VQ motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17147 AT1G78410 AT1G78410 |
| fragaria_vesca | FvH4_3g16620 |
| prunus_persica | Prupe.4G149000_v2.0.a1 |
| pyrus_communis | pycom05g19420 pycom10g16860 |
| rosa_chinensis | RchiOBHm_Chr5g0027761 |
| rosa_laevigata | RLG00000033041 |
| rosa_multiflora | Rmu_sc0000920.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00051850 |
| rosa_rugosa | Rorug05G0101000 |
| rosa_samantha | Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400 |
| rosa_wichuraiana | Rw5G017810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 122, 280 |
| AciI | CCGC | 2 cut(s) | 252, 264 |
| AclWI | GGATC | 1 cut(s) | 197 |
| AcuI | CTGAAG | 1 cut(s) | 282 |
| AcyI | GRCGYC | 1 cut(s) | 72 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 364 |
| AgsI | TTSAA | 3 cut(s) | 85, 325, 335 |
| AluBI | AGCT | 2 cut(s) | 81, 103 |
| AluI | AGCT | 2 cut(s) | 81, 103 |
| Alw26I | GTCTC | 2 cut(s) | 59, 288 |
| AlwI | GGATC | 1 cut(s) | 197 |
| BauI | CACGAG | 1 cut(s) | 76 |
| BclI | TGATCA | 1 cut(s) | 42 |
| BcoDI | GTCTC | 2 cut(s) | 59, 288 |
| BmiI | GGNNCC | 2 cut(s) | 27, 144 |
| BmrI | ACTGGG | 2 cut(s) | 117, 353 |
| BmsI | GCATC | 1 cut(s) | 342 |
| BmuI | ACTGGG | 2 cut(s) | 117, 353 |
| BpuEI | CTTGAG | 1 cut(s) | 196 |
| BsaHI | GRCGYC | 1 cut(s) | 72 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 364 |
| Bse1I | ACTGG | 4 cut(s) | 112, 166, 250, 359 |
| BseGI | GGATG | 1 cut(s) | 213 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 364 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseNI | ACTGG | 4 cut(s) | 112, 166, 250, 359 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 364 |
| BsmAI | GTCTC | 2 cut(s) | 59, 288 |
| Bsp143I | GATC | 3 cut(s) | 42, 181, 189 |
| BspACI | CCGC | 2 cut(s) | 252, 264 |
| BspCNI | CTCAG | 1 cut(s) | 131 |
| BspLI | GGNNCC | 2 cut(s) | 27, 144 |
| BspPI | GGATC | 1 cut(s) | 197 |
| BsrI | ACTGG | 4 cut(s) | 112, 166, 250, 359 |
| BssMI | GATC | 3 cut(s) | 42, 181, 189 |
| BssNI | GRCGYC | 1 cut(s) | 72 |
| BssSI | CACGAG | 1 cut(s) | 76 |
| Bst2BI | CACGAG | 1 cut(s) | 76 |
| BstACI | GRCGYC | 1 cut(s) | 72 |
| BstDEI | CTNAG | 1 cut(s) | 118 |
| BstF5I | GGATG | 1 cut(s) | 213 |
| BstKTI | GATC | 3 cut(s) | 45, 184, 192 |
| BstMAI | GTCTC | 2 cut(s) | 59, 288 |
| BstMBI | GATC | 3 cut(s) | 42, 181, 189 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 61 |
| BtsCI | GGATG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 3 cut(s) | 173, 243, 366 |
| CseI | GACGC | 1 cut(s) | 80 |
| CviJI | RGCY | 4 cut(s) | 81, 103, 145, 165 |
| CviKI_1 | RGCY | 4 cut(s) | 81, 103, 145, 165 |
| DdeI | CTNAG | 1 cut(s) | 118 |
| DpnI | GATC | 3 cut(s) | 44, 183, 191 |
| DpnII | GATC | 3 cut(s) | 42, 181, 189 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 122, 280 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 122, 280 |
| EciI | GGCGGA | 1 cut(s) | 279 |
| Eco57I | CTGAAG | 1 cut(s) | 282 |
| FaiI | YATR | 6 cut(s) | 60, 130, 132, 201, 227, 317 |
| FauNDI | CATATG | 1 cut(s) | 130 |
| FbaI | TGATCA | 1 cut(s) | 42 |
| FokI | GGATG | 1 cut(s) | 220 |
| HgaI | GACGC | 1 cut(s) | 80 |
| Hin1I | GRCGYC | 1 cut(s) | 72 |
| HinfI | GANTC | 2 cut(s) | 116, 230 |
| Hpy188I | TCNGA | 3 cut(s) | 121, 288, 347 |
| Hpy188III | TCNNGA | 1 cut(s) | 175 |
| HpyCH4V | TGCA | 3 cut(s) | 97, 139, 158 |
| HpyF3I | CTNAG | 1 cut(s) | 118 |
| Hsp92I | GRCGYC | 1 cut(s) | 72 |
| Ksp22I | TGATCA | 1 cut(s) | 42 |
| Kzo9I | GATC | 3 cut(s) | 42, 181, 189 |
| LmnI | GCTCC | 1 cut(s) | 142 |
| LpnPI | CCDG | 6 cut(s) | 93, 125, 170, 179, 231, 372 |
| LweI | GCATC | 1 cut(s) | 342 |
| MalI | GATC | 3 cut(s) | 44, 183, 191 |
| MboI | GATC | 3 cut(s) | 42, 181, 189 |
| MboII | GAAGA | 4 cut(s) | 3, 6, 9, 288 |
| MluCI | AATT | 2 cut(s) | 196, 292 |
| MlyI | GAGTC | 1 cut(s) | 110 |
| MnlI | CCTC | 2 cut(s) | 115, 358 |
| MseI | TTAA | 2 cut(s) | 219, 258 |
| NdeI | CATATG | 1 cut(s) | 130 |
| NdeII | GATC | 3 cut(s) | 42, 181, 189 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 144 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PleI | GAGTC | 1 cut(s) | 110 |
| PpsI | GAGTC | 1 cut(s) | 110 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 144 |
| SaqAI | TTAA | 2 cut(s) | 219, 258 |
| Sau3AI | GATC | 3 cut(s) | 42, 181, 189 |
| SchI | GAGTC | 1 cut(s) | 110 |
| SetI | ASST | 3 cut(s) | 83, 105, 126 |
| SfaNI | GCATC | 1 cut(s) | 342 |
| SmlI | CTYRAG | 1 cut(s) | 175 |
| SmoI | CTYRAG | 1 cut(s) | 175 |
| Sse9I | AATT | 2 cut(s) | 196, 292 |
| SsiI | CCGC | 2 cut(s) | 252, 264 |
| TasI | AATT | 2 cut(s) | 196, 292 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| Tru1I | TTAA | 2 cut(s) | 219, 258 |
| Tru9I | TTAA | 2 cut(s) | 219, 258 |
| TscAI | CASTG | 3 cut(s) | 173, 250, 366 |
| TspDTI | ATGAA | 2 cut(s) | 147, 323 |
| TspRI | CASTG | 3 cut(s) | 173, 250, 366 |