FvH4_3g16620

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014028
Physical Location & Seq
Reverse (-)
10474252 .. 10479279
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16620.t1

Sequence Viewer

Length: 528 bp
ATGTCGGGCCAGGGAAGAGGAGAACGGACTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACAGACGCCATGAGCTTCAAAGACGTGGTGCAGAAGATGACCGGAAAAGACTCGAGGGTGGCGTATGAAGTGCAGGAGCCACCGCCGGCGGCGGTTCCGAGTAACAAGAGCACCTCCCAGTTTAGTAACTTCAAAGACCAAGGACTGATCAATGGGATTAAGTCTTCGATGACGAATAGTAACTCAAATCCTGCAGGATCAATGCGTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAGGAGTTTGAGAGGGGAAGTGTATGGCTGGTCCATCGTTATCCATTCCCATCATTGGCAACAAAAACAGAGAGATTCTTTCTCCCCTCAACTCCTCTTCATCTGCTTTTCACACCAATTCAAGGTCTGCCTTTTGCGCTCTTCTGGGTTCTCTCTCAAATTTCTCAGCTCAAAACCGCAAGCAAAAAAGAGGTTGCGAGGATGTTTTCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

10.2

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 1.8e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 149, 155, 158, 489
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 367, 434
AgsI TTSAA 4 cut(s) 85, 199, 313, 434
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 81, 481
AluI AGCT 2 cut(s) 81, 481
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 471
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 2 cut(s) 7, 343
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 2 cut(s) 354, 370
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 213
BcoDI GTCTC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 7, 343
BmiI GGNNCC 2 cut(s) 144, 162
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 10, 205
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 434
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 10, 205
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 367, 434
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 2 cut(s) 33, 396
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 108, 152
BslI CCNNNNNNNGG 2 cut(s) 367, 434
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 42, 213, 263
BspACI CCGC 4 cut(s) 149, 155, 158, 489
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 144, 162
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 458
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 10, 205
BssMI GATC 3 cut(s) 42, 213, 263
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 3 cut(s) 10, 414, 458
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 153, 493
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 519
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 45, 216, 266
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 42, 213, 263
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 153, 493
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 7, 343
CseI GACGC 2 cut(s) 80, 260
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 9, 81, 145, 340, 481
CviKI_1 RGCY 5 cut(s) 9, 81, 145, 340, 481
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 477
DpnI GATC 3 cut(s) 44, 215, 265
DpnII GATC 3 cut(s) 42, 213, 263
Eam1104I CTCTTC 3 cut(s) 10, 414, 458
EarI CTCTTC 3 cut(s) 10, 414, 458
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 77, 132, 293, 337
FatI CATG 1 cut(s) 75
FbaI TGATCA 2 cut(s) 42, 213
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 9
HapII CCGG 2 cut(s) 108, 152
HgaI GACGC 2 cut(s) 80, 260
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 2 cut(s) 116, 387
HpaII CCGG 2 cut(s) 108, 152
Hpy188I TCNGA 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 28, 319
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 2 cut(s) 60, 90
HpyCH4V TGCA 3 cut(s) 97, 139, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 2 cut(s) 60, 90
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 449
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Ksp22I TGATCA 2 cut(s) 42, 213
Kzo9I GATC 3 cut(s) 42, 213, 263
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 9 cut(s) 23, 121, 125, 165, 197, 246, 270, 326, 442
MaeII ACGT 2 cut(s) 60, 90
MaeIII GTNAC 3 cut(s) 167, 191, 245
MalI GATC 3 cut(s) 44, 215, 265
MboI GATC 3 cut(s) 42, 213, 263
MboII GAAGA 5 cut(s) 27, 112, 222, 401, 445
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 280, 429, 471
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 9 cut(s) 11, 114, 190, 291, 318, 409, 417, 496, 504
MreI CGCCGGCG 1 cut(s) 151
MroNI GCCGGC 1 cut(s) 151
MseI TTAA 1 cut(s) 225
MspI CCGG 2 cut(s) 108, 152
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 448
NaeI GCCGGC 1 cut(s) 153
NdeII GATC 3 cut(s) 42, 213, 263
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 144, 162
PaeR7I CTCGAG 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 387
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 144, 162
PspPI GGNCC 2 cut(s) 7, 343
PspXI VCTCGAGB 1 cut(s) 118
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 3 cut(s) 42, 213, 263
Sau96I GGNCC 2 cut(s) 7, 343
SbfI CCTGCAGG 1 cut(s) 262
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SdaI CCTGCAGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 179
SetI ASST 8 cut(s) 39, 63, 83, 93, 182, 439, 483, 507
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 118
SgrAI CRCCGGYG 1 cut(s) 151
SinI GGWCC 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse8387I CCTGCAGG 1 cut(s) 262
Sse9I AATT 3 cut(s) 280, 429, 471
SsiI CCGC 4 cut(s) 149, 155, 158, 489
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 2 cut(s) 63, 93
TaqI TCGA 2 cut(s) 119, 233
TasI AATT 3 cut(s) 280, 429, 471
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 147, 273, 401
TspGWI ACGGA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.