Rroxscaffold_1G00051850

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014028
Physical Location & Seq
Forward (+)
72623441 .. 72623815
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051850.1

Sequence Viewer

Length: 375 bp
ATGTCGGGCCAGGGCAGAGGAGACCGGTCTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGACGCCATGAGCTTCAAAGACGTGGTGCAGAAGCTGACCGGAAAAGACTCGAGGGTGGCGTATGAAGTGCAGGAGCCGCCGCCGCCGCCGGTTATGAATAACAAGTGTACGTCCCAGTTCAGTAATTTCAGAGATCAAGGACTGATCAATGGGATTAGGTCTTCGATGACGAACAGTAACTCAAATCCTGCTGGATTAATGCCTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAAGAGTTTGATAGATTGTTCAGAGAGATGCCGCCGATGGAGGAGTTCTTTTGTACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

124

Amino Acids

14.02

Weight (kDa)

8.66

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 1.7e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 146, 149, 152, 155, 344
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 59, 178, 367
AgeI ACCGGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 85, 313
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 81, 103
AluI AGCT 2 cut(s) 81, 103
Alw26I GTCTC 2 cut(s) 15, 59
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 7
AseI ATTAAT 1 cut(s) 266
AsiGI ACCGGT 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 213
BcoDI GTCTC 2 cut(s) 15, 59
BisI GCNGC 5 cut(s) 146, 149, 152, 155, 344
BlsI GCNGC 5 cut(s) 147, 150, 153, 156, 345
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 24, 107
Bse118I RCCGGY 2 cut(s) 24, 157
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 2 cut(s) 33, 368
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 3 cut(s) 25, 108, 158
BslFI GGGAC 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 15, 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 118
Bsp143I GATC 3 cut(s) 42, 202, 213
BspACI CCGC 5 cut(s) 146, 149, 152, 155, 344
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 2 cut(s) 24, 157
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 2 cut(s) 24, 157
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 42, 202, 213
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstKTI GATC 3 cut(s) 45, 205, 216
BstMAI GTCTC 2 cut(s) 15, 59
BstMBI GATC 3 cut(s) 42, 202, 213
BstMWI GCNNNNNNNGC 3 cut(s) 145, 151, 154
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 103
Cfr10I RCCGGY 2 cut(s) 24, 157
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 58, 177, 366
CspAI ACCGGT 1 cut(s) 24
CviAII CATG 1 cut(s) 76
CviJI RGCY 4 cut(s) 9, 81, 103, 145
CviKI_1 RGCY 4 cut(s) 9, 81, 103, 145
CviQI GTAC 3 cut(s) 58, 177, 366
DpnI GATC 3 cut(s) 44, 204, 215
DpnII GATC 3 cut(s) 42, 202, 213
Eco31I GGTCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 77, 132, 164, 293
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 75
FbaI TGATCA 2 cut(s) 42, 213
Fnu4HI GCNGC 5 cut(s) 146, 149, 152, 155, 344
Fsp4HI GCNGC 5 cut(s) 146, 149, 152, 155, 344
GluI GCNGC 5 cut(s) 146, 149, 152, 155, 344
HaeIII GGCC 1 cut(s) 9
HapII CCGG 3 cut(s) 25, 108, 158
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 116
HpaII CCGG 3 cut(s) 25, 108, 158
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 200, 335
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 28, 319
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 3 cut(s) 60, 90, 179
HpyCH4V TGCA 2 cut(s) 97, 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 151, 154
HpySE526I ACGT 3 cut(s) 60, 90, 179
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 79
Ksp22I TGATCA 2 cut(s) 42, 213
Kzo9I GATC 3 cut(s) 42, 202, 213
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 23, 38, 121, 125, 171, 197, 246, 270
LweI GCATC 1 cut(s) 330
MaeII ACGT 3 cut(s) 60, 90, 179
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 44, 204, 215
MboI GATC 3 cut(s) 42, 202, 213
MboII GAAGA 1 cut(s) 222
MluCI AATT 2 cut(s) 193, 280
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 5 cut(s) 11, 114, 282, 291, 346
MseI TTAA 2 cut(s) 266, 373
MspI CCGG 3 cut(s) 25, 108, 158
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 145, 151, 154
NdeII GATC 3 cut(s) 42, 202, 213
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 24
PkrI GCNGC 5 cut(s) 147, 150, 153, 156, 345
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 7
PspXI VCTCGAGB 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 59, 178, 367
RsaNI GTAC 3 cut(s) 58, 177, 366
SaqAI TTAA 2 cut(s) 266, 373
SatI GCNGC 5 cut(s) 146, 149, 152, 155, 344
Sau3AI GATC 3 cut(s) 42, 202, 213
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SetI ASST 7 cut(s) 39, 63, 83, 93, 105, 182, 230
SfaNI GCATC 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 193, 280
SsiI CCGC 5 cut(s) 146, 149, 152, 155, 344
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 3 cut(s) 63, 93, 182
TaqI TCGA 2 cut(s) 119, 233
TasI AATT 2 cut(s) 193, 280
TatI WGTACW 1 cut(s) 365
TauI GCSGC 5 cut(s) 148, 151, 154, 157, 346
Tru1I TTAA 2 cut(s) 266, 373
Tru9I TTAA 2 cut(s) 266, 373
TspDTI ATGAA 3 cut(s) 147, 179, 273
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.