Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

6069424 .. 6072140

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCCTTTGGTTTCATTATCTTTTGCTTCATCTTCTTCAAAAGCCATGGCTTTGTGCTCTATCTGTCCTCGCATCCCTCTTCGATTCAGGCCAAAACCCATTTCCCCTTTTCTCTCAAAACCTCAAATTTGTCTCGCTTACAGGGTTTACTCTTCCCTGCAATCTACTACTCCCTCTACCAGAGATGAACTTGGAACTGTTAGCATTGGGTTTCTGGGTATGGGAATCATGGGTTCTCCAATGGCACAGAACCTCATCAAAGCTGGGTGTGATGTGACTGTATGGAATCGAACTAAGAGCAAATGTGATCCTCTCGTTGGATTAGGAGCAAAGTACAAGTCTTCTCCTGAAGAAGTGACTGCAACTTGTGATCTCACATTTGCAATGCTTGCTGATCCTGAAAGTGCAATTGATGTTGCATGTGGAAAGAATGGAGCCATATTTGGGATTAGTTCAGGAAAAGGGTATGTTGATGTCTCAACCGTTGATGTGGCCTCATCAATACTAATCAGCAAGCAAATAAAGGATACCGGAGCCTTGTTCTTGGAGGCACCAGTTTCAGGTTCCAAAAAGCCTGCCGAAGATGGGCAGTTAATATTTCTCACTGCAGGTGACAAGCCGCTATACGAAAAAGCTGCTCCTTTCTTAGACATCATGGGAAAGTCAAAATTCTATTTGGGTGAAGTTGGTAATGGAGCAGCAATGAAACTTGTCGTCAACATGATCATGGGAAGTATGATGGCATCATTCGCGGAGGGAATACTTCTAAGCCAGAAAGTTGGACTCGATCCAAATGTACTTGTCGAGGTTGTCTCACAGGGAGCTATCAATGCGCCAATGTACTCACTAAAGGGTCCTTCAATGATCAAGTCAGTGTACCCGACGGCTTTTCCATTAAAGCATCAGCAGAAGGATATGAGACTCGCACTTGGACTAGCGGAATCCGTATCGCAATCTACTCCGATTGCAGCCGCTGCGAACGAGCTTTACAAGGTTGCAAAATCTTATGGGTTGAGCGATGAAGATTTCTCTGCAGTAATTGAAGCACTAAAAGCTGCAAAATCCCGAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

358

Amino Acids

37.78

Weight (kDa)

8.68

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	9 - 168	3.3e-44	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	171 - 290	2.2e-26	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	550
AccII	CGCG	1 cut(s)	752
AciI	CCGC	4 cut(s)	620, 752, 938, 972
AclWI	GGATC	3 cut(s)	302, 389, 782
AcsI	RAATTY	2 cut(s)	126, 668
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	4 cut(s)	335, 798, 842, 878
AfiI	CCNNNNNNNGG	4 cut(s)	317, 444, 560, 585
AgsI	TTSAA	3 cut(s)	39, 861, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	6 cut(s)	263, 635, 824, 985, 1055, 1073
AluI	AGCT	6 cut(s)	263, 635, 824, 985, 1055, 1073
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	4 cut(s)	137, 481, 817, 913
AlwI	GGATC	3 cut(s)	302, 389, 782
AlwNI	CAGNNNCTG	1 cut(s)	974
Ama87I	CYCGRG	1 cut(s)	1065
AoxI	GGCC	2 cut(s)	89, 492
ApeKI	GCWGC	5 cut(s)	635, 698, 968, 974, 1055
ApoI	RAATTY	2 cut(s)	126, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	1 cut(s)	854
AsuHPI	GGTGA	2 cut(s)	623, 692
AvaI	CYCGRG	1 cut(s)	1065
AvaII	GGWCC	1 cut(s)	854
BanI	GGYRCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	5 cut(s)	622, 710, 961, 980, 1042
BccI	CCATC	2 cut(s)	578, 733
BceAI	ACGGC	1 cut(s)	900
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	2 cut(s)	723, 864
BcoDI	GTCTC	4 cut(s)	137, 481, 817, 913
BfaI	CTAG	1 cut(s)	935
BfmI	CTRYAG	2 cut(s)	606, 1032
BfuAI	ACCTGC	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	7 cut(s)	620, 636, 699, 969, 972, 975, 1056
BlsI	GCNGC	7 cut(s)	621, 637, 700, 970, 973, 976, 1057
Bme18I	GGWCC	1 cut(s)	854
BmeT110I	CYCGRG	1 cut(s)	1065
BmgT120I	GGNCC	1 cut(s)	854
BmiI	GGNNCC	5 cut(s)	436, 535, 552, 565, 855
BmsI	GCATC	3 cut(s)	81, 752, 910
BpiI	GAAGAC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 444, 560, 585
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	2 cut(s)	390, 708
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	4 cut(s)	317, 444, 560, 585
BseMI	GCAATG	2 cut(s)	390, 708
BseNI	ACTGG	1 cut(s)	554
BseXI	GCAGC	5 cut(s)	622, 710, 961, 980, 1042
BseYI	CCCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	752
BshFI	GGCC	2 cut(s)	91, 494
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	1065
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	4 cut(s)	317, 444, 560, 585
BsmAI	GTCTC	4 cut(s)	137, 481, 817, 913
BsnI	GGCC	2 cut(s)	91, 494
BsoBI	CYCGRG	1 cut(s)	1065
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	4 cut(s)	620, 752, 938, 972
BspANI	GGCC	2 cut(s)	91, 494
BspFNI	CGCG	1 cut(s)	752
BspLI	GGNNCC	5 cut(s)	436, 535, 552, 565, 855
BspMAI	CTGCAG	2 cut(s)	610, 1036
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	3 cut(s)	302, 389, 782
BspT107I	GGYRCC	1 cut(s)	550
BsrDI	GCAATG	2 cut(s)	390, 708
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	199, 280, 484
Bst6I	CTCTTC	2 cut(s)	84, 157
BstAPI	GCANNNNNTGC	2 cut(s)	389, 974
BstC8I	GCNNGC	3 cut(s)	390, 515, 576
BstDEI	CTNAG	4 cut(s)	294, 646, 767, 1074
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	752
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	6 cut(s)	310, 373, 397, 726, 790, 867
BstMAI	GTCTC	4 cut(s)	137, 481, 817, 913
BstMBI	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 749, 830, 974, 1052
BstNSI	RCATGY	1 cut(s)	423
BstSFI	CTRYAG	2 cut(s)	606, 1032
BstUI	CGCG	1 cut(s)	752
BstV1I	GCAGC	5 cut(s)	622, 710, 961, 980, 1042
BstV2I	GAAGAC	1 cut(s)	333
BstXI	CCANNNNNNTGG	1 cut(s)	779
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	91, 494
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	1032
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	603, 879
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	3 cut(s)	390, 515, 576
CaiI	CAGNNNCTG	1 cut(s)	974
CfoI	GCGC	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	854
Csp6I	GTAC	4 cut(s)	334, 797, 841, 877
CviAII	CATG	6 cut(s)	46, 229, 420, 655, 721, 727
CviQI	GTAC	4 cut(s)	334, 797, 841, 877
DdeI	CTNAG	4 cut(s)	294, 646, 767, 1074
DpnI	GATC	6 cut(s)	309, 372, 396, 725, 789, 866
DpnII	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
Eam1104I	CTCTTC	2 cut(s)	84, 157
EarI	CTCTTC	2 cut(s)	84, 157
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	854
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	6 cut(s)	49, 232, 423, 658, 724, 730
FatI	CATG	6 cut(s)	45, 228, 419, 654, 720, 726
FbaI	TGATCA	2 cut(s)	723, 864
Fnu4HI	GCNGC	7 cut(s)	620, 636, 699, 969, 972, 975, 1056
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	7 cut(s)	620, 636, 699, 969, 972, 975, 1056
FspBI	CTAG	1 cut(s)	935
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	7 cut(s)	620, 636, 699, 969, 972, 975, 1056
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	91, 494
HapII	CCGG	1 cut(s)	531
HhaI	GCGC	1 cut(s)	835
Hin1II	CATG	6 cut(s)	49, 232, 423, 658, 724, 730
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	6 cut(s)	84, 225, 286, 783, 921, 941
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	2 cut(s)	623, 692
Hpy166II	GTNNAC	3 cut(s)	148, 718, 877
Hpy188I	TCNGA	1 cut(s)	963
Hpy188III	TCNNGA	4 cut(s)	347, 398, 456, 1065
Hpy8I	GTNNAC	3 cut(s)	148, 718, 877
Hpy99I	CGWCG	1 cut(s)	886
HpyAV	CCTTC	2 cut(s)	867, 904
HpyCH4III	ACNGT	3 cut(s)	199, 280, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 749, 830, 974, 1052
HpyF3I	CTNAG	4 cut(s)	294, 646, 767, 1074
Hsp92II	CATG	6 cut(s)	49, 232, 423, 658, 724, 730
HspAI	GCGC	1 cut(s)	833
Ksp22I	TGATCA	2 cut(s)	723, 864
Kzo9I	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
LmnI	GCTCC	6 cut(s)	326, 434, 533, 643, 695, 821
Lsp1109I	GCAGC	5 cut(s)	622, 710, 961, 980, 1042
LweI	GCATC	3 cut(s)	81, 752, 910
MaeI	CTAG	1 cut(s)	935
MaeIII	GTNAC	3 cut(s)	274, 355, 611
MalI	GATC	6 cut(s)	309, 372, 396, 725, 789, 866
MboI	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
MboII	GAAGA	8 cut(s)	24, 27, 71, 144, 333, 362, 593, 1034
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	4 cut(s)	126, 408, 668, 1038
MlyI	GAGTC	2 cut(s)	777, 915
MmeI	TCCRAC	2 cut(s)	298, 760
MseI	TTAA	2 cut(s)	593, 896
MslI	CAYNNNNRTG	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	1 cut(s)	531
MunI	CAATTG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	752
MwoI	GCNNNNNNNGC	5 cut(s)	389, 749, 830, 974, 1052
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
NlaIII	CATG	6 cut(s)	49, 232, 423, 658, 724, 730
NlaIV	GGNNCC	5 cut(s)	436, 535, 552, 565, 855
NmuCI	GTSAC	3 cut(s)	274, 355, 611
NspI	RCATGY	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	599
PfeI	GAWTC	4 cut(s)	84, 225, 286, 941
PkrI	GCNGC	7 cut(s)	621, 637, 700, 970, 973, 976, 1057
PleI	GAGTC	2 cut(s)	777, 915
PpsI	GAGTC	2 cut(s)	777, 915
PpuMI	RGGWCCY	1 cut(s)	854
Psp5II	RGGWCCY	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	5 cut(s)	436, 535, 552, 565, 855
PspPI	GGNCC	1 cut(s)	854
PspPPI	RGGWCCY	1 cut(s)	854
PsrI	GAACNNNNNNTAC	2 cut(s)	971, 1003
PstI	CTGCAG	2 cut(s)	610, 1036
PstNI	CAGNNNCTG	1 cut(s)	974
RsaI	GTAC	4 cut(s)	335, 798, 842, 878
RsaNI	GTAC	4 cut(s)	334, 797, 841, 877
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	593, 896
SatI	GCNGC	7 cut(s)	620, 636, 699, 969, 972, 975, 1056
Sau3AI	GATC	6 cut(s)	307, 370, 394, 723, 787, 864
Sau96I	GGNCC	1 cut(s)	854
SchI	GAGTC	2 cut(s)	777, 915
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	3 cut(s)	81, 752, 910
SfcI	CTRYAG	2 cut(s)	606, 1032
SinI	GGWCC	1 cut(s)	854
SmiMI	CAYNNNNRTG	1 cut(s)	725
Sse9I	AATT	4 cut(s)	126, 408, 668, 1038
SsiI	CCGC	4 cut(s)	620, 752, 938, 972
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	1 cut(s)	935
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	199, 280, 484
TaqI	TCGA	4 cut(s)	82, 289, 786, 804
TasI	AATT	4 cut(s)	126, 408, 668, 1038
TatI	WGTACW	3 cut(s)	333, 796, 840
TauI	GCSGC	2 cut(s)	622, 974
TfiI	GAWTC	4 cut(s)	84, 225, 286, 941
Tru1I	TTAA	2 cut(s)	593, 896
Tru9I	TTAA	2 cut(s)	593, 896
TscAI	CASTG	2 cut(s)	610, 879
TseFI	GTSAC	3 cut(s)	274, 355, 611
TseI	GCWGC	5 cut(s)	635, 698, 968, 974, 1055
Tsp45I	GTSAC	3 cut(s)	274, 355, 611
TspDTI	ATGAA	4 cut(s)	18, 201, 719, 1035
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	2 cut(s)	610, 879
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	2 cut(s)	126, 668
XceI	RCATGY	1 cut(s)	423
XspI	CTAG	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.