Rh5DG195400

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014028
Physical Location & Seq
Reverse (-)
21674358 .. 21676100
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG195400.1

Sequence Viewer

Length: 378 bp
ATGTCGGGCCAGGGCAGAGGAGACCGGACTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGACGCCATGAGTTTCAAAGACGTGGTGCAGAAGCTGACCGGAAAAGACTCAAGGGTGGCGTATGAAGTGCAGGAGCCGCCGCCGCCGCCGCCGGTTACGAATAACAAGTGTACGTCCCAGTTCAGTAATTTCAGAGATCAACGACTGATCAATGGGATTAGGTCTTCGATGACGAACAGTAACTCAAATCCTGCTGGATTAATGCCTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAAGAGTTTGATAGATTGTTCAGAGAGATGCCGCCGATGGAGGAGTACTTTTGGGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

125

Amino Acids

14.27

Weight (kDa)

9.2

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 1.7e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 146, 149, 152, 155, 158, 347
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 59, 181, 362
AgsI TTSAA 2 cut(s) 85, 316
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 2 cut(s) 15, 59
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 1 cut(s) 7
AseI ATTAAT 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 225
BccI CCATC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 216
BcoDI GTCTC 2 cut(s) 15, 59
BisI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 347
BlsI GCNGC 6 cut(s) 147, 150, 153, 156, 159, 348
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 24, 107
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 2 cut(s) 33, 371
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 3 cut(s) 25, 108, 161
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 15, 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 3 cut(s) 42, 205, 216
BspACI CCGC 6 cut(s) 146, 149, 152, 155, 158, 347
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 42, 205, 216
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 31, 248
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstKTI GATC 3 cut(s) 45, 208, 219
BstMAI GTCTC 2 cut(s) 15, 59
BstMBI GATC 3 cut(s) 42, 205, 216
BstMWI GCNNNNNNNGC 4 cut(s) 145, 151, 154, 157
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 58, 180, 361
CviAII CATG 1 cut(s) 76
CviJI RGCY 4 cut(s) 9, 103, 145, 371
CviKI_1 RGCY 4 cut(s) 9, 103, 145, 371
CviQI GTAC 3 cut(s) 58, 180, 361
DpnI GATC 3 cut(s) 44, 207, 218
DpnII GATC 3 cut(s) 42, 205, 216
Eco31I GGTCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 77, 132, 296
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 75
FbaI TGATCA 2 cut(s) 42, 216
Fnu4HI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 347
Fsp4HI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 347
GluI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 347
HaeIII GGCC 1 cut(s) 9
HapII CCGG 3 cut(s) 25, 108, 161
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 116
HpaII CCGG 3 cut(s) 25, 108, 161
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 203, 338
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 2 cut(s) 28, 322
HpyCH4III ACNGT 2 cut(s) 31, 248
HpyCH4IV ACGT 3 cut(s) 60, 90, 182
HpyCH4V TGCA 2 cut(s) 97, 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 151, 154, 157
HpySE526I ACGT 3 cut(s) 60, 90, 182
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 79
Ksp22I TGATCA 2 cut(s) 42, 216
Kzo9I GATC 3 cut(s) 42, 205, 216
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 8 cut(s) 23, 38, 121, 125, 174, 200, 249, 273
LweI GCATC 1 cut(s) 333
MaeII ACGT 3 cut(s) 60, 90, 182
MaeIII GTNAC 2 cut(s) 163, 248
MalI GATC 3 cut(s) 44, 207, 218
MboI GATC 3 cut(s) 42, 205, 216
MboII GAAGA 1 cut(s) 225
MluCI AATT 2 cut(s) 196, 283
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 11, 285, 294, 349
MseI TTAA 2 cut(s) 269, 376
MspI CCGG 3 cut(s) 25, 108, 161
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 145, 151, 154, 157
NdeII GATC 3 cut(s) 42, 205, 216
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 144
PkrI GCNGC 6 cut(s) 147, 150, 153, 156, 159, 348
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 59, 181, 362
RsaNI GTAC 3 cut(s) 58, 180, 361
SaqAI TTAA 2 cut(s) 269, 376
SatI GCNGC 6 cut(s) 146, 149, 152, 155, 158, 347
Sau3AI GATC 3 cut(s) 42, 205, 216
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SetI ASST 6 cut(s) 39, 63, 93, 105, 185, 233
SfaNI GCATC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 196, 283
SsiI CCGC 6 cut(s) 146, 149, 152, 155, 158, 347
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 31, 248
TaiI ACGT 3 cut(s) 63, 93, 185
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 196, 283
TatI WGTACW 1 cut(s) 360
TauI GCSGC 6 cut(s) 148, 151, 154, 157, 160, 349
Tru1I TTAA 2 cut(s) 269, 376
Tru9I TTAA 2 cut(s) 269, 376
TspDTI ATGAA 2 cut(s) 147, 276
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.