Rmu_sc0000920.1_g000001

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000920.1
OG0014028
Physical Location & Seq
Reverse (-)
833 .. 1207
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000920.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atgtcgggccagggcagaggagaccggactgtgaaggttgtgatcatcaacaccaagtacgtggagacggacgccatgagcttcaaagacgtggtgcagaagctgaccggaaaagactcaagggtggcgtatgaagtgcaggagccgccgccgccgccgccggttaataacaagtgttcgtcccagttcagtaatttcagagatcaaggactgatcaatgggattaggtcttcgatgacgaacagtaactcaaatcctgctggattaatgcctcgcagtaattcatcagttatgatgaggaacatctccttcaaagagtttgatagattgttcagagagatgccgccgatggaggagtacttttgggctgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

124

Amino Acids

14.06

Weight (kDa)

8.82

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 146, 149, 152, 155, 158, 344
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 59, 359
AgsI TTSAA 2 cut(s) 85, 313
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 81, 103
AluI AGCT 2 cut(s) 81, 103
Alw26I GTCTC 2 cut(s) 15, 59
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 1 cut(s) 7
AseI ATTAAT 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 213
BcoDI GTCTC 2 cut(s) 15, 59
BisI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 344
BlsI GCNGC 6 cut(s) 147, 150, 153, 156, 159, 345
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 24, 107
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 2 cut(s) 33, 368
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 3 cut(s) 25, 108, 161
BslFI GGGAC 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 15, 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 3 cut(s) 42, 202, 213
BspACI CCGC 6 cut(s) 146, 149, 152, 155, 158, 344
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 42, 202, 213
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 31, 245
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstKTI GATC 3 cut(s) 45, 205, 216
BstMAI GTCTC 2 cut(s) 15, 59
BstMBI GATC 3 cut(s) 42, 202, 213
BstMWI GCNNNNNNNGC 4 cut(s) 145, 151, 154, 157
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 58, 358
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 9, 81, 103, 145, 368
CviKI_1 RGCY 5 cut(s) 9, 81, 103, 145, 368
CviQI GTAC 2 cut(s) 58, 358
DpnI GATC 3 cut(s) 44, 204, 215
DpnII GATC 3 cut(s) 42, 202, 213
Eco31I GGTCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 77, 132, 293
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 75
FbaI TGATCA 2 cut(s) 42, 213
Fnu4HI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 344
Fsp4HI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 344
GluI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 344
HaeIII GGCC 1 cut(s) 9
HapII CCGG 3 cut(s) 25, 108, 161
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 116
HpaII CCGG 3 cut(s) 25, 108, 161
Hpy188I TCNGA 2 cut(s) 200, 335
HpyAV CCTTC 2 cut(s) 28, 319
HpyCH4III ACNGT 2 cut(s) 31, 245
HpyCH4IV ACGT 2 cut(s) 60, 90
HpyCH4V TGCA 2 cut(s) 97, 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 151, 154, 157
HpySE526I ACGT 2 cut(s) 60, 90
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 79
Ksp22I TGATCA 2 cut(s) 42, 213
Kzo9I GATC 3 cut(s) 42, 202, 213
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 23, 38, 121, 125, 174, 197, 246, 270
LweI GCATC 1 cut(s) 330
MaeII ACGT 2 cut(s) 60, 90
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 44, 204, 215
MboI GATC 3 cut(s) 42, 202, 213
MboII GAAGA 1 cut(s) 222
MluCI AATT 2 cut(s) 193, 280
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 11, 282, 291, 346
MseI TTAA 3 cut(s) 165, 266, 373
MspI CCGG 3 cut(s) 25, 108, 161
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 145, 151, 154, 157
NdeII GATC 3 cut(s) 42, 202, 213
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 144
PkrI GCNGC 6 cut(s) 147, 150, 153, 156, 159, 345
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 2 cut(s) 59, 359
RsaNI GTAC 2 cut(s) 58, 358
SaqAI TTAA 3 cut(s) 165, 266, 373
SatI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 344
Sau3AI GATC 3 cut(s) 42, 202, 213
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SetI ASST 6 cut(s) 39, 63, 83, 93, 105, 230
SfaNI GCATC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 193, 280
SsiI CCGC 6 cut(s) 146, 149, 152, 155, 158, 344
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 31, 245
TaiI ACGT 2 cut(s) 63, 93
TaqI TCGA 1 cut(s) 233
TasI AATT 2 cut(s) 193, 280
TatI WGTACW 1 cut(s) 357
TauI GCSGC 6 cut(s) 148, 151, 154, 157, 160, 346
Tru1I TTAA 3 cut(s) 165, 266, 373
Tru9I TTAA 3 cut(s) 165, 266, 373
TspDTI ATGAA 2 cut(s) 147, 273
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.