AT1G78410

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014028
Physical Location & Seq
Forward (+)
29502506 .. 29503938
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78410.2

Sequence Viewer

Length: 327 bp
ATGTCTGGAAGAGGGAAAGTGAAATCGGAGCCGATGAAGGTTGTGTTCATTAACACACAGTATGTTGAGACAGATGCTCGTAGCTTCAAGACCGTTGTTCAAGAACTCACCGGTAAGAACGCCATCGTCGCCGCCGGTCCTTTTGATTCGCCCTCTGCTTTCGACGGCCGTTGTTACGATGGCGGTAGTAAAATCGGTGAAGATACCAGACAGCTCCACGGCGGTGGCGGCGGAGGAGGACGAATGGGGACGACGACGGAGTTCGATAGATTATTCAAAGAGATGCCTCACATGGAAGAATTGTATAAACTATGGTCAGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006979 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

108

Amino Acids

11.88

Weight (kDa)

6.1

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 17 - 41 8.6e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17147 AT1G78410 AT1G78410
fragaria_vesca FvH4_3g16620
prunus_persica Prupe.4G149000_v2.0.a1
pyrus_communis pycom05g19420 pycom10g16860
rosa_chinensis RchiOBHm_Chr5g0027761
rosa_laevigata RLG00000033041
rosa_multiflora Rmu_sc0000920.1_g000001
rosa_roxburghii Rroxscaffold_1G00051850
rosa_rugosa Rorug05G0101000
rosa_samantha Rh5AG195200 Rh5BG193400 Rh5CG213700 Rh5DG195400
rosa_wichuraiana Rw5G017810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 132, 183, 222, 228, 231
AcoI YGGCCR 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 110
AgsI TTSAA 3 cut(s) 88, 101, 277
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 2 cut(s) 84, 214
AluI AGCT 2 cut(s) 84, 214
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 166
AsiGI ACCGGT 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 100, 209
AvaII GGWCC 1 cut(s) 137
BccI CCATC 2 cut(s) 131, 173
BceAI ACGGC 3 cut(s) 153, 181, 235
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 2 cut(s) 132, 229
BlsI GCNGC 2 cut(s) 133, 230
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 2 cut(s) 64, 273
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 110
Bse118I RCCGGY 2 cut(s) 110, 134
BseDI CCNNGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 249
BseX3I CGGCCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 2 cut(s) 111, 135
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 168
BspACI CCGC 5 cut(s) 132, 183, 222, 228, 231
BspANI GGCC 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 30
BsrFI RCCGGY 2 cut(s) 110, 134
BssAI RCCGGY 2 cut(s) 110, 134
BssECI CCNNGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 60, 94
Bst6I CTCTTC 1 cut(s) 4
BstDSI CCRYGG 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 62
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 128, 228
BstXI CCANNNNNNTGG 1 cut(s) 224
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 217
Cfr10I RCCGGY 2 cut(s) 110, 134
Cfr13I GGNCC 1 cut(s) 137
CspAI ACCGGT 1 cut(s) 110
CviAII CATG 1 cut(s) 292
CviJI RGCY 4 cut(s) 31, 84, 168, 214
CviKI_1 RGCY 4 cut(s) 31, 84, 168, 214
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
EciI GGCGGA 1 cut(s) 246
EclXI CGGCCG 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 137
Eco52I CGGCCG 1 cut(s) 166
FaeI CATG 1 cut(s) 295
FaiI YATR 4 cut(s) 63, 293, 306, 313
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 132, 229
Fsp4HI GCNGC 2 cut(s) 132, 229
GluI GCNGC 2 cut(s) 132, 229
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 111, 135
Hin1II CATG 1 cut(s) 295
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 111, 135
HphI GGTGA 2 cut(s) 100, 209
Hpy188I TCNGA 2 cut(s) 28, 319
Hpy188III TCNNGA 3 cut(s) 6, 88, 101
Hpy99I CGWCG 4 cut(s) 131, 167, 256, 259
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 60, 94
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 228
Hsp92II CATG 1 cut(s) 295
LmnI GCTCC 2 cut(s) 28, 219
LpnPI CCDG 3 cut(s) 124, 148, 220
LweI GCATC 2 cut(s) 64, 273
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 3 cut(s) 21, 212, 308
MluCI AATT 1 cut(s) 299
MnlI CCTC 5 cut(s) 5, 163, 227, 230, 297
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 2 cut(s) 111, 135
MwoI GCNNNNNNNGC 2 cut(s) 128, 228
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 30
OliI CACNNNNGTG 1 cut(s) 222
PfeI GAWTC 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 2 cut(s) 133, 230
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 2 cut(s) 132, 229
Sau96I GGNCC 1 cut(s) 137
SetI ASST 3 cut(s) 42, 86, 216
SfaNI GCATC 2 cut(s) 64, 273
SgeI CNNG 9 cut(s) 18, 90, 100, 113, 123, 147, 219, 230, 304
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 299
SsiI CCGC 5 cut(s) 132, 183, 222, 228, 231
SspI AATATT 1 cut(s) 323
TaaI ACNGT 2 cut(s) 60, 94
TaqI TCGA 2 cut(s) 162, 264
TasI AATT 1 cut(s) 299
TauI GCSGC 2 cut(s) 134, 231
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 37, 50
TspGWI ACGGA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.