Rw5G017810

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014028
Physical Location & Seq
Reverse (-)
22737973 .. 22738928
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017810.1

Sequence Viewer

Length: 372 bp
ATGTCGGGCCAGGGCAGAGGAGATCGGACTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGACGCCGTGAGCTTCAAAGACGTGGTGCAGAAGCTGACCGGAAAAGACTCAAGGGTGGCGTATGAAGTGCAGGAGCCGCCGCCGCCTGTTACGAATAACAAGTGTACGTCCCAGTTCAGTAATTTCAGAGATCAAGGACTGATCAATGGAATTAGGTCTTCGATGACGAACAGTAACTCAAATCCTGCTGGATTAATGCCTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAAGAGTTTGATAGATTGTTCAGAGAGATGCCGCCGATGGAGGAGTACTTTTGGGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

8.82

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 2.2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 146, 149, 152, 341
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 59, 175, 356
AgsI TTSAA 2 cut(s) 85, 310
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 81, 103
AluI AGCT 2 cut(s) 81, 103
Alw26I GTCTC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 1 cut(s) 7
AseI ATTAAT 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 210
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 4 cut(s) 146, 149, 152, 341
BlsI GCNGC 4 cut(s) 147, 150, 153, 342
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 33, 365
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 4 cut(s) 22, 42, 199, 210
BspACI CCGC 4 cut(s) 146, 149, 152, 341
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 22, 42, 199, 210
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 31, 242
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstKTI GATC 4 cut(s) 25, 45, 202, 213
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 4 cut(s) 22, 42, 199, 210
BstMWI GCNNNNNNNGC 2 cut(s) 145, 151
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 58, 174, 355
CviJI RGCY 5 cut(s) 9, 81, 103, 145, 365
CviKI_1 RGCY 5 cut(s) 9, 81, 103, 145, 365
CviQI GTAC 3 cut(s) 58, 174, 355
DpnI GATC 4 cut(s) 24, 44, 201, 212
DpnII GATC 4 cut(s) 22, 42, 199, 210
EcoRII CCWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 59
FaiI YATR 2 cut(s) 132, 290
FaqI GGGAC 1 cut(s) 163
FbaI TGATCA 2 cut(s) 42, 210
Fnu4HI GCNGC 4 cut(s) 146, 149, 152, 341
Fsp4HI GCNGC 4 cut(s) 146, 149, 152, 341
GluI GCNGC 4 cut(s) 146, 149, 152, 341
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 27, 197, 332
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 28, 316
HpyCH4III ACNGT 2 cut(s) 31, 242
HpyCH4IV ACGT 3 cut(s) 60, 90, 176
HpyCH4V TGCA 2 cut(s) 97, 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 151
HpySE526I ACGT 3 cut(s) 60, 90, 176
Hsp92I GRCGYC 1 cut(s) 72
Ksp22I TGATCA 2 cut(s) 42, 210
Kzo9I GATC 4 cut(s) 22, 42, 199, 210
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 23, 121, 125, 168, 194, 243, 267
LweI GCATC 1 cut(s) 327
MaeII ACGT 3 cut(s) 60, 90, 176
MaeIII GTNAC 2 cut(s) 157, 242
MalI GATC 4 cut(s) 24, 44, 201, 212
MboI GATC 4 cut(s) 22, 42, 199, 210
MboII GAAGA 1 cut(s) 219
MluCI AATT 3 cut(s) 190, 219, 277
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 11, 279, 288, 343
MseI TTAA 2 cut(s) 263, 370
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 145, 151
NdeII GATC 4 cut(s) 22, 42, 199, 210
NlaIV GGNNCC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 147, 150, 153, 342
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 59, 175, 356
RsaNI GTAC 3 cut(s) 58, 174, 355
SaqAI TTAA 2 cut(s) 263, 370
SatI GCNGC 4 cut(s) 146, 149, 152, 341
Sau3AI GATC 4 cut(s) 22, 42, 199, 210
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SetI ASST 7 cut(s) 39, 63, 83, 93, 105, 179, 227
SfaNI GCATC 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 3 cut(s) 190, 219, 277
SsiI CCGC 4 cut(s) 146, 149, 152, 341
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 31, 242
TaiI ACGT 3 cut(s) 63, 93, 179
TaqI TCGA 1 cut(s) 230
TasI AATT 3 cut(s) 190, 219, 277
TatI WGTACW 1 cut(s) 354
TauI GCSGC 4 cut(s) 148, 151, 154, 343
Tru1I TTAA 2 cut(s) 263, 370
Tru9I TTAA 2 cut(s) 263, 370
TspDTI ATGAA 2 cut(s) 147, 270
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.