Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Forward (+)

23556598 .. 23559912

Gene Structure 3315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGTTCTCCGATGGCACAGAACCTTATAAAATCTGGGTGTGATGTTACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTTGCCGACCCTGAAAGTGCTGTTGACGTTGCCCTTGGGAAGCATGGAGCTGCTAGTGGAATGAGTTCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGGTGAAACTTCTAAACTGATTGGTGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCAGGCTCAAAAAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGAAACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTTTCGGAAGGGTTGGTTCTCACTGAGAAAATAGGACTAGACCCAAAAGTATTAGTTGAGGTGGTCTCACAGGGTGCCATTAGCGCACCAATGTACTCACTCAAAGGCCCGTCAATGATTCAATCTCTCTACCCTACCGCATTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAACCTACGCCAATTGCAGCAGCTGCAAATGAACTTTACAAGGTTGCAAAGTCACATGGCCTTAGTGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

280

Amino Acids

29.25

Weight (kDa)

6.44

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	1 - 151	7.1e-38	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	154 - 273	2.6e-28	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	593
AciI	CCGC	2 cut(s)	413, 657
AclWI	GGATC	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	2 cut(s)	332, 454
AgsI	TTSAA	6 cut(s)	252, 641, 670, 815, 823, 835
AluBI	AGCT	5 cut(s)	93, 131, 209, 299, 746
AluI	AGCT	5 cut(s)	93, 131, 209, 299, 746
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	2 cut(s)	716, 746
AoxI	GGCC	2 cut(s)	625, 781
ApeKI	GCWGC	7 cut(s)	131, 209, 407, 470, 740, 743, 746
Asp700I	GAANNNNTTC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	275, 395
BanI	GGYRCC	1 cut(s)	593
BbvI	GCAGC	7 cut(s)	118, 196, 419, 457, 733, 752, 755
BccI	CCATC	4 cut(s)	7, 254, 350, 505
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	2 cut(s)	213, 557
BfmI	CTRYAG	2 cut(s)	120, 378
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	7 cut(s)	132, 210, 408, 471, 741, 744, 747
BlsI	GCNGC	7 cut(s)	133, 211, 409, 472, 742, 745, 748
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	324, 595
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	143, 524, 682
BmuI	ACTGGG	1 cut(s)	312
BplI	GAGNNNNNCTC	4 cut(s)	569, 601, 682, 714
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	193, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 454
Bse1I	ACTGG	2 cut(s)	307, 326
BseDI	CCNNGG	2 cut(s)	193, 448
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	332, 454
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	307, 326
BseXI	GCAGC	7 cut(s)	118, 196, 419, 457, 733, 752, 755
BshFI	GGCC	2 cut(s)	627, 783
BshNI	GGYRCC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	332, 454
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	627, 783
Bso31I	GGTCTC	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	79, 495
BspACI	CCGC	2 cut(s)	413, 657
BspANI	GGCC	2 cut(s)	627, 783
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	324, 595
BspMAI	CTGCAG	2 cut(s)	124, 382
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	307, 326
BssECI	CCNNGG	2 cut(s)	193, 448
BssMI	GATC	2 cut(s)	79, 495
BssT1I	CCWWGG	2 cut(s)	193, 448
Bst4CI	ACNGT	3 cut(s)	52, 256, 467
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	162, 696
BstDEI	CTNAG	3 cut(s)	94, 543, 785
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	2 cut(s)	82, 498
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	2 cut(s)	79, 495
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 161, 305, 602, 746
BstSFI	CTRYAG	2 cut(s)	120, 378
BstV1I	GCAGC	7 cut(s)	118, 196, 419, 457, 733, 752, 755
BsuRI	GGCC	2 cut(s)	627, 783
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	162, 696
CaiI	CAGNNNCTG	2 cut(s)	716, 746
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	7 cut(s)	203, 427, 475, 493, 499, 688, 779
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	3 cut(s)	94, 543, 785
DpnI	GATC	2 cut(s)	81, 497
DpnII	GATC	2 cut(s)	79, 495
DraIII	CACNNNGTG	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	193, 448
Eco31I	GGTCTC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	193, 448
ErhI	CCWWGG	2 cut(s)	193, 448
FaeI	CATG	7 cut(s)	206, 430, 478, 496, 502, 691, 782
FatI	CATG	7 cut(s)	202, 426, 474, 492, 498, 687, 778
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	7 cut(s)	132, 210, 408, 471, 741, 744, 747
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	7 cut(s)	132, 210, 408, 471, 741, 744, 747
FspBI	CTAG	2 cut(s)	213, 557
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	7 cut(s)	132, 210, 408, 471, 741, 744, 747
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	627, 783
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	7 cut(s)	206, 430, 478, 496, 502, 691, 782
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	2 cut(s)	184, 490
HindII	GTYRAC	2 cut(s)	184, 490
HinfI	GANTC	2 cut(s)	637, 713
HphI	GGTGA	2 cut(s)	275, 395
Hpy166II	GTNNAC	2 cut(s)	184, 490
Hpy188I	TCNGA	2 cut(s)	12, 526
Hpy188III	TCNNGA	2 cut(s)	228, 438
Hpy8I	GTNNAC	2 cut(s)	184, 490
HpyAV	CCTTC	1 cut(s)	521
HpyCH4III	ACNGT	3 cut(s)	52, 256, 467
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	101, 122, 134, 380, 740, 749, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 161, 305, 602, 746
HpyF3I	CTNAG	3 cut(s)	94, 543, 785
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	206, 430, 478, 496, 502, 691, 782
HspAI	GCGC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	79, 495
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	206, 328
Lsp1109I	GCAGC	7 cut(s)	118, 196, 419, 457, 733, 752, 755
LweI	GCATC	3 cut(s)	143, 524, 682
MaeI	CTAG	2 cut(s)	213, 557
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	5 cut(s)	46, 145, 383, 774, 788
MalI	GATC	2 cut(s)	81, 497
MboI	GATC	2 cut(s)	79, 495
MboII	GAAGA	2 cut(s)	79, 365
MfeI	CAATTG	1 cut(s)	735
MluCI	AATT	1 cut(s)	735
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	124, 313, 448, 571, 684, 787
MroXI	GAANNNNTTC	1 cut(s)	223
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	735
MwoI	GCNNNNNNNGC	5 cut(s)	128, 161, 305, 602, 746
NdeII	GATC	2 cut(s)	79, 495
NlaIII	CATG	7 cut(s)	206, 430, 478, 496, 502, 691, 782
NlaIV	GGNNCC	2 cut(s)	324, 595
NmuCI	GTSAC	4 cut(s)	145, 383, 774, 788
PaqCI	CACCTGC	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	637, 713
PkrI	GCNGC	7 cut(s)	133, 211, 409, 472, 742, 745, 748
PsiI	TTATAA	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	324, 595
PspPI	GGNCC	1 cut(s)	626
PstI	CTGCAG	2 cut(s)	124, 382
PstNI	CAGNNNCTG	2 cut(s)	716, 746
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	7 cut(s)	132, 210, 408, 471, 741, 744, 747
Sau3AI	GATC	2 cut(s)	79, 495
Sau96I	GGNCC	1 cut(s)	626
SfaNI	GCATC	3 cut(s)	143, 524, 682
SfcI	CTRYAG	2 cut(s)	120, 378
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	1 cut(s)	735
SsiI	CCGC	2 cut(s)	413, 657
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	213, 557
StyI	CCWWGG	2 cut(s)	193, 448
TaaI	ACNGT	3 cut(s)	52, 256, 467
TaiI	ACGT	1 cut(s)	189
TasI	AATT	1 cut(s)	735
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	2 cut(s)	637, 713
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	4 cut(s)	145, 383, 774, 788
TseI	GCWGC	7 cut(s)	131, 209, 407, 470, 740, 743, 746
Tsp45I	GTSAC	4 cut(s)	145, 383, 774, 788
TspDTI	ATGAA	3 cut(s)	414, 491, 768
TspRI	CASTG	1 cut(s)	547
XagI	CCTNNNNNAGG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	2 cut(s)	213, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.