RLG00000033041

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014028
Physical Location & Seq
Reverse (-)
22490399 .. 22491102
704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033041

Sequence Viewer

Length: 540 bp
ATGTCGGGCCAGGGCAGAGAAGACCGGTCTGTGAAGGTTGTGATCATCAACACCAAGTACGTGGAGACGGACGCCATGAGCTTCAAAGACGTAGTGCAGAAGCTGACCGGAAAAGACTCGAGGGTGGCGTATGAAGTGCAGGAGCCGCCGCCGCCGGTTACGAATAACAAGTGTACGTCCCAGTTCAGTAATTTCAGAGATCAAGGACTGATCAATGGGATTAGGTCTTCGATGACGAACAGTAACTCAAATCCTGCTGGATTAATGCCTCGCAGTAATTCATCAGTTATGATGAGGAACATCTCCTTCAAAGAGTTTGATAGATTGTTCAGAGAGATGCCGCCAATGGAGGAGGAAATGTCTATGGCTGGTCCATCGTCATCCATTCCCATCATTGTCTGCAAGCTAGTTCAAGACTTCCAAGTAAAGGAACCCAAAACCCAAGCTAACCCAAGCTTGGGGCAACGGTTCCAAGCGCCATATGCTCATAAATATCCGACACTGACCATGGTCAAGAGCCTCAAAAACCCTAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

180

Amino Acids

20.1

Weight (kDa)

9.51

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 3e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 146, 149, 152, 341
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 59, 175
AfiI CCNNNNNNNGG 3 cut(s) 427, 457, 458
AgeI ACCGGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 85, 310, 413
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 5 cut(s) 81, 103, 406, 446, 456
AluI AGCT 5 cut(s) 81, 103, 406, 446, 456
Alw26I GTCTC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 7
AseI ATTAAT 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 24
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 7, 371
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 27, 219
BccI CCATC 2 cut(s) 382, 398
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 2 cut(s) 42, 210
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 479
BisI GCNGC 4 cut(s) 146, 149, 152, 341
BlsI GCNGC 4 cut(s) 147, 150, 153, 342
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 7, 371
BmiI GGNNCC 3 cut(s) 144, 432, 470
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 509
BpiI GAAGAC 2 cut(s) 27, 219
Bpu10I CCTNAGC 1 cut(s) 531
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 10, 507
BsaWI WCCGGW 2 cut(s) 24, 107
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 427, 457, 458
Bse118I RCCGGY 2 cut(s) 24, 154
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 10, 507
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 3 cut(s) 427, 457, 458
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 365
BsgI GTGCAG 2 cut(s) 116, 158
BshFI GGCC 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 3 cut(s) 25, 108, 155
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 427, 457, 458
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 118
Bsp143I GATC 3 cut(s) 42, 199, 210
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 4 cut(s) 146, 149, 152, 341
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 144, 432, 470
BsrFI RCCGGY 2 cut(s) 24, 154
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 2 cut(s) 24, 154
BssECI CCNNGG 2 cut(s) 10, 507
BssMI GATC 3 cut(s) 42, 199, 210
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 242, 468
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 380
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 3 cut(s) 45, 202, 213
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 42, 199, 210
BstMWI GCNNNNNNNGC 3 cut(s) 145, 151, 482
BstNI CCWGG 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 9
BstV2I GAAGAC 2 cut(s) 27, 219
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 500
Cac8I GCNNGC 1 cut(s) 404
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 2 cut(s) 24, 154
Cfr13I GGNCC 2 cut(s) 7, 371
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 58, 174
CspAI ACCGGT 1 cut(s) 24
CviAII CATG 3 cut(s) 76, 508, 537
CviQI GTAC 2 cut(s) 58, 174
DdeI CTNAG 1 cut(s) 531
DpnI GATC 3 cut(s) 44, 201, 212
DpnII GATC 3 cut(s) 42, 199, 210
Eco130I CCWWGG 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 3 cut(s) 79, 511, 540
FaiI YATR 9 cut(s) 77, 132, 290, 365, 481, 483, 489, 509, 538
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 75, 507, 536
FauNDI CATATG 1 cut(s) 481
FbaI TGATCA 2 cut(s) 42, 210
Fnu4HI GCNGC 4 cut(s) 146, 149, 152, 341
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 4 cut(s) 146, 149, 152, 341
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 477
GluI GCNGC 4 cut(s) 146, 149, 152, 341
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 1 cut(s) 9
HapII CCGG 3 cut(s) 25, 108, 155
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 79, 511, 540
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 1 cut(s) 116
HpaII CCGG 3 cut(s) 25, 108, 155
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 197, 332, 498
Hpy188III TCNNGA 2 cut(s) 413, 514
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 28, 316
HpyCH4III ACNGT 2 cut(s) 242, 468
HpyCH4IV ACGT 3 cut(s) 60, 90, 176
HpyCH4V TGCA 3 cut(s) 97, 139, 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 151, 482
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 3 cut(s) 60, 90, 176
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 79, 511, 540
HspAI GCGC 1 cut(s) 476
Ksp22I TGATCA 2 cut(s) 42, 210
Kzo9I GATC 3 cut(s) 42, 199, 210
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 9 cut(s) 23, 38, 121, 125, 168, 194, 243, 267, 354
LweI GCATC 1 cut(s) 327
MaeI CTAG 1 cut(s) 407
MaeII ACGT 3 cut(s) 60, 90, 176
MaeIII GTNAC 2 cut(s) 157, 242
MalI GATC 3 cut(s) 44, 201, 212
MboI GATC 3 cut(s) 42, 199, 210
MboII GAAGA 2 cut(s) 32, 219
MluCI AATT 2 cut(s) 190, 277
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 6 cut(s) 114, 279, 288, 343, 346, 530
MseI TTAA 1 cut(s) 263
MspI CCGG 3 cut(s) 25, 108, 155
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 145, 151, 482
NcoI CCATGG 1 cut(s) 507
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 42, 199, 210
NlaIII CATG 3 cut(s) 79, 511, 540
NlaIV GGNNCC 3 cut(s) 144, 432, 470
PaeR7I CTCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 24
PkrI GCNGC 4 cut(s) 147, 150, 153, 342
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 61
PshAI GACNNNNGTC 1 cut(s) 509
PshBI ATTAAT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 144, 432, 470
PspPI GGNCC 2 cut(s) 7, 371
PspXI VCTCGAGB 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 2 cut(s) 59, 175
RsaNI GTAC 2 cut(s) 58, 174
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 4 cut(s) 146, 149, 152, 341
Sau3AI GATC 3 cut(s) 42, 199, 210
Sau96I GGNCC 2 cut(s) 7, 371
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 11
SfaNI GCATC 1 cut(s) 327
Sfr274I CTCGAG 1 cut(s) 118
SinI GGWCC 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 190, 277
SsiI CCGC 4 cut(s) 146, 149, 152, 341
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 242, 468
TaiI ACGT 3 cut(s) 63, 93, 179
TaqI TCGA 2 cut(s) 119, 230
TasI AATT 2 cut(s) 190, 277
TauI GCSGC 4 cut(s) 148, 151, 154, 343
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 507
TspDTI ATGAA 2 cut(s) 147, 270
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 371
VspI ATTAAT 1 cut(s) 263
XhoI CTCGAG 1 cut(s) 118
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.