Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

26684563 .. 26688175

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33660.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGCATGTCCTTCTTGGTCAAGCCTAGTAATTGTCACCACTTATCATCTTTAACTGCCATGGCAATGTCCTCAACCTTCTGCCCTCATATTCCTAACCACTTGAGAAGTATACCCATTTGCTCATCCCCTACAAAACCCATCTCTCTTTCTCTCAAGGCTTTCTCTTCTCAACCATCCAATGCTTCTTCCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATCATGGGTTCTCCGATGGCACAGAATCTCATAAAATCTGGGTGTGATGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCCTTCATCAGCTTAGGTGCAAAATATAAACCCTCCCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCCATGCTTGCTGACCCTGAAAGTGCTGTTGATGTTGCTCTTGGGAAGGATGGAGCTGCTAGTGGAATGAGTACAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGGTGAAACTTCTAAACTGATTAGTGGTCATATCAAAGCTGCTGGGGCATTATTTTTAGAGGCTCCAGTTTCGGGCTCAAAAAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGTGACAAATCTTTGTATGAAATAGCGGCACCGCTTTTGGACGTCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGAAACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCCTCATTTTCAGAAGGGTTGGTTCTCACTGAGAAAATAGGGTTGGACCCAAAAGTACTAGTTGAGGTGATCTCACAGGGTGCCATTAGCTCACCAATGTACTCACTCAAAGGCCCATCAATGATTAAATCTCTATACCCTACTGCGTTTCCCTTGAAGCACCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGCTTGCAGCAGCTGCAAATGAACTGTACAAGGTAGCAAAGTCACACGGCCTCAGCGACGAAGACTTTTCAGCAGTCATTGAAGCACTGAAACAGAAGTTGAAGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

360

Amino Acids

37.7

Weight (kDa)

8.4

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	71 - 230	5.5e-44	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
AatII	GACGTC	1 cut(s)	663
Acc36I	ACCTGC	1 cut(s)	608
AccB1I	GGYRCC	2 cut(s)	646, 830
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	3 cut(s)	644, 650, 971
AclWI	GGATC	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	830
AfaI	GTAC	4 cut(s)	463, 807, 851, 998
AfeI	AGCGCT	1 cut(s)	1076
AfiI	CCNNNNNNNGG	3 cut(s)	569, 691, 919
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	489, 907, 1052, 1072
AhlI	ACTAGT	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	776, 808
AluBI	AGCT	6 cut(s)	330, 368, 446, 536, 840, 983
AluI	AGCT	6 cut(s)	330, 368, 446, 536, 840, 983
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	2 cut(s)	953, 983
Aor51HI	AGCGCT	1 cut(s)	1076
AoxI	GGCC	3 cut(s)	750, 862, 1018
ApeKI	GCWGC	7 cut(s)	368, 446, 536, 707, 977, 980, 983
AspLEI	GCGC	1 cut(s)	1077
AspS9I	GGNCC	2 cut(s)	796, 863
AsuHPI	GGTGA	5 cut(s)	29, 512, 632, 829, 834
AvaII	GGWCC	1 cut(s)	796
BanI	GGYRCC	2 cut(s)	646, 830
BanII	GRGCYC	1 cut(s)	575
BbrPI	CACGTG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	1038
BbvCI	CCTCAGC	1 cut(s)	1022
BbvI	GCAGC	7 cut(s)	355, 433, 523, 694, 970, 989, 992
BccI	CCATC	8 cut(s)	149, 184, 244, 434, 491, 587, 742, 874
BceAI	ACGGC	1 cut(s)	1033
BclI	TGATCA	1 cut(s)	732
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	4 cut(s)	27, 450, 809, 1078
BfmI	CTRYAG	2 cut(s)	357, 615
BfoI	RGCGCY	1 cut(s)	1078
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	9 cut(s)	369, 447, 537, 645, 708, 971, 978, 981, 984
BlsI	GCNGC	9 cut(s)	370, 448, 538, 646, 709, 972, 979, 982, 985
BmcAI	AGTACT	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	2 cut(s)	796, 863
BmiI	GGNNCC	4 cut(s)	561, 648, 798, 832
BmsI	GCATC	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	1038
BplI	GAGNNNNNCTC	4 cut(s)	806, 838, 919, 951
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	2 cut(s)	331, 1022
BpuEI	CTTGAG	2 cut(s)	124, 140
BsaAI	YACGTR	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	660
BsaJI	CCNNGG	3 cut(s)	60, 223, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	569, 691, 919
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	60, 223, 685
BseGI	GGATG	4 cut(s)	125, 176, 445, 487
BseLI	CCNNNNNNNGG	3 cut(s)	569, 691, 919
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	771, 1036
BseNI	ACTGG	1 cut(s)	563
BseXI	GCAGC	7 cut(s)	355, 433, 523, 694, 970, 989, 992
BseYI	CCCAGC	1 cut(s)	539
BshFI	GGCC	3 cut(s)	752, 864, 1020
BshNI	GGYRCC	2 cut(s)	646, 830
BslI	CCNNNNNNNGG	3 cut(s)	569, 691, 919
BsnI	GGCC	3 cut(s)	752, 864, 1020
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp1407I	TGTACA	1 cut(s)	996
Bsp143I	GATC	3 cut(s)	316, 732, 819
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	3 cut(s)	644, 650, 971
BspANI	GGCC	3 cut(s)	752, 864, 1020
BspCNI	CTCAG	2 cut(s)	772, 1035
BspLI	GGNNCC	4 cut(s)	561, 648, 798, 832
BspMAI	CTGCAG	2 cut(s)	361, 619
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	646, 830
BsrDI	GCAATG	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	996
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	60, 223, 685
BssMI	GATC	3 cut(s)	316, 732, 819
BssNAI	GTATAC	1 cut(s)	113
BssNI	GRCGYC	1 cut(s)	660
BssT1I	CCWWGG	3 cut(s)	60, 223, 685
Bst1107I	GTATAC	1 cut(s)	113
Bst4CI	ACNGT	4 cut(s)	289, 493, 704, 996
Bst6I	CTCTTC	2 cut(s)	172, 299
BstACI	GRCGYC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstAUI	TGTACA	1 cut(s)	996
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	207, 399, 933, 975
BstDEI	CTNAG	3 cut(s)	331, 780, 1022
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	4 cut(s)	125, 176, 445, 487
BstH2I	RGCGCY	1 cut(s)	1078
BstHHI	GCGC	1 cut(s)	1077
BstKTI	GATC	3 cut(s)	319, 735, 822
BstMBI	GATC	3 cut(s)	316, 732, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 398, 542, 983
BstNSI	RCATGY	1 cut(s)	10
BstSFI	CTRYAG	2 cut(s)	357, 615
BstV1I	GCAGC	7 cut(s)	355, 433, 523, 694, 970, 989, 992
BstV2I	GAAGAC	1 cut(s)	1038
BstZ17I	GTATAC	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	752, 864, 1020
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	125, 176, 445, 487
BtsIMutI	CAGTG	2 cut(s)	777, 1055
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	4 cut(s)	207, 399, 933, 975
CaiI	CAGNNNCTG	2 cut(s)	953, 983
CfoI	GCGC	1 cut(s)	1077
Cfr13I	GGNCC	2 cut(s)	796, 863
Csp6I	GTAC	4 cut(s)	462, 806, 850, 997
CviAII	CATG	9 cut(s)	7, 61, 238, 394, 664, 712, 730, 736, 925
CviQI	GTAC	4 cut(s)	462, 806, 850, 997
DdeI	CTNAG	3 cut(s)	331, 780, 1022
DpnI	GATC	3 cut(s)	318, 734, 821
DpnII	GATC	3 cut(s)	316, 732, 819
DraIII	CACNNNGTG	1 cut(s)	830
Eam1104I	CTCTTC	2 cut(s)	172, 299
EarI	CTCTTC	2 cut(s)	172, 299
Eco130I	CCWWGG	3 cut(s)	60, 223, 685
Eco24I	GRGCYC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	796
Eco47III	AGCGCT	1 cut(s)	1076
Eco72I	CACGTG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoT14I	CCWWGG	3 cut(s)	60, 223, 685
EcoT38I	GRGCYC	1 cut(s)	575
ErhI	CCWWGG	3 cut(s)	60, 223, 685
FaeI	CATG	9 cut(s)	10, 64, 241, 397, 667, 715, 733, 739, 928
FatI	CATG	9 cut(s)	6, 60, 237, 393, 663, 711, 729, 735, 924
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	9 cut(s)	369, 447, 537, 645, 708, 971, 978, 981, 984
FokI	GGATG	4 cut(s)	112, 163, 452, 494
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	9 cut(s)	369, 447, 537, 645, 708, 971, 978, 981, 984
FspBI	CTAG	4 cut(s)	27, 450, 809, 1078
GlaI	GCGC	1 cut(s)	1076
GluI	GCNGC	9 cut(s)	369, 447, 537, 645, 708, 971, 978, 981, 984
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	1078
HaeIII	GGCC	3 cut(s)	752, 864, 1020
HhaI	GCGC	1 cut(s)	1077
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	9 cut(s)	10, 64, 241, 397, 667, 715, 733, 739, 928
Hin6I	GCGC	1 cut(s)	1075
HinP1I	GCGC	1 cut(s)	1075
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	3 cut(s)	234, 259, 950
HphI	GGTGA	5 cut(s)	29, 512, 632, 829, 834
Hpy166II	GTNNAC	2 cut(s)	113, 727
Hpy188I	TCNGA	2 cut(s)	249, 763
Hpy188III	TCNNGA	1 cut(s)	675
Hpy8I	GTNNAC	2 cut(s)	113, 727
Hpy99I	CGWCG	1 cut(s)	1031
HpyAV	CCTTC	5 cut(s)	22, 88, 331, 430, 758
HpyCH4III	ACNGT	4 cut(s)	289, 493, 704, 996
HpyCH4IV	ACGT	2 cut(s)	211, 660
HpyCH4V	TGCA	6 cut(s)	338, 359, 371, 617, 977, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 398, 542, 983
HpyF3I	CTNAG	3 cut(s)	331, 780, 1022
HpySE526I	ACGT	2 cut(s)	211, 660
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	9 cut(s)	10, 64, 241, 397, 667, 715, 733, 739, 928
HspAI	GCGC	1 cut(s)	1075
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	3 cut(s)	316, 732, 819
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	443, 565
Lsp1109I	GCAGC	7 cut(s)	355, 433, 523, 694, 970, 989, 992
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	4 cut(s)	27, 450, 809, 1078
MaeII	ACGT	2 cut(s)	211, 660
MaeIII	GTNAC	5 cut(s)	35, 283, 382, 620, 1011
MalI	GATC	3 cut(s)	318, 734, 821
MboI	GATC	3 cut(s)	316, 732, 819
MboII	GAAGA	5 cut(s)	159, 180, 316, 602, 1043
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	2 cut(s)	31, 200
MmeI	TCCRAC	2 cut(s)	676, 774
MnlI	CCTC	9 cut(s)	82, 96, 361, 550, 685, 763, 808, 921, 1031
MseI	TTAA	2 cut(s)	53, 876
MslI	CAYNNNNRTG	2 cut(s)	65, 734
MspA1I	CMGCKG	1 cut(s)	983
MwoI	GCNNNNNNNGC	4 cut(s)	365, 398, 542, 983
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	316, 732, 819
NlaIII	CATG	9 cut(s)	10, 64, 241, 397, 667, 715, 733, 739, 928
NlaIV	GGNNCC	4 cut(s)	561, 648, 798, 832
NmuCI	GTSAC	5 cut(s)	35, 283, 382, 620, 1011
NspI	RCATGY	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	1023
PfeI	GAWTC	3 cut(s)	234, 259, 950
PkrI	GCNGC	9 cut(s)	370, 448, 538, 646, 709, 972, 979, 982, 985
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	212
PspCI	CACGTG	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	561, 648, 798, 832
PspPI	GGNCC	2 cut(s)	796, 863
PstI	CTGCAG	2 cut(s)	361, 619
PstNI	CAGNNNCTG	2 cut(s)	953, 983
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	4 cut(s)	463, 807, 851, 998
RsaNI	GTAC	4 cut(s)	462, 806, 850, 997
RseI	CAYNNNNRTG	2 cut(s)	65, 734
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	53, 876
SatI	GCNGC	9 cut(s)	369, 447, 537, 645, 708, 971, 978, 981, 984
Sau3AI	GATC	3 cut(s)	316, 732, 819
Sau96I	GGNCC	2 cut(s)	796, 863
ScaI	AGTACT	1 cut(s)	807
SduI	GDGCHC	1 cut(s)	575
SfaNI	GCATC	1 cut(s)	380
SfcI	CTRYAG	2 cut(s)	357, 615
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	2 cut(s)	65, 734
SmlI	CTYRAG	2 cut(s)	103, 155
SmoI	CTYRAG	2 cut(s)	103, 155
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	2 cut(s)	31, 200
SsiI	CCGC	3 cut(s)	644, 650, 971
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	4 cut(s)	27, 450, 809, 1078
StyI	CCWWGG	3 cut(s)	60, 223, 685
TaaI	ACNGT	4 cut(s)	289, 493, 704, 996
TaiI	ACGT	2 cut(s)	214, 663
TasI	AATT	2 cut(s)	31, 200
TatI	WGTACW	4 cut(s)	461, 805, 849, 996
TauI	GCSGC	2 cut(s)	647, 973
TfiI	GAWTC	3 cut(s)	234, 259, 950
Tru1I	TTAA	2 cut(s)	53, 876
Tru9I	TTAA	2 cut(s)	53, 876
TscAI	CASTG	2 cut(s)	784, 1062
TseFI	GTSAC	5 cut(s)	35, 283, 382, 620, 1011
TseI	GCWGC	7 cut(s)	368, 446, 536, 707, 977, 980, 983
Tsp45I	GTSAC	5 cut(s)	35, 283, 382, 620, 1011
TspDTI	ATGAA	5 cut(s)	213, 313, 651, 728, 1005
TspRI	CASTG	2 cut(s)	784, 1062
VpaK11BI	GGWCC	1 cut(s)	796
XagI	CCTNNNNNAGG	1 cut(s)	689
XceI	RCATGY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	112
XspI	CTAG	4 cut(s)	27, 450, 809, 1078
ZraI	GACGTC	1 cut(s)	661
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.