) 164, 241
SduI GDGCHC 1 cut(s) 158
SetI ASST 3 cut(s) 36, 60, 80
SfaNI GCATC 2 cut(s) 58, 306
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 237
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 256
TatI WGTACW 2 cut(s) 162, 239
TfiI GAWTC 3 cut(s) 19, 113, 215
TscAI CASTG 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 29
XspI CTAG 1 cut(s) 237
ZrmI AGTACT 2 cut(s) 164, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.