Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457181.1

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Forward (+)

311 .. 1684

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtccttcttggtcaagcctagtaactgtcaccacttatctttaactgccatggcaatgtcctcaagcttctgccctcatattcctaaccacttgagaagtagacccatttgctcattccctacaaagcctgtctctctctctctcaaggccttctcttcccaaccatccaatgcttcattcacagatgaattgccagcacgtgtgggtttccttggtcttggaattatgggttctccaatggcacagaaccttataaaatctgggtgtgacgtgactgtttggaataggacgaagagcaaatgtgatccactcatcagcttaggtgcaaaatataaaccctctcctgcagaagtagctgcatcttgtgatgtcacatttgctatgcttgccgaccctgaaagtgctgttgatgttgcccttggggagcatggagctgttagtggaatgagtacaggaaaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

155

Amino Acids

16.24

Weight (kDa)

8.58

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	302
AcvI	CACGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	69, 321, 359, 437
AluI	AGCT	4 cut(s)	69, 321, 359, 437
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	274
BmsI	GCATC	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	3 cut(s)	49, 115, 131
BsaAI	YACGTR	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	51, 214, 421
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	51, 214, 421
BseGI	GGATG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	152
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	51, 214, 421
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	3 cut(s)	51, 214, 421
Bst4CI	ACNGT	2 cut(s)	29, 280
Bst6I	CTCTTC	2 cut(s)	163, 290
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	198, 390
BstDEI	CTNAG	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 389
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	198, 390
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	52, 431
CviJI	RGCY	7 cut(s)	19, 69, 130, 152, 321, 359, 437
CviKI_1	RGCY	7 cut(s)	19, 69, 130, 152, 321, 359, 437
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	322
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	163, 290
EarI	CTCTTC	2 cut(s)	163, 290
Eco130I	CCWWGG	3 cut(s)	51, 214, 421
Eco147I	AGGCCT	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	203
EcoT14I	CCWWGG	3 cut(s)	51, 214, 421
ErhI	CCWWGG	3 cut(s)	51, 214, 421
FaeI	CATG	2 cut(s)	55, 434
FaiI	YATR	7 cut(s)	53, 81, 230, 257, 336, 386, 432
FatI	CATG	2 cut(s)	51, 430
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	55, 434
HindIII	AAGCTT	1 cut(s)	67
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	16, 163
HpyCH4III	ACNGT	2 cut(s)	29, 280
HpyCH4IV	ACGT	2 cut(s)	202, 273
HpyCH4V	TGCA	3 cut(s)	329, 350, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 389
HpyF3I	CTNAG	1 cut(s)	322
HpySE526I	ACGT	2 cut(s)	202, 273
Hsp92II	CATG	2 cut(s)	55, 434
Kzo9I	GATC	1 cut(s)	307
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	427, 434
LpnPI	CCDG	6 cut(s)	144, 210, 249, 360, 411, 441
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	202, 273
MaeIII	GTNAC	5 cut(s)	23, 29, 269, 274, 373
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	150, 307
MluCI	AATT	2 cut(s)	191, 225
MnlI	CCTC	3 cut(s)	73, 87, 352
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	356, 389
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	55, 434
NmuCI	GTSAC	4 cut(s)	29, 269, 274, 373
PceI	AGGCCT	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	361
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	257
PspCI	CACGTG	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	307
SetI	ASST	8 cut(s)	71, 205, 255, 276, 323, 328, 361, 439
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	64, 94, 146
SmoI	CTYRAG	3 cut(s)	64, 94, 146
Sse9I	AATT	2 cut(s)	191, 225
SseBI	AGGCCT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	152
StyI	CCWWGG	3 cut(s)	51, 214, 421
TaaI	ACNGT	2 cut(s)	29, 280
TaiI	ACGT	2 cut(s)	205, 276
TasI	AATT	2 cut(s)	191, 225
TatI	WGTACW	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	4 cut(s)	29, 269, 274, 373
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	4 cut(s)	29, 269, 274, 373
TspDTI	ATGAA	2 cut(s)	168, 204
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.